Wall clock time and date at job start Mon Mar 30 2020 07:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34178 * 125.44218 * 2 1 4 4 C 1.47013 * 105.95787 * 180.14513 * 3 2 1 5 5 C 1.47379 * 127.19538 * 179.83441 * 4 3 2 6 6 O 1.21611 * 120.00277 * 187.54057 * 5 4 3 7 7 N 1.34775 * 119.99827 * 7.54156 * 5 4 3 8 8 C 1.46502 * 120.00114 * 2.83557 * 7 5 4 9 9 C 1.50696 * 109.46857 * 278.33638 * 8 7 5 10 10 H 1.07994 * 120.00397 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99729 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99756 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47178 * 90.00210 * 13 11 9 15 15 H 1.48494 * 109.47271 * 209.99820 * 13 11 9 16 16 H 1.48504 * 109.47345 * 330.00428 * 13 11 9 17 17 C 1.46498 * 119.99968 * 183.10875 * 7 5 4 18 18 C 1.53005 * 117.49874 * 16.77242 * 17 7 5 19 19 C 1.53001 * 117.49906 * 308.14894 * 17 7 5 20 20 C 1.36420 * 105.61753 * 359.57347 * 4 3 2 21 21 C 1.50694 * 125.80591 * 180.26342 * 20 4 3 22 22 O 1.33652 * 108.38946 * 0.25872 * 20 4 3 23 23 H 1.08993 * 109.46965 * 180.31260 * 1 2 3 24 24 H 1.09002 * 109.46836 * 300.31145 * 1 2 3 25 25 H 1.08995 * 109.46604 * 60.30939 * 1 2 3 26 26 H 1.08002 * 127.01944 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.47026 * 38.33792 * 8 7 5 28 28 H 1.08999 * 109.47314 * 158.33105 * 8 7 5 29 29 H 0.97002 * 119.99912 * 179.97438 * 12 11 9 30 30 H 1.09005 * 115.55267 * 162.47866 * 17 7 5 31 31 H 1.08996 * 117.49970 * 359.97438 * 18 17 7 32 32 H 1.09003 * 117.49699 * 145.02260 * 18 17 7 33 33 H 1.09000 * 117.50131 * 214.97642 * 19 17 7 34 34 H 1.08990 * 117.50023 * 359.97438 * 19 17 7 35 35 H 1.08994 * 109.47628 * 89.99875 * 21 20 4 36 36 H 1.09004 * 109.47169 * 210.00091 * 21 20 4 37 37 H 1.09000 * 109.46941 * 329.99416 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0931 0.0000 4 6 3.6710 0.6028 -0.0036 5 6 4.9025 1.4124 -0.0083 6 8 5.9838 0.8738 -0.1491 7 7 4.8304 2.7496 0.1434 8 6 3.5342 3.3917 0.3752 9 6 2.8226 3.5759 -0.9404 10 1 3.2893 3.2480 -1.8574 11 6 1.5755 4.1633 -0.9732 12 7 1.0070 4.5622 0.1435 13 14 0.6937 4.3923 -2.6040 14 1 -0.1365 3.1947 -2.8903 15 1 -0.1776 5.5925 -2.5313 16 1 1.6941 4.5715 -3.6868 17 6 6.0475 3.5617 0.0706 18 6 7.2875 2.9216 -0.5569 19 6 7.2260 3.1492 0.9549 20 6 3.5790 -0.7583 0.0044 21 6 4.7390 -1.7203 0.0101 22 8 2.2852 -1.0935 0.0064 23 1 -0.3633 -1.0276 0.0056 24 1 -0.3633 0.5187 0.8872 25 1 -0.3632 0.5090 -0.8927 26 1 1.9596 2.1230 -0.0004 27 1 2.9299 2.7643 1.0304 28 1 3.6887 4.3635 0.8439 29 1 0.1298 4.9757 0.1204 30 1 5.8922 4.6277 -0.0959 31 1 7.1978 1.8961 -0.9151 32 1 7.9481 3.5664 -1.1364 33 1 7.8462 3.9437 1.3698 34 1 7.0956 2.2739 1.5911 35 1 5.0187 -1.9462 1.0390 36 1 4.4505 -2.6403 -0.4984 37 1 5.5867 -1.2702 -0.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:19 Heat of formation + Delta-G solvation = 26.234396 kcal Electronic energy + Delta-G solvation = -20663.163119 eV Core-core repulsion = 17602.220005 eV Total energy + Delta-G solvation = -3060.943114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.86261 -39.35027 -35.75704 -34.75444 -32.35142 -32.26507 -31.81361 -28.91358 -27.35268 -24.64337 -23.31202 -22.77758 -21.83143 -21.37373 -19.64656 -17.63510 -16.70686 -16.20681 -15.73977 -15.63934 -15.08194 -14.57041 -14.13164 -13.93144 -13.26879 -12.95941 -12.90524 -12.73709 -12.57406 -12.45102 -12.23862 -12.11282 -12.00021 -11.24458 -10.98022 -10.94206 -10.86493 -10.60436 -10.30428 -10.19341 -9.68056 -9.59310 -8.92971 -8.70685 -8.57984 -7.73492 -7.43780 -6.28801 -4.33527 2.01412 2.91446 3.17118 3.24792 3.29640 3.39014 3.87559 4.04157 4.26056 4.60979 5.01796 5.13249 5.28916 5.45548 5.51244 5.61524 5.66289 5.77704 5.83080 5.93857 5.94958 6.10681 6.13824 6.21914 6.28221 6.42412 6.55274 6.73965 6.77670 6.80988 6.96190 7.16047 7.53911 7.61550 7.69971 7.84497 7.96448 8.30551 8.72873 9.05468 9.28706 10.74891 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.010496 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.783718 B = 2667.120972 C = 4217.280734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.066 4.066 3 C -0.161 4.161 4 C -0.228 4.228 5 C 0.592 3.408 6 O -0.570 6.570 7 N -0.561 5.561 8 C 0.224 3.776 9 C -0.529 4.529 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.887 5.887 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.087 3.913 18 C -0.200 4.200 19 C -0.195 4.195 20 C 0.045 3.955 21 C -0.073 4.073 22 O -0.187 6.187 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.225 0.775 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.268 0.732 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 -6.107 0.933 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.113 4.113 3 C -0.178 4.178 4 C -0.232 4.232 5 C 0.384 3.616 6 O -0.455 6.455 7 N -0.288 5.288 8 C 0.105 3.895 9 C -0.567 4.567 10 H 0.083 0.917 11 C -0.141 4.141 12 N -0.525 5.525 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.019 4.019 18 C -0.237 4.237 19 C -0.234 4.234 20 C -0.008 4.008 21 C -0.129 4.129 22 O -0.085 6.085 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.241 0.759 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.741 -6.518 0.953 7.135 hybrid contribution -0.641 0.543 -0.889 1.224 sum 2.100 -5.975 0.064 6.334 Atomic orbital electron populations 1.20139 0.85594 1.02425 1.03539 1.22308 0.93711 0.83840 1.11403 1.25020 0.89836 1.03370 0.99614 1.21172 0.94810 0.92581 1.14660 1.17271 0.86938 0.81722 0.75707 1.90444 1.28855 1.72485 1.53733 1.47411 1.08477 1.05081 1.67789 1.19982 0.78293 0.94159 0.97072 1.21482 1.02056 1.39491 0.93715 0.91732 1.24946 0.97242 0.94975 0.96909 1.69934 1.16537 1.39958 1.26095 0.86540 0.79714 0.78008 0.83744 1.20152 1.20895 1.19658 1.21552 0.80794 0.95112 1.04404 1.23833 0.99190 1.05429 0.95235 1.23181 1.02638 1.03147 0.94390 1.22526 0.83016 0.94067 1.01226 1.20460 0.92747 0.96315 1.03404 1.83553 1.15936 1.36394 1.72592 0.91693 0.90070 0.90263 0.75937 0.93023 0.94259 0.92181 0.85734 0.84406 0.90247 0.89453 0.89026 0.90447 0.91371 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.40 36.01 0.37 -0.57 16 2 C -0.07 -1.30 7.28 -35.74 -0.26 -1.56 16 3 C -0.16 -3.59 7.99 -37.46 -0.30 -3.89 16 4 C -0.23 -5.01 6.05 -103.28 -0.62 -5.64 16 5 C 0.59 13.27 7.38 -12.54 -0.09 13.18 16 6 O -0.57 -12.53 10.58 5.27 0.06 -12.47 16 7 N -0.56 -12.44 2.85 -168.74 -0.48 -12.92 16 8 C 0.22 5.36 4.75 -5.19 -0.02 5.34 16 9 C -0.53 -13.37 6.68 -34.44 -0.23 -13.60 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.06 1.57 4.60 -17.82 -0.08 1.49 16 12 N -0.89 -22.91 13.24 55.43 0.73 -22.18 16 13 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.09 1.68 6.57 -67.93 -0.45 1.24 16 18 C -0.20 -3.57 9.63 -26.73 -0.26 -3.82 16 19 C -0.19 -3.34 9.88 -26.73 -0.26 -3.60 16 20 C 0.04 0.87 7.37 -34.97 -0.26 0.61 16 21 C -0.07 -1.12 9.97 36.00 0.36 -0.76 16 22 O -0.19 -3.62 10.52 7.65 0.08 -3.54 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.22 5.42 2.82 -52.49 -0.15 5.27 16 27 H 0.05 1.29 5.23 -51.93 -0.27 1.02 16 28 H 0.04 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.13 2.28 8.14 -51.93 -0.42 1.86 16 31 H 0.14 2.77 5.14 -52.43 -0.27 2.50 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.70 7.65 -51.93 -0.40 1.30 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.74 6.36 -51.93 -0.33 1.41 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -27.35 303.08 -6.93 -34.28 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.76 Total: 8.97 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.11 Total: -11.58 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.25 Total: -35.10 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.14 Total: -16.01 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.35 -6.93 -34.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.511 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds