Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47220 * 270.00144 * 3 2 1 5 5 H 1.48501 * 109.47180 * 30.00286 * 3 2 1 6 6 H 1.48501 * 109.47224 * 150.00365 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00273 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47192 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47332 * 179.97438 * 11 10 9 13 13 C 1.34227 * 117.00158 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99748 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47009 * 180.02562 * 15 13 12 17 17 C 1.38133 * 120.03523 * 265.00221 * 16 15 13 18 18 C 1.38265 * 120.07407 * 180.29677 * 17 16 15 19 19 C 1.38306 * 120.14784 * 359.44555 * 18 17 16 20 20 C 1.38089 * 120.07673 * 0.55309 * 19 18 17 21 21 C 1.38886 * 120.04213 * 85.01862 * 16 15 13 22 22 N 1.39676 * 120.07159 * 359.96227 * 21 16 15 23 23 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47321 * 59.99751 * 9 7 2 25 25 H 1.09000 * 109.47656 * 300.00381 * 9 7 2 26 26 H 1.08996 * 109.47029 * 60.00290 * 10 9 7 27 27 H 1.09000 * 109.46526 * 300.00143 * 10 9 7 28 28 H 1.09008 * 109.47616 * 59.99641 * 11 10 9 29 29 H 1.09000 * 109.47537 * 300.00163 * 11 10 9 30 30 H 1.08997 * 109.47250 * 60.00036 * 15 13 12 31 31 H 1.09000 * 109.47074 * 300.00102 * 15 13 12 32 32 H 1.08002 * 119.95961 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92315 * 179.69829 * 18 17 16 34 34 H 1.08003 * 119.96002 * 180.27453 * 19 18 17 35 35 H 1.07998 * 120.03790 * 179.70139 * 20 19 18 36 36 H 0.96994 * 120.00263 * 359.97438 * 22 21 16 37 37 H 0.97003 * 119.99650 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3661 -4.1816 -0.0033 14 8 8.1022 -3.2234 -0.0029 15 6 7.9420 -5.5742 -0.0032 16 6 9.4470 -5.4954 -0.0033 17 6 10.1428 -5.5633 -1.1946 18 6 11.5239 -5.4973 -1.1950 19 6 12.2127 -5.3515 -0.0046 20 6 11.5233 -5.2829 1.1899 21 6 10.1359 -5.3547 1.1944 22 7 9.4354 -5.2852 2.4008 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 3.6578 -3.1499 -0.8925 27 1 3.6584 -3.1510 0.8875 28 1 5.9148 -2.1236 0.8882 29 1 5.9148 -2.1222 -0.8917 30 1 7.6057 -6.1065 -0.8929 31 1 7.6064 -6.1061 0.8870 32 1 9.6077 -5.6726 -2.1263 33 1 12.0657 -5.5555 -2.1275 34 1 13.2913 -5.2958 -0.0089 35 1 12.0621 -5.1739 2.1195 36 1 8.4667 -5.3349 2.4027 37 1 9.9176 -5.1866 3.2367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = -78.530774 kcal Electronic energy + Delta-G solvation = -18714.924768 eV Core-core repulsion = 15649.438695 eV Total energy + Delta-G solvation = -3065.486073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57360 -39.35024 -36.49339 -34.75409 -34.08306 -32.93350 -31.83182 -29.29587 -28.17789 -27.10014 -23.37624 -22.59034 -21.87160 -20.55794 -20.11439 -17.56534 -17.42520 -17.24419 -16.85705 -16.32688 -16.05002 -15.48174 -14.51703 -14.23088 -14.10652 -14.03118 -13.46806 -13.32117 -12.78936 -12.77742 -12.70008 -12.11329 -11.90789 -11.48274 -11.21816 -11.05747 -10.96122 -10.85239 -10.53187 -10.42676 -10.00819 -9.81639 -9.73632 -9.26193 -8.96925 -8.57970 -7.71163 -6.08294 -4.07339 1.18517 1.48582 2.31220 2.87983 3.29036 3.36619 3.40154 3.61442 3.79902 4.41917 4.43418 4.61730 4.88111 4.95518 5.02459 5.20671 5.25061 5.30403 5.41296 5.45714 5.49604 5.67334 5.83235 5.86934 6.09609 6.32974 6.36157 6.37927 6.47118 6.67586 6.71164 6.80952 7.20016 7.25415 7.31218 7.49254 7.71533 7.92203 8.48526 8.95964 9.53305 11.04878 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040993 B = 0.003123 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.884146 B = 8963.466750 C = 9050.617898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.066 3.934 12 O -0.359 6.359 13 C 0.451 3.549 14 O -0.500 6.500 15 C -0.066 4.066 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.181 4.181 19 C -0.069 4.069 20 C -0.200 4.200 21 C 0.236 3.764 22 N -0.876 5.876 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.396 0.604 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.851 -13.763 1.644 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.007 4.007 12 O -0.276 6.276 13 C 0.293 3.707 14 O -0.387 6.387 15 C -0.104 4.104 16 C -0.160 4.160 17 C -0.074 4.074 18 C -0.201 4.201 19 C -0.088 4.088 20 C -0.223 4.223 21 C 0.131 3.869 22 N -0.414 5.414 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.225 0.775 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 22.888 -13.319 1.624 26.531 hybrid contribution 0.162 1.195 0.327 1.249 sum 23.051 -12.124 1.950 26.118 Atomic orbital electron populations 1.69908 1.06282 1.26986 1.50848 1.25016 0.94758 0.99179 0.94451 0.86785 0.80360 0.83573 0.78626 1.20179 1.21266 1.19007 1.21055 0.89043 0.94668 1.51212 0.90788 1.19521 0.97526 0.91114 0.96651 1.21555 0.88796 1.00748 1.02785 1.23470 0.97000 0.78206 1.01997 1.86502 1.23472 1.34194 1.83392 1.23650 0.81272 0.92464 0.73329 1.90680 1.60618 1.42971 1.44440 1.20101 0.92145 0.91991 1.06178 1.18738 0.92878 1.11720 0.92676 1.20790 0.94285 0.95925 0.96448 1.20845 0.94020 1.07185 0.98013 1.20882 0.99411 0.96401 0.92064 1.20528 0.91823 1.11117 0.98803 1.17545 0.91280 0.92168 0.85931 1.42557 1.09256 1.83835 1.05790 0.92633 0.96330 0.96732 0.91528 0.91565 0.91692 0.91607 0.86740 0.87780 0.86086 0.86330 0.86234 0.86280 0.77472 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -2.01 5.53 -26.73 -0.15 -2.16 16 11 C 0.07 1.16 5.47 37.15 0.20 1.37 16 12 O -0.36 -5.66 10.22 -39.25 -0.40 -6.06 16 13 C 0.45 6.49 7.95 36.01 0.29 6.77 16 14 O -0.50 -8.76 15.78 -18.75 -0.30 -9.05 16 15 C -0.07 -0.67 5.38 -29.03 -0.16 -0.83 16 16 C -0.16 -1.72 4.39 -104.42 -0.46 -2.18 16 17 C -0.06 -0.58 9.68 -39.61 -0.38 -0.97 16 18 C -0.18 -1.75 10.04 -39.55 -0.40 -2.15 16 19 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 20 C -0.20 -1.97 9.90 -39.38 -0.39 -2.36 16 21 C 0.24 2.51 6.73 -83.79 -0.56 1.95 16 22 N -0.88 -7.49 8.99 32.41 0.29 -7.20 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.44 7.20 -51.92 -0.37 0.06 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.13 8.13 -51.92 -0.42 0.71 16 29 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 30 H 0.11 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.10 0.83 6.82 -51.93 -0.35 0.48 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.40 3.24 6.94 -40.82 -0.28 2.95 16 37 H 0.40 2.58 8.84 -40.82 -0.36 2.22 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -33.48 317.96 -7.61 -41.09 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.15 Total: 1.62 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.95 Total: -15.28 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.06 Total: -34.20 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.70 Total: -15.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.48 -7.61 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.441 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds