Wall clock time and date at job start Mon Mar 30 2020 07:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34178 * 125.44218 * 2 1 4 4 C 1.47013 * 105.95787 * 180.14513 * 3 2 1 5 5 C 1.47379 * 127.19538 * 179.83441 * 4 3 2 6 6 O 1.21611 * 120.00277 * 187.54057 * 5 4 3 7 7 N 1.34775 * 119.99827 * 7.54156 * 5 4 3 8 8 C 1.46502 * 120.00114 * 2.83557 * 7 5 4 9 9 C 1.50696 * 109.46857 * 278.33638 * 8 7 5 10 10 H 1.07994 * 120.00397 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99729 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99756 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99880 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47178 * 90.00210 * 13 11 9 15 15 H 1.48494 * 109.47271 * 209.99820 * 13 11 9 16 16 H 1.48504 * 109.47345 * 330.00428 * 13 11 9 17 17 C 1.46498 * 119.99968 * 183.10875 * 7 5 4 18 18 C 1.53005 * 117.49874 * 16.77242 * 17 7 5 19 19 C 1.53001 * 117.49906 * 308.14894 * 17 7 5 20 20 C 1.36420 * 105.61753 * 359.57347 * 4 3 2 21 21 C 1.50694 * 125.80591 * 180.26342 * 20 4 3 22 22 O 1.33652 * 108.38946 * 0.25872 * 20 4 3 23 23 H 1.08993 * 109.46965 * 180.31260 * 1 2 3 24 24 H 1.09002 * 109.46836 * 300.31145 * 1 2 3 25 25 H 1.08995 * 109.46604 * 60.30939 * 1 2 3 26 26 H 1.08002 * 127.01944 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.47026 * 38.33792 * 8 7 5 28 28 H 1.08999 * 109.47314 * 158.33105 * 8 7 5 29 29 H 0.97002 * 119.99912 * 179.97438 * 12 11 9 30 30 H 1.09005 * 115.55267 * 162.47866 * 17 7 5 31 31 H 1.08996 * 117.49970 * 359.97438 * 18 17 7 32 32 H 1.09003 * 117.49699 * 145.02260 * 18 17 7 33 33 H 1.09000 * 117.50131 * 214.97642 * 19 17 7 34 34 H 1.08990 * 117.50023 * 359.97438 * 19 17 7 35 35 H 1.08994 * 109.47628 * 89.99875 * 21 20 4 36 36 H 1.09004 * 109.47169 * 210.00091 * 21 20 4 37 37 H 1.09000 * 109.46941 * 329.99416 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0931 0.0000 4 6 3.6710 0.6028 -0.0036 5 6 4.9025 1.4124 -0.0083 6 8 5.9838 0.8738 -0.1491 7 7 4.8304 2.7496 0.1434 8 6 3.5342 3.3917 0.3752 9 6 2.8226 3.5759 -0.9404 10 1 3.2893 3.2480 -1.8574 11 6 1.5755 4.1633 -0.9732 12 7 1.0070 4.5622 0.1435 13 14 0.6937 4.3923 -2.6040 14 1 -0.1365 3.1947 -2.8903 15 1 -0.1776 5.5925 -2.5313 16 1 1.6941 4.5715 -3.6868 17 6 6.0475 3.5617 0.0706 18 6 7.2875 2.9216 -0.5569 19 6 7.2260 3.1492 0.9549 20 6 3.5790 -0.7583 0.0044 21 6 4.7390 -1.7203 0.0101 22 8 2.2852 -1.0935 0.0064 23 1 -0.3633 -1.0276 0.0056 24 1 -0.3633 0.5187 0.8872 25 1 -0.3632 0.5090 -0.8927 26 1 1.9596 2.1230 -0.0004 27 1 2.9299 2.7643 1.0304 28 1 3.6887 4.3635 0.8439 29 1 0.1298 4.9757 0.1204 30 1 5.8922 4.6277 -0.0959 31 1 7.1978 1.8961 -0.9151 32 1 7.9481 3.5664 -1.1364 33 1 7.8462 3.9437 1.3698 34 1 7.0956 2.2739 1.5911 35 1 5.0187 -1.9462 1.0390 36 1 4.4505 -2.6403 -0.4984 37 1 5.5867 -1.2702 -0.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:19 Heat of formation + Delta-G solvation = 12.030307 kcal Electronic energy + Delta-G solvation = -20663.779055 eV Core-core repulsion = 17602.220005 eV Total energy + Delta-G solvation = -3061.559049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.42162 -40.99243 -37.36008 -36.48777 -34.17307 -33.71732 -33.37648 -30.23717 -29.24338 -26.17728 -24.95719 -24.51711 -23.27703 -22.93550 -21.22164 -19.27073 -18.64270 -17.86846 -17.29750 -17.16502 -16.69750 -16.38099 -15.67359 -15.58520 -14.83422 -14.43090 -14.39674 -14.26401 -14.11898 -13.99498 -13.77188 -13.44066 -13.26977 -13.01858 -12.72327 -12.44785 -12.38825 -12.21883 -12.09747 -11.90499 -11.47975 -11.15629 -10.71943 -10.40977 -10.32309 -9.33797 -9.06172 -8.21930 -6.33339 0.44319 1.28313 1.39512 1.42511 1.51091 1.90324 2.23147 2.36232 2.44939 3.05518 3.11808 3.66971 3.77302 4.00551 4.07999 4.22356 4.25576 4.42177 4.58428 4.65743 4.71006 4.72323 4.74046 4.83160 4.93343 4.95068 5.01661 5.11917 5.17508 5.29315 5.36095 5.45857 5.66132 5.84115 5.95652 6.05040 6.26615 6.50150 6.78543 7.27443 7.38818 8.81083 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.010496 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.783718 B = 2667.120972 C = 4217.280734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.266 4.266 5 C 0.583 3.417 6 O -0.573 6.573 7 N -0.568 5.568 8 C 0.242 3.758 9 C -0.531 4.531 10 H 0.044 0.956 11 C 0.032 3.968 12 N -0.909 5.909 13 Si 0.944 3.056 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.055 3.945 18 C -0.192 4.192 19 C -0.173 4.173 20 C 0.055 3.945 21 C -0.069 4.069 22 O -0.180 6.180 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.204 0.796 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.272 0.728 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -7.057 0.608 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 C -0.215 4.215 4 C -0.270 4.270 5 C 0.375 3.625 6 O -0.458 6.458 7 N -0.295 5.295 8 C 0.121 3.879 9 C -0.570 4.570 10 H 0.063 0.937 11 C -0.169 4.169 12 N -0.547 5.547 13 Si 0.769 3.231 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.204 1.204 17 C -0.050 4.050 18 C -0.229 4.229 19 C -0.212 4.212 20 C 0.001 3.999 21 C -0.125 4.125 22 O -0.078 6.078 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.220 0.780 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.760 -7.472 0.633 7.990 hybrid contribution -0.612 0.799 -0.765 1.264 sum 2.148 -6.673 -0.132 7.011 Atomic orbital electron populations 1.20303 0.82724 1.04616 1.03983 1.22888 0.95289 0.83179 1.09204 1.24843 0.90857 1.03395 1.02453 1.21378 0.94642 0.93967 1.17041 1.17455 0.87323 0.81894 0.75809 1.90440 1.28820 1.72504 1.54034 1.47411 1.08739 1.05385 1.67973 1.19622 0.79063 0.92991 0.96194 1.21391 1.02549 1.39800 0.93259 0.93719 1.25461 0.97504 0.94555 0.99391 1.69996 1.16911 1.40304 1.27477 0.85759 0.78676 0.78376 0.80311 1.19225 1.20131 1.20360 1.21853 0.80596 0.95346 1.07162 1.23780 0.98394 1.04534 0.96176 1.23195 1.01004 1.03209 0.93769 1.23207 0.83846 0.93998 0.98823 1.20588 0.90604 0.96439 1.04871 1.83593 1.15955 1.36050 1.72215 0.88625 0.89258 0.90071 0.77959 0.94437 0.95782 0.91833 0.85122 0.86617 0.87402 0.86090 0.90619 0.88521 0.88219 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.40 71.24 0.74 -1.03 16 2 C -0.06 -2.26 7.28 24.76 0.18 -2.08 16 3 C -0.20 -8.99 7.99 23.65 0.19 -8.80 16 4 C -0.27 -11.87 6.05 -18.99 -0.11 -11.99 16 5 C 0.58 26.70 7.38 86.65 0.64 27.34 16 6 O -0.57 -25.38 10.58 -4.07 -0.04 -25.42 16 7 N -0.57 -25.90 2.85 -806.03 -2.30 -28.19 16 8 C 0.24 12.01 4.75 85.63 0.41 12.41 16 9 C -0.53 -27.64 6.68 25.60 0.17 -27.47 16 10 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 11 C 0.03 1.65 4.60 84.66 0.39 2.04 16 12 N -0.91 -47.46 13.24 21.45 0.28 -47.18 16 13 Si 0.94 40.76 29.54 68.60 2.03 42.79 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.05 2.13 6.57 44.99 0.30 2.42 16 18 C -0.19 -6.65 9.63 30.60 0.29 -6.35 16 19 C -0.17 -5.72 9.88 30.60 0.30 -5.42 16 20 C 0.05 2.07 7.37 25.26 0.19 2.26 16 21 C -0.07 -1.98 9.97 71.23 0.71 -1.27 16 22 O -0.18 -6.73 10.52 4.47 0.05 -6.68 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.20 10.17 2.82 -2.91 -0.01 10.16 16 27 H 0.04 1.98 5.23 -2.39 -0.01 1.97 16 28 H 0.02 1.24 8.01 -2.39 -0.02 1.22 16 29 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.13 4.80 8.14 -2.38 -0.02 4.78 16 31 H 0.12 4.63 5.14 -10.36 -0.05 4.57 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.08 2.76 7.65 -2.39 -0.02 2.74 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.09 3.00 6.36 -2.39 -0.02 2.99 16 Total: -1.00 -59.50 303.08 5.45 -54.05 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.05 Total: 28.57 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.39 Total: -17.94 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.01 Total: -75.37 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: 0.00 Total: -32.10 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -59.50 5.45 -54.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.081 kcal (2) G-P(sol) polarization free energy of solvation -59.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds