Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38010 * 119.99935 * 2 1 4 4 C 1.38209 * 120.23559 * 180.23341 * 3 2 1 5 5 C 1.39036 * 120.22431 * 359.49554 * 4 3 2 6 6 N 1.39718 * 119.99898 * 180.27406 * 5 4 3 7 7 C 1.38624 * 120.00269 * 0.24678 * 5 4 3 8 8 C 1.39542 * 119.76257 * 0.02562 * 7 5 4 9 9 C 1.47750 * 120.11324 * 180.02562 * 8 7 5 10 10 O 1.21465 * 120.00371 * 173.75345 * 9 8 7 11 11 O 1.34703 * 119.99708 * 353.75464 * 9 8 7 12 12 C 1.45199 * 117.00169 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47579 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47043 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00134 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47231 * 59.99774 * 19 17 15 21 21 H 1.48500 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47106 * 300.00028 * 19 17 15 23 23 H 1.08996 * 109.47284 * 263.66827 * 1 2 3 24 24 H 1.09000 * 109.47409 * 23.67146 * 1 2 3 25 25 H 1.09003 * 109.47256 * 143.66966 * 1 2 3 26 26 H 1.07998 * 119.88541 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.88797 * 179.76234 * 4 3 2 28 28 H 0.96997 * 119.99988 * 0.02562 * 6 5 4 29 29 H 0.97001 * 119.99950 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.11714 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.47313 * 300.00353 * 12 11 9 32 32 H 1.09007 * 109.46546 * 60.00073 * 12 11 9 33 33 H 1.08995 * 109.47238 * 300.00585 * 13 12 11 34 34 H 1.09002 * 109.46563 * 60.00738 * 13 12 11 35 35 H 1.08995 * 109.47307 * 300.00303 * 14 13 12 36 36 H 1.08994 * 109.47184 * 60.00482 * 14 13 12 37 37 H 0.96998 * 120.00535 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1952 0.0000 4 6 3.5791 1.2009 -0.0049 5 6 4.2840 0.0025 0.0008 6 7 5.6811 0.0138 0.0016 7 6 3.6006 -1.2036 0.0062 8 6 2.2052 -1.2091 0.0053 9 6 1.4690 -2.4901 0.0116 10 8 0.2597 -2.4952 0.1254 11 8 2.1390 -3.6525 -0.1088 12 6 1.3511 -4.8721 -0.0940 13 6 2.2783 -6.0802 -0.2417 14 6 1.4480 -7.3652 -0.2267 15 6 2.3613 -8.5551 -0.3715 16 1 3.4274 -8.4094 -0.4653 17 6 1.8359 -9.8298 -0.3854 18 7 0.5378 -10.0073 -0.2718 19 14 2.9680 -11.3047 -0.5656 20 1 3.9347 -11.3273 0.5614 21 1 2.1621 -12.5519 -0.5522 22 1 3.7073 -11.2073 -1.8499 23 1 -0.3633 -0.1133 1.0213 24 1 -0.3634 0.9412 -0.4126 25 1 -0.3634 -0.8279 -0.6088 26 1 1.6552 2.1294 0.0004 27 1 4.1134 2.1394 -0.0087 28 1 6.1593 0.8577 -0.0014 29 1 6.1729 -0.8223 0.0059 30 1 4.1463 -2.1356 0.0101 31 1 0.8088 -4.9429 0.8488 32 1 0.6413 -4.8561 -0.9212 33 1 2.8203 -6.0092 -1.1846 34 1 2.9883 -6.0964 0.5853 35 1 0.9057 -7.4365 0.7160 36 1 0.7383 -7.3488 -1.0538 37 1 0.1681 -10.9040 -0.2819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -79.984378 kcal Electronic energy + Delta-G solvation = -18729.629984 eV Core-core repulsion = 15664.080879 eV Total energy + Delta-G solvation = -3065.549106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54049 -39.06681 -36.53528 -34.98142 -33.98167 -31.92533 -31.25367 -30.78527 -27.20385 -26.08498 -24.34923 -23.12132 -21.73394 -20.61379 -20.21933 -17.96222 -17.21852 -16.69472 -16.24092 -16.13299 -15.69259 -15.03130 -14.54153 -14.43364 -14.29232 -13.75931 -13.48421 -13.15447 -12.72967 -12.29206 -12.15504 -11.98376 -11.89002 -11.77554 -11.47859 -10.94023 -10.64586 -10.61378 -10.56882 -10.32969 -9.98606 -9.69412 -9.47089 -9.18366 -9.16350 -8.37608 -7.68714 -6.02467 -4.05639 0.67795 1.35155 2.68448 2.92927 3.32894 3.37223 3.39744 3.60111 3.71415 4.43887 4.58500 4.76195 4.90561 5.06657 5.23343 5.33326 5.39953 5.61566 5.64377 5.66610 5.71710 5.81683 5.96862 6.04430 6.08642 6.21608 6.39467 6.52331 6.56227 6.67535 6.89653 7.00946 7.20259 7.49203 7.61377 7.72979 7.95615 8.00386 8.37055 9.00405 9.58507 11.08970 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.003357 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.365139 B = 8338.994941 C = 9208.054067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.088 4.088 4 C -0.163 4.163 5 C 0.195 3.805 6 N -0.879 5.879 7 C -0.137 4.137 8 C -0.076 4.076 9 C 0.501 3.499 10 O -0.502 6.502 11 O -0.354 6.354 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.397 0.603 29 H 0.401 0.599 30 H 0.138 0.862 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 23.764 0.577 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.106 4.106 4 C -0.186 4.186 5 C 0.091 3.909 6 N -0.419 5.419 7 C -0.159 4.159 8 C -0.078 4.078 9 C 0.346 3.654 10 O -0.392 6.392 11 O -0.270 6.270 12 C -0.004 4.004 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.225 0.775 29 H 0.229 0.771 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.288 23.557 0.613 24.389 hybrid contribution 0.888 -0.932 -0.059 1.288 sum 7.175 22.625 0.555 23.742 Atomic orbital electron populations 1.21005 0.90134 1.02764 1.03343 1.19807 0.96787 0.91106 1.00289 1.20715 0.93290 0.97203 0.99405 1.20788 0.94414 0.96351 1.07065 1.17639 0.84434 0.93410 0.95404 1.42427 1.02855 1.10993 1.85641 1.20911 0.93113 0.97318 1.04599 1.18799 0.92788 0.90275 1.05953 1.21167 0.85976 0.84856 0.73412 1.90773 1.15027 1.87896 1.45499 1.86541 1.42546 1.15237 1.82724 1.23509 0.94622 0.80065 1.02200 1.21762 0.98512 0.92563 1.01793 1.19045 0.95154 0.89391 0.97703 1.21139 0.93565 0.90892 1.50463 0.92499 1.25026 0.95074 0.99124 0.95218 1.69952 1.10959 1.22248 1.50205 0.86607 0.80595 0.81785 0.78716 1.20186 1.21259 1.20187 0.91065 0.92563 0.89136 0.85270 0.85809 0.77451 0.77101 0.84405 0.91441 0.91448 0.92175 0.92186 0.96213 0.96209 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.72 36.01 0.31 -1.05 16 2 C -0.08 -0.94 5.92 -104.19 -0.62 -1.56 16 3 C -0.09 -0.84 9.65 -39.68 -0.38 -1.22 16 4 C -0.16 -1.44 9.89 -39.30 -0.39 -1.83 16 5 C 0.19 1.90 6.75 -83.83 -0.57 1.33 16 6 N -0.88 -5.88 9.09 32.39 0.29 -5.59 16 7 C -0.14 -1.64 9.46 -38.95 -0.37 -2.01 16 8 C -0.08 -1.06 5.87 -105.01 -0.62 -1.67 16 9 C 0.50 8.33 7.83 34.62 0.27 8.60 16 10 O -0.50 -9.14 13.12 -19.24 -0.25 -9.39 16 11 O -0.35 -6.20 9.49 -40.50 -0.38 -6.58 16 12 C 0.07 1.31 5.48 37.16 0.20 1.51 16 13 C -0.11 -2.29 5.53 -26.73 -0.15 -2.43 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.51 8.04 -51.93 -0.42 0.10 16 25 H 0.09 1.26 5.85 -51.93 -0.30 0.95 16 26 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 27 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 28 H 0.40 1.77 8.84 -40.82 -0.36 1.41 16 29 H 0.40 2.31 8.84 -40.82 -0.36 1.95 16 30 H 0.14 1.62 7.63 -52.49 -0.40 1.21 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -31.99 318.81 -7.86 -39.85 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.19 Total: -0.04 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.85 Total: -13.42 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 1.03 Total: -31.82 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.64 Total: -15.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.99 -7.86 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.137 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds