Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.39924 * 119.99940 * 180.02562 * 12 11 10 14 14 C 1.38863 * 120.02338 * 359.72636 * 13 12 11 15 15 C 1.38157 * 120.03339 * 179.77551 * 14 13 12 16 16 C 1.38691 * 120.16544 * 0.56353 * 15 14 13 17 17 C 1.38982 * 119.93958 * 359.62993 * 16 15 14 18 18 C 1.38668 * 119.88758 * 0.11685 * 17 16 15 19 19 O 1.36112 * 120.78810 * 180.26622 * 17 16 15 20 20 C 1.43169 * 116.72994 * 342.79143 * 19 17 16 21 21 C 1.53478 * 108.24720 * 46.20207 * 20 19 17 22 22 O 1.36233 * 119.31318 * 179.53719 * 16 15 14 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 31 31 H 1.08001 * 119.98276 * 0.04918 * 14 13 12 32 32 H 1.07998 * 119.91744 * 180.28233 * 15 14 13 33 33 H 1.07999 * 119.99052 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.70992 * 165.88989 * 20 19 17 35 35 H 1.08997 * 109.70821 * 286.51256 * 20 19 17 36 36 H 1.08992 * 109.71260 * 59.91305 * 21 20 19 37 37 H 1.08995 * 109.70857 * 180.55354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9656 -7.4198 -0.0019 14 6 0.6005 -7.6741 0.0043 15 6 0.1397 -8.9765 -0.0005 16 6 1.0376 -10.0335 0.0003 17 6 2.4046 -9.7824 -0.0019 18 6 2.8669 -8.4750 -0.0024 19 8 3.3011 -10.8065 -0.0066 20 6 2.8069 -12.0966 0.3691 21 6 1.4855 -12.3398 -0.3725 22 8 0.5642 -11.3109 0.0051 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 3.3858 -5.9235 -0.0021 31 1 -0.1014 -6.8532 0.0084 32 1 -0.9225 -9.1721 -0.0003 33 1 3.9288 -8.2780 -0.0036 34 1 3.5307 -12.8627 0.0913 35 1 2.6353 -12.1254 1.4451 36 1 1.6557 -12.3040 -1.4485 37 1 1.0824 -13.3139 -0.0956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = -79.629060 kcal Electronic energy + Delta-G solvation = -18724.662751 eV Core-core repulsion = 15659.129053 eV Total energy + Delta-G solvation = -3065.533698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.07371 -39.50948 -38.10655 -36.94702 -35.24988 -33.24578 -31.82088 -30.94904 -29.03027 -27.70099 -25.69103 -24.35391 -23.88267 -22.02987 -21.36145 -19.61221 -18.57026 -18.40113 -18.01116 -17.01565 -16.51994 -16.39464 -16.19158 -15.86345 -15.76359 -15.28668 -14.77835 -14.51915 -14.31487 -14.18761 -13.93477 -13.70222 -13.33014 -12.85351 -12.75442 -12.47985 -12.36670 -12.26106 -11.91650 -11.59879 -11.45254 -11.37189 -11.18704 -10.54277 -10.41252 -9.43738 -8.19755 -8.12490 -6.30539 0.34940 0.55634 1.41261 1.43771 1.51712 2.05696 2.32887 2.41812 2.71354 2.82476 3.13958 3.41470 3.77897 4.01085 4.13516 4.15073 4.22049 4.26967 4.27601 4.50509 4.54693 4.62721 4.64231 4.86104 4.90889 4.99731 5.12649 5.18191 5.22748 5.36244 5.49668 5.53776 5.73573 5.85121 5.99846 6.21463 6.33520 6.54443 6.84664 6.87820 7.38717 8.91924 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.062776 B = 0.002842 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.926429 B = 9848.553719 C =10244.405273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.026 3.974 10 C -0.104 4.104 11 C 0.136 3.864 12 N -0.738 5.738 13 C 0.220 3.780 14 C -0.203 4.203 15 C -0.067 4.067 16 C -0.027 4.027 17 C 0.090 3.910 18 C -0.207 4.207 19 O -0.324 6.324 20 C 0.015 3.985 21 C 0.015 3.985 22 O -0.327 6.327 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.406 0.594 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -25.208 0.021 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.012 3.988 12 N -0.368 5.368 13 C 0.116 3.884 14 C -0.226 4.226 15 C -0.086 4.086 16 C -0.073 4.073 17 C 0.045 3.955 18 C -0.231 4.231 19 O -0.239 6.239 20 C -0.060 4.060 21 C -0.060 4.060 22 O -0.242 6.242 23 H 0.072 0.928 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.241 0.759 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.392 -25.013 0.022 25.396 hybrid contribution 0.480 1.003 -0.014 1.112 sum 4.872 -24.010 0.007 24.499 Atomic orbital electron populations 1.70085 1.07754 1.27856 1.51582 1.25967 0.95766 1.03332 0.94773 0.85519 0.78280 0.78207 0.79162 1.19200 1.20933 1.19209 1.21666 0.93602 0.92358 1.50643 0.92093 1.18919 0.94337 0.92570 0.95300 1.21568 0.98567 0.92709 1.01379 1.21279 0.91939 0.84974 1.00626 1.44777 1.09013 1.01455 1.81526 1.17593 0.92565 0.84626 0.93649 1.20630 0.93877 0.96882 1.11204 1.20360 0.99800 0.89518 0.98921 1.18722 0.91071 0.85605 1.11912 1.18600 0.87432 0.88573 1.00944 1.19790 1.00106 0.88498 1.14697 1.86245 1.35899 1.17355 1.84413 1.23962 0.98336 0.83305 1.00378 1.23867 0.90020 0.92036 1.00032 1.86266 1.39566 1.12875 1.85532 0.92750 0.98568 0.98556 0.92249 0.92246 0.92671 0.92677 0.75881 0.84819 0.83569 0.84321 0.82934 0.90356 0.90737 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.10 -4.04 5.27 30.59 0.16 -3.88 16 11 C 0.14 4.46 4.91 86.38 0.42 4.88 16 12 N -0.74 -20.95 5.74 -339.35 -1.95 -22.90 16 13 C 0.22 6.26 6.65 38.13 0.25 6.51 16 14 C -0.20 -5.64 9.31 22.40 0.21 -5.44 16 15 C -0.07 -1.74 9.95 22.36 0.22 -1.52 16 16 C -0.03 -0.72 6.49 22.56 0.15 -0.57 16 17 C 0.09 2.41 6.49 22.55 0.15 2.56 16 18 C -0.21 -5.60 9.81 22.50 0.22 -5.38 16 19 O -0.32 -7.49 10.42 -82.61 -0.86 -8.35 16 20 C 0.01 0.20 7.26 72.14 0.52 0.73 16 21 C 0.02 0.21 7.26 72.14 0.52 0.74 16 22 O -0.33 -7.52 10.42 -83.99 -0.88 -8.39 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 1.84 7.94 -2.39 -0.02 1.82 16 29 H 0.05 1.83 7.96 -2.39 -0.02 1.81 16 30 H 0.41 10.27 8.49 -92.71 -0.79 9.48 16 31 H 0.13 3.61 6.73 -2.91 -0.02 3.59 16 32 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.48 312.09 2.58 -64.90 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.28 Total: 14.65 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 3.68 Total: -29.71 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.66 Total: -78.99 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -1.74 Total: -16.75 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.48 2.58 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.732 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds