Wall clock time and date at job start Mon Mar 30 2020 06:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00177 * 2 1 4 4 H 1.48503 * 109.47256 * 239.99757 * 3 2 1 5 5 H 1.48505 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47390 * 119.99910 * 3 2 1 7 7 C 1.38652 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99636 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00162 * 185.05709 * 9 7 2 11 11 C 1.38953 * 120.03618 * 174.48597 * 10 9 7 12 12 C 1.38128 * 120.08058 * 179.97438 * 11 10 9 13 13 C 1.38186 * 120.14291 * 359.74373 * 12 11 10 14 14 C 1.38969 * 120.06178 * 0.50824 * 13 12 11 15 15 N 1.39673 * 120.03928 * 179.76783 * 14 13 12 16 16 C 1.46498 * 120.00094 * 359.72865 * 15 14 13 17 17 C 1.53004 * 109.47136 * 180.02562 * 16 15 14 18 18 H 1.08996 * 111.02334 * 57.76359 * 17 16 15 19 19 C 1.55451 * 111.14744 * 181.91582 * 17 16 15 20 20 C 1.54381 * 102.18675 * 151.99001 * 19 17 16 21 21 O 1.43240 * 107.66222 * 338.74071 * 20 19 17 22 22 C 1.43643 * 109.97228 * 358.24437 * 21 20 19 23 23 C 1.38731 * 120.02987 * 354.46299 * 10 9 7 24 24 H 0.97004 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.95738 * 359.97438 * 11 10 9 26 26 H 1.07995 * 119.92638 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.97286 * 180.27599 * 13 12 11 28 28 H 0.96999 * 119.99594 * 179.72033 * 15 14 13 29 29 H 1.08996 * 109.47650 * 59.99735 * 16 15 14 30 30 H 1.09006 * 109.46999 * 299.99533 * 16 15 14 31 31 H 1.09001 * 110.83028 * 33.84191 * 19 17 16 32 32 H 1.08998 * 110.92068 * 270.18171 * 19 17 16 33 33 H 1.08996 * 109.83144 * 219.18414 * 20 19 17 34 34 H 1.09000 * 109.83002 * 98.29800 * 20 19 17 35 35 H 1.08995 * 110.30964 * 143.34634 * 22 21 20 36 36 H 1.09007 * 110.30812 * 265.40929 * 22 21 20 37 37 H 1.07998 * 120.06399 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 0.1055 11 6 1.4353 -4.7348 0.2274 12 6 2.1825 -5.8916 0.3348 13 6 3.5628 -5.8303 0.3163 14 6 4.2037 -4.6027 0.2000 15 7 5.5989 -4.5408 0.1862 16 6 6.3878 -5.7699 0.3003 17 6 7.8780 -5.4252 0.2593 18 1 8.1402 -4.7285 1.0554 19 6 8.7526 -6.7084 0.3295 20 6 10.0281 -6.2751 -0.4245 21 8 9.6843 -5.1598 -1.2550 22 6 8.2839 -4.8666 -1.1277 23 6 3.4555 -3.4388 0.0920 24 1 -0.4850 0.8401 -0.0004 25 1 0.3566 -4.7865 0.2380 26 1 1.6867 -6.8463 0.4298 27 1 4.1443 -6.7369 0.3960 28 1 6.0455 -3.6840 0.1009 29 1 6.1456 -6.4355 -0.5282 30 1 6.1556 -6.2645 1.2435 31 1 8.2640 -7.5389 -0.1801 32 1 8.9820 -6.9670 1.3632 33 1 10.3905 -7.0974 -1.0413 34 1 10.7978 -5.9812 0.2892 35 1 8.1178 -3.7900 -1.1654 36 1 7.7201 -5.3636 -1.9173 37 1 3.9508 -2.4839 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:16 Heat of formation + Delta-G solvation = -71.571958 kcal Electronic energy + Delta-G solvation = -19079.495784 eV Core-core repulsion = 16014.311469 eV Total energy + Delta-G solvation = -3065.184316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86194 -40.38868 -38.65710 -36.35582 -34.25973 -33.48507 -31.08821 -30.40595 -29.26323 -27.23445 -26.33140 -23.44434 -23.31707 -22.19322 -21.57777 -19.72875 -18.99884 -17.80295 -17.42198 -16.74726 -16.49003 -16.15353 -15.98534 -15.81143 -15.49220 -15.26849 -14.91215 -14.46435 -14.39663 -14.09115 -13.67064 -13.49017 -12.97914 -12.64323 -12.59454 -12.46883 -12.25934 -12.20208 -12.11758 -11.84112 -11.72397 -11.28492 -10.93183 -10.60404 -10.51817 -9.09458 -8.44887 -8.23671 -6.13370 0.77275 0.92827 1.34404 1.46041 1.50823 2.18976 2.48602 2.90010 2.91202 3.27619 3.48478 3.60637 3.74088 3.87931 4.21391 4.24923 4.25088 4.32995 4.42203 4.58860 4.62419 4.71593 4.75694 4.78503 4.89114 4.91372 4.98434 5.09587 5.14658 5.16826 5.24961 5.46743 5.76113 5.81516 6.00649 6.04076 6.12124 6.59650 6.84027 7.00371 7.83949 8.78636 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.004358 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.586819 B = 6422.776345 C = 7628.267706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.099 0.901 9 O -0.233 6.233 10 C 0.152 3.848 11 C -0.262 4.262 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.255 3.745 15 N -0.747 5.747 16 C 0.142 3.858 17 C -0.127 4.127 18 H 0.094 0.906 19 C -0.138 4.138 20 C 0.042 3.958 21 O -0.412 6.412 22 C 0.052 3.948 23 C -0.318 4.318 24 H 0.272 0.728 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.144 0.856 28 H 0.398 0.602 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.593 -13.567 1.490 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.100 3.900 11 C -0.283 4.283 12 C -0.045 4.045 13 C -0.286 4.286 14 C 0.151 3.849 15 N -0.377 5.377 16 C 0.019 3.981 17 C -0.146 4.146 18 H 0.112 0.888 19 C -0.176 4.176 20 C -0.034 4.034 21 O -0.332 6.332 22 C -0.024 4.024 23 C -0.341 4.341 24 H 0.081 0.919 25 H 0.124 0.876 26 H 0.170 0.830 27 H 0.162 0.838 28 H 0.233 0.767 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.428 -13.491 1.357 22.878 hybrid contribution -0.131 1.328 -0.022 1.335 sum 18.297 -12.162 1.335 22.011 Atomic orbital electron populations 1.70185 1.08019 1.28778 1.49110 1.26575 0.96834 1.02689 0.95955 0.84668 0.77414 0.74394 0.79842 1.18222 1.19550 1.18236 1.21757 0.92419 0.81552 1.53108 0.88346 1.83947 1.35952 1.12666 1.81365 1.19652 0.90894 0.87706 0.91712 1.20278 0.99619 0.90806 1.17602 1.20837 0.93431 0.96811 0.93408 1.20568 0.94488 0.95911 1.17635 1.17532 0.83937 0.92781 0.90623 1.44664 1.01526 1.09481 1.82029 1.21282 0.88201 0.86593 1.02050 1.23034 0.94451 0.99086 0.98041 0.88791 1.23136 0.94403 0.96900 1.03184 1.23321 0.97715 0.88736 0.93596 1.88385 1.25565 1.51563 1.67702 1.23481 0.81443 1.01005 0.96464 1.20528 0.93111 0.98299 1.22205 0.91885 0.87643 0.82982 0.83799 0.76711 0.91488 0.90936 0.89061 0.87772 0.90410 0.90430 0.90134 0.92033 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.78 13.67 21.61 0.30 -57.49 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 43.66 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.49 9.76 -22.80 -0.22 -14.71 16 10 C 0.15 7.84 6.65 22.56 0.15 7.99 16 11 C -0.26 -11.63 9.99 22.42 0.22 -11.40 16 12 C -0.03 -0.90 10.03 22.23 0.22 -0.67 16 13 C -0.26 -8.26 9.31 22.43 0.21 -8.05 16 14 C 0.26 8.92 6.65 38.20 0.25 9.17 16 15 N -0.75 -19.33 5.59 -339.47 -1.90 -21.22 16 16 C 0.14 2.54 4.37 86.38 0.38 2.92 16 17 C -0.13 -1.89 3.16 -9.29 -0.03 -1.92 16 18 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 19 C -0.14 -1.47 6.52 31.91 0.21 -1.26 16 20 C 0.04 0.58 7.79 72.45 0.56 1.14 16 21 O -0.41 -8.72 11.36 -148.98 -1.69 -10.41 16 22 C 0.05 0.98 6.97 72.65 0.51 1.49 16 23 C -0.32 -14.24 9.01 22.52 0.20 -14.04 16 24 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 26 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 27 H 0.14 3.40 6.72 -2.91 -0.02 3.38 16 28 H 0.40 9.90 8.35 -92.71 -0.77 9.13 16 29 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16 30 H 0.07 1.20 7.96 -2.38 -0.02 1.18 16 31 H 0.09 0.82 8.03 -2.39 -0.02 0.80 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.18 8.00 -2.38 -0.02 1.16 16 37 H 0.11 5.17 5.63 -2.91 -0.02 5.16 16 Total: -1.00 -74.16 309.60 2.82 -71.34 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.30 Total: 26.33 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.00 Total: -39.53 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.60 Total: -78.71 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -1.91 Total: -25.12 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.16 2.82 -71.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.230 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds