Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47220 * 270.00144 * 3 2 1 5 5 H 1.48501 * 109.47180 * 30.00286 * 3 2 1 6 6 H 1.48501 * 109.47224 * 150.00365 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99729 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00273 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47192 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.47332 * 179.97438 * 11 10 9 13 13 C 1.34227 * 117.00158 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99748 * 179.97438 * 13 12 11 16 16 C 1.50699 * 109.47009 * 180.02562 * 15 13 12 17 17 C 1.38133 * 120.03523 * 265.00221 * 16 15 13 18 18 C 1.38265 * 120.07407 * 180.29677 * 17 16 15 19 19 C 1.38306 * 120.14784 * 359.44555 * 18 17 16 20 20 C 1.38089 * 120.07673 * 0.55309 * 19 18 17 21 21 C 1.38886 * 120.04213 * 85.01862 * 16 15 13 22 22 N 1.39676 * 120.07159 * 359.96227 * 21 16 15 23 23 H 0.97003 * 119.99794 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47321 * 59.99751 * 9 7 2 25 25 H 1.09000 * 109.47656 * 300.00381 * 9 7 2 26 26 H 1.08996 * 109.47029 * 60.00290 * 10 9 7 27 27 H 1.09000 * 109.46526 * 300.00143 * 10 9 7 28 28 H 1.09008 * 109.47616 * 59.99641 * 11 10 9 29 29 H 1.09000 * 109.47537 * 300.00163 * 11 10 9 30 30 H 1.08997 * 109.47250 * 60.00036 * 15 13 12 31 31 H 1.09000 * 109.47074 * 300.00102 * 15 13 12 32 32 H 1.08002 * 119.95961 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92315 * 179.69829 * 18 17 16 34 34 H 1.08003 * 119.96002 * 180.27453 * 19 18 17 35 35 H 1.07998 * 120.03790 * 179.70139 * 20 19 18 36 36 H 0.96994 * 120.00263 * 359.97438 * 22 21 16 37 37 H 0.97003 * 119.99650 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3661 -4.1816 -0.0033 14 8 8.1022 -3.2234 -0.0029 15 6 7.9420 -5.5742 -0.0032 16 6 9.4470 -5.4954 -0.0033 17 6 10.1428 -5.5633 -1.1946 18 6 11.5239 -5.4973 -1.1950 19 6 12.2127 -5.3515 -0.0046 20 6 11.5233 -5.2829 1.1899 21 6 10.1359 -5.3547 1.1944 22 7 9.4354 -5.2852 2.4008 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 3.6578 -3.1499 -0.8925 27 1 3.6584 -3.1510 0.8875 28 1 5.9148 -2.1236 0.8882 29 1 5.9148 -2.1222 -0.8917 30 1 7.6057 -6.1065 -0.8929 31 1 7.6064 -6.1061 0.8870 32 1 9.6077 -5.6726 -2.1263 33 1 12.0657 -5.5555 -2.1275 34 1 13.2913 -5.2958 -0.0089 35 1 12.0621 -5.1739 2.1195 36 1 8.4667 -5.3349 2.4027 37 1 9.9176 -5.1866 3.2367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = -99.069122 kcal Electronic energy + Delta-G solvation = -18715.815377 eV Core-core repulsion = 15649.438695 eV Total energy + Delta-G solvation = -3066.376682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65517 -40.19470 -37.77585 -35.93198 -35.44023 -33.98322 -33.59877 -30.14522 -29.49199 -28.30322 -25.01142 -23.40588 -22.84423 -22.08873 -21.34087 -19.03578 -18.62977 -18.22994 -17.97018 -17.48485 -17.19903 -16.39607 -16.17085 -15.78794 -14.98236 -14.84342 -14.73710 -14.52615 -14.12915 -14.02804 -13.85059 -13.60620 -13.17781 -12.83402 -12.59067 -12.20061 -12.10085 -12.00618 -11.89120 -11.77535 -11.53502 -11.45723 -11.39200 -11.35898 -10.78887 -9.70971 -8.41041 -8.31556 -6.36506 0.43524 0.75988 1.19758 1.35744 1.37036 1.48765 1.76278 2.34342 2.94178 3.03571 3.06601 3.62795 3.89434 3.93584 3.99465 4.03824 4.20891 4.35001 4.37447 4.51296 4.63801 4.72300 4.74069 4.75756 4.95105 4.98969 5.15779 5.34310 5.40152 5.47339 5.53901 5.61899 5.62865 5.76014 6.04230 6.24569 6.56848 6.70434 6.76428 6.90748 7.28088 8.84997 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040993 B = 0.003123 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.884146 B = 8963.466750 C = 9050.617898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.009 4.009 10 C -0.092 4.092 11 C 0.075 3.925 12 O -0.360 6.360 13 C 0.453 3.547 14 O -0.532 6.532 15 C -0.059 4.059 16 C -0.177 4.177 17 C -0.070 4.070 18 C -0.193 4.193 19 C -0.074 4.074 20 C -0.214 4.214 21 C 0.221 3.779 22 N -0.872 5.872 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.398 0.602 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.098 -13.734 1.705 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.055 0.945 9 C -0.047 4.047 10 C -0.130 4.130 11 C 0.002 3.998 12 O -0.277 6.277 13 C 0.297 3.703 14 O -0.422 6.422 15 C -0.096 4.096 16 C -0.182 4.182 17 C -0.088 4.088 18 C -0.213 4.213 19 C -0.093 4.093 20 C -0.236 4.236 21 C 0.115 3.885 22 N -0.411 5.411 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.227 0.773 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 25.150 -13.318 1.698 28.509 hybrid contribution -0.533 1.080 0.310 1.244 sum 24.617 -12.238 2.008 27.564 Atomic orbital electron populations 1.70057 1.08253 1.28267 1.52373 1.25994 0.95632 1.03478 0.94034 0.85674 0.79489 0.78304 0.79302 1.19087 1.20812 1.17093 1.21403 0.91672 0.93393 1.50733 0.94523 1.19449 0.94343 0.93828 0.97077 1.21314 0.90735 0.98271 1.02632 1.23124 0.95111 0.79394 1.02179 1.86501 1.24722 1.32837 1.83631 1.24498 0.80194 0.93794 0.71784 1.90667 1.60995 1.44410 1.46081 1.20228 0.91632 0.89383 1.08345 1.18923 0.93260 1.12851 0.93136 1.21077 0.94932 0.95923 0.96897 1.21149 0.94072 1.07039 0.99010 1.21232 1.00708 0.95497 0.91829 1.20836 0.91854 1.11106 0.99815 1.17797 0.91903 0.92282 0.86481 1.42555 1.09373 1.83439 1.05748 0.92367 0.95741 0.95906 0.91802 0.91725 0.91468 0.91516 0.84447 0.85515 0.84964 0.84682 0.84038 0.84741 0.77326 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.33 5.47 84.66 0.46 0.80 16 3 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 8 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.58 5.53 30.59 0.17 -3.41 16 11 C 0.08 2.53 5.47 71.98 0.39 2.93 16 12 O -0.36 -10.76 10.22 -51.39 -0.53 -11.29 16 13 C 0.45 12.29 7.95 71.24 0.57 12.85 16 14 O -0.53 -18.00 15.78 21.96 0.35 -17.65 16 15 C -0.06 -1.07 5.38 29.10 0.16 -0.91 16 16 C -0.18 -3.62 4.39 -19.73 -0.09 -3.71 16 17 C -0.07 -1.36 9.68 22.25 0.22 -1.14 16 18 C -0.19 -3.42 10.04 22.29 0.22 -3.20 16 19 C -0.07 -1.25 10.04 22.25 0.22 -1.03 16 20 C -0.21 -3.86 9.90 22.40 0.22 -3.63 16 21 C 0.22 4.39 6.73 38.21 0.26 4.64 16 22 N -0.87 -13.57 8.99 -51.37 -0.46 -14.03 16 23 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 24 H 0.02 1.11 7.20 -2.38 -0.02 1.09 16 25 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.23 8.13 -2.38 -0.02 2.21 16 29 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 30 H 0.14 1.86 8.05 -2.39 -0.02 1.84 16 31 H 0.13 1.71 6.82 -2.39 -0.02 1.69 16 32 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.40 5.84 6.94 -92.71 -0.64 5.20 16 37 H 0.41 4.66 8.84 -92.71 -0.82 3.84 16 Total: -1.00 -72.02 317.96 4.28 -67.74 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -0.43 Total: 15.04 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.17 Total: -26.69 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -0.16 Total: -73.29 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.18 Total: -28.94 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -72.02 4.28 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.327 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds