Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39924 * 119.99940 * 180.02562 * 12 11 10 14 14 C 1.38863 * 120.02338 * 359.72636 * 13 12 11 15 15 C 1.38157 * 120.03339 * 179.77551 * 14 13 12 16 16 C 1.38691 * 120.16544 * 0.56353 * 15 14 13 17 17 C 1.38982 * 119.93958 * 359.62993 * 16 15 14 18 18 C 1.38668 * 119.88758 * 0.11685 * 17 16 15 19 19 O 1.36112 * 120.78810 * 180.26622 * 17 16 15 20 20 C 1.43169 * 116.72994 * 342.79143 * 19 17 16 21 21 C 1.53478 * 108.24720 * 46.20207 * 20 19 17 22 22 O 1.36233 * 119.31318 * 179.53719 * 16 15 14 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 31 31 H 1.08001 * 119.98276 * 0.04918 * 14 13 12 32 32 H 1.07998 * 119.91744 * 180.28233 * 15 14 13 33 33 H 1.07999 * 119.99052 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.70992 * 165.88989 * 20 19 17 35 35 H 1.08997 * 109.70821 * 286.51256 * 20 19 17 36 36 H 1.08992 * 109.71260 * 59.91305 * 21 20 19 37 37 H 1.08995 * 109.70857 * 180.55354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9656 -7.4198 -0.0019 14 6 0.6005 -7.6741 0.0043 15 6 0.1397 -8.9765 -0.0005 16 6 1.0376 -10.0335 0.0003 17 6 2.4046 -9.7824 -0.0019 18 6 2.8669 -8.4750 -0.0024 19 8 3.3011 -10.8065 -0.0066 20 6 2.8069 -12.0966 0.3691 21 6 1.4855 -12.3398 -0.3725 22 8 0.5642 -11.3109 0.0051 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.3858 -5.9235 -0.0021 31 1 -0.1014 -6.8532 0.0084 32 1 -0.9225 -9.1721 -0.0003 33 1 3.9288 -8.2780 -0.0036 34 1 3.5307 -12.8627 0.0913 35 1 2.6353 -12.1254 1.4451 36 1 1.6557 -12.3040 -1.4485 37 1 1.0824 -13.3139 -0.0956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -60.072751 kcal Electronic energy + Delta-G solvation = -18723.814726 eV Core-core repulsion = 15659.129053 eV Total energy + Delta-G solvation = -3064.685673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17239 -38.45357 -37.21806 -35.58623 -33.45988 -31.59524 -30.92315 -29.83667 -27.78120 -26.23146 -24.53799 -23.07774 -22.60137 -20.48816 -20.30820 -18.67054 -17.47827 -17.21456 -16.35184 -15.93894 -15.42296 -14.95234 -14.82142 -14.78128 -14.44206 -14.41590 -13.80596 -13.38870 -13.27870 -12.70264 -12.33841 -12.28738 -11.80392 -11.65591 -11.26860 -11.19449 -10.86174 -10.70754 -10.61348 -10.48756 -9.88284 -9.48637 -9.31920 -9.15802 -8.42265 -8.38558 -7.03772 -6.03733 -4.06580 1.38678 1.60427 2.93242 3.17566 3.31399 3.36039 3.38210 3.79125 3.87289 4.10914 4.43439 4.60726 4.68785 4.70524 5.01922 5.23388 5.24053 5.32240 5.34769 5.46856 5.60154 5.73289 5.89490 5.99266 6.11320 6.22781 6.41071 6.49093 6.58205 6.68870 6.89550 6.96958 7.39560 7.55794 7.60673 7.73615 7.94374 7.95526 8.36847 8.99757 9.57746 11.07593 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.062776 B = 0.002842 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.926429 B = 9848.553719 C =10244.405273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.121 3.879 12 N -0.740 5.740 13 C 0.233 3.767 14 C -0.193 4.193 15 C -0.061 4.061 16 C -0.023 4.023 17 C 0.098 3.902 18 C -0.202 4.202 19 O -0.310 6.310 20 C 0.022 3.978 21 C 0.023 3.977 22 O -0.312 6.312 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -23.927 0.016 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.003 4.003 12 N -0.368 5.368 13 C 0.127 3.873 14 C -0.216 4.216 15 C -0.080 4.080 16 C -0.069 4.069 17 C 0.053 3.947 18 C -0.226 4.226 19 O -0.225 6.225 20 C -0.054 4.054 21 C -0.054 4.054 22 O -0.228 6.228 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.233 0.767 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.143 -23.690 0.017 23.898 hybrid contribution 0.877 0.783 -0.013 1.176 sum 4.020 -22.907 0.004 23.257 Atomic orbital electron populations 1.69951 1.06055 1.26820 1.50560 1.25022 0.94867 0.99297 0.95234 0.86638 0.79573 0.83052 0.78625 1.20229 1.21250 1.20234 1.21176 0.92990 0.90989 1.50993 0.92723 1.19021 0.93831 0.90906 0.97524 1.21851 0.99787 0.93271 1.00939 1.21638 0.92170 0.85682 1.00788 1.45034 1.09084 1.01868 1.80801 1.17509 0.92210 0.84761 0.92805 1.20518 0.93851 0.96386 1.10831 1.20152 0.98886 0.89735 0.99229 1.18559 0.91007 0.84734 1.12556 1.18477 0.87053 0.88054 1.01155 1.19654 0.99670 0.88396 1.14886 1.86270 1.35584 1.16208 1.84425 1.23585 0.97308 0.84423 1.00073 1.23498 0.90320 0.91779 0.99759 1.86293 1.38051 1.12920 1.85487 0.92864 0.96330 0.96322 0.92760 0.92751 0.92407 0.92406 0.76692 0.84831 0.85057 0.85252 0.86507 0.90675 0.90988 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 1.98 4.91 -4.04 -0.02 1.96 16 12 N -0.74 -10.71 5.74 -58.61 -0.34 -11.05 16 13 C 0.23 3.36 6.65 -83.73 -0.56 2.80 16 14 C -0.19 -2.70 9.31 -39.38 -0.37 -3.06 16 15 C -0.06 -0.81 9.95 -39.44 -0.39 -1.20 16 16 C -0.02 -0.31 6.49 -39.14 -0.25 -0.57 16 17 C 0.10 1.36 6.49 -39.15 -0.25 1.10 16 18 C -0.20 -2.80 9.81 -39.22 -0.38 -3.19 16 19 O -0.31 -3.84 10.42 -32.87 -0.34 -4.18 16 20 C 0.02 0.18 7.26 37.41 0.27 0.45 16 21 C 0.02 0.18 7.26 37.41 0.27 0.46 16 22 O -0.31 -3.84 10.42 -33.26 -0.35 -4.19 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 29 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 30 H 0.40 5.23 8.49 -40.82 -0.35 4.89 16 31 H 0.13 1.79 6.73 -52.49 -0.35 1.44 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -31.43 312.09 -8.28 -39.70 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.29 Total: 1.06 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.38 Total: -16.61 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.40 Total: -36.93 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.69 Total: -8.37 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.43 -8.28 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds