Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38010 * 119.99935 * 2 1 4 4 C 1.38209 * 120.23559 * 180.23341 * 3 2 1 5 5 C 1.39036 * 120.22431 * 359.49554 * 4 3 2 6 6 N 1.39718 * 119.99898 * 180.27406 * 5 4 3 7 7 C 1.38624 * 120.00269 * 0.24678 * 5 4 3 8 8 C 1.39542 * 119.76257 * 0.02562 * 7 5 4 9 9 C 1.47750 * 120.11324 * 180.02562 * 8 7 5 10 10 O 1.21465 * 120.00371 * 173.75345 * 9 8 7 11 11 O 1.34703 * 119.99708 * 353.75464 * 9 8 7 12 12 C 1.45199 * 117.00169 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47579 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47043 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00134 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99981 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47231 * 59.99774 * 19 17 15 21 21 H 1.48500 * 109.47290 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.47106 * 300.00028 * 19 17 15 23 23 H 1.08996 * 109.47284 * 263.66827 * 1 2 3 24 24 H 1.09000 * 109.47409 * 23.67146 * 1 2 3 25 25 H 1.09003 * 109.47256 * 143.66966 * 1 2 3 26 26 H 1.07998 * 119.88541 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.88797 * 179.76234 * 4 3 2 28 28 H 0.96997 * 119.99988 * 0.02562 * 6 5 4 29 29 H 0.97001 * 119.99950 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.11714 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.47313 * 300.00353 * 12 11 9 32 32 H 1.09007 * 109.46546 * 60.00073 * 12 11 9 33 33 H 1.08995 * 109.47238 * 300.00585 * 13 12 11 34 34 H 1.09002 * 109.46563 * 60.00738 * 13 12 11 35 35 H 1.08995 * 109.47307 * 300.00303 * 14 13 12 36 36 H 1.08994 * 109.47184 * 60.00482 * 14 13 12 37 37 H 0.96998 * 120.00535 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1952 0.0000 4 6 3.5791 1.2009 -0.0049 5 6 4.2840 0.0025 0.0008 6 7 5.6811 0.0138 0.0016 7 6 3.6006 -1.2036 0.0062 8 6 2.2052 -1.2091 0.0053 9 6 1.4690 -2.4901 0.0116 10 8 0.2597 -2.4952 0.1254 11 8 2.1390 -3.6525 -0.1088 12 6 1.3511 -4.8721 -0.0940 13 6 2.2783 -6.0802 -0.2417 14 6 1.4480 -7.3652 -0.2267 15 6 2.3613 -8.5551 -0.3715 16 1 3.4274 -8.4094 -0.4653 17 6 1.8359 -9.8298 -0.3854 18 7 0.5378 -10.0073 -0.2718 19 14 2.9680 -11.3047 -0.5656 20 1 3.9347 -11.3273 0.5614 21 1 2.1621 -12.5519 -0.5522 22 1 3.7073 -11.2073 -1.8499 23 1 -0.3633 -0.1133 1.0213 24 1 -0.3634 0.9412 -0.4126 25 1 -0.3634 -0.8279 -0.6088 26 1 1.6552 2.1294 0.0004 27 1 4.1134 2.1394 -0.0087 28 1 6.1593 0.8577 -0.0014 29 1 6.1729 -0.8223 0.0059 30 1 4.1463 -2.1356 0.0101 31 1 0.8088 -4.9429 0.8488 32 1 0.6413 -4.8561 -0.9212 33 1 2.8203 -6.0092 -1.1846 34 1 2.9883 -6.0964 0.5853 35 1 0.9057 -7.4365 0.7160 36 1 0.7383 -7.3488 -1.0538 37 1 0.1681 -10.9040 -0.2819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -99.124705 kcal Electronic energy + Delta-G solvation = -18730.459971 eV Core-core repulsion = 15664.080879 eV Total energy + Delta-G solvation = -3066.379092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73034 -40.04656 -37.89998 -35.97946 -35.75459 -33.75722 -32.33523 -31.56357 -29.05056 -27.05499 -25.65984 -24.61747 -22.78772 -22.19425 -21.51728 -19.07446 -18.61577 -17.99931 -17.70599 -17.45745 -16.54041 -16.50099 -16.03319 -15.79803 -15.25125 -14.71871 -14.61941 -14.46989 -14.08734 -13.77363 -13.75085 -13.52081 -13.09214 -12.79575 -12.72097 -12.52234 -12.41768 -12.29191 -12.06515 -11.63822 -11.45118 -11.33310 -11.28789 -11.04103 -10.57386 -10.01943 -8.39894 -8.22074 -6.34097 -0.27558 0.55216 1.40920 1.44630 1.52188 1.54206 1.62556 2.41219 2.84054 2.98581 3.11581 3.58759 3.91711 3.98304 4.04638 4.08845 4.21717 4.37666 4.42107 4.62930 4.77891 4.80192 4.84489 4.86461 4.98003 5.05134 5.13095 5.24851 5.35168 5.42361 5.49314 5.62362 5.66834 5.78984 5.84608 6.18201 6.56282 6.68528 6.81586 7.02943 7.35427 8.90065 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.003357 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.365139 B = 8338.994941 C = 9208.054067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.153 4.153 5 C 0.198 3.802 6 N -0.867 5.867 7 C -0.153 4.153 8 C -0.102 4.102 9 C 0.496 3.504 10 O -0.526 6.526 11 O -0.354 6.354 12 C 0.079 3.921 13 C -0.093 4.093 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.265 1.265 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.411 0.589 29 H 0.406 0.594 30 H 0.132 0.868 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.067 0.933 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.183 25.764 0.442 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.099 4.099 4 C -0.175 4.175 5 C 0.092 3.908 6 N -0.407 5.407 7 C -0.177 4.177 8 C -0.104 4.104 9 C 0.343 3.657 10 O -0.418 6.418 11 O -0.271 6.271 12 C 0.005 3.995 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.190 1.190 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.178 0.822 27 H 0.177 0.823 28 H 0.242 0.758 29 H 0.235 0.765 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.681 25.587 0.478 27.024 hybrid contribution 0.190 -1.416 -0.012 1.429 sum 8.871 24.171 0.466 25.752 Atomic orbital electron populations 1.20928 0.90407 1.03064 1.02493 1.19987 0.96891 0.91547 1.01209 1.21061 0.93853 0.97199 0.97782 1.21217 0.94292 0.97304 1.04710 1.17740 0.85669 0.92952 0.94436 1.42428 1.01757 1.12176 1.84384 1.20902 0.92482 0.98332 1.05939 1.18791 0.93600 0.89086 1.08891 1.21857 0.86053 0.85272 0.72533 1.90763 1.16075 1.88103 1.46827 1.86524 1.42267 1.15168 1.83119 1.23153 0.94023 0.80516 1.01804 1.21454 0.97983 0.91165 1.02409 1.18926 0.94992 0.91679 0.95475 1.21597 0.94316 0.91955 1.50449 0.91625 1.26025 0.96707 1.02585 0.94599 1.70094 1.13050 1.23145 1.51100 0.85428 0.78448 0.77427 0.79313 1.18983 1.20892 1.19003 0.91811 0.89743 0.91963 0.82151 0.82257 0.75804 0.76525 0.84967 0.91899 0.91910 0.91497 0.91458 0.98490 0.98494 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 8.72 71.24 0.62 -2.00 16 2 C -0.09 -2.19 5.92 -19.58 -0.12 -2.31 16 3 C -0.08 -1.29 9.65 22.21 0.21 -1.07 16 4 C -0.15 -2.10 9.89 22.45 0.22 -1.87 16 5 C 0.20 3.33 6.75 38.17 0.26 3.59 16 6 N -0.87 -9.00 9.09 -51.44 -0.47 -9.47 16 7 C -0.15 -3.57 9.46 22.68 0.21 -3.36 16 8 C -0.10 -2.84 5.87 -20.11 -0.12 -2.95 16 9 C 0.50 17.15 7.83 70.34 0.55 17.70 16 10 O -0.53 -20.19 13.12 19.95 0.26 -19.92 16 11 O -0.35 -12.79 9.49 -56.13 -0.53 -13.32 16 12 C 0.08 3.09 5.48 71.98 0.39 3.49 16 13 C -0.09 -3.97 5.53 30.59 0.17 -3.80 16 14 C 0.03 1.42 4.97 29.85 0.15 1.57 16 15 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 19 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.08 1.41 8.04 -2.39 -0.02 1.39 16 25 H 0.06 1.81 5.85 -2.39 -0.01 1.79 16 26 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 27 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 28 H 0.41 2.12 8.84 -92.71 -0.82 1.30 16 29 H 0.41 3.72 8.84 -92.71 -0.82 2.90 16 30 H 0.13 3.10 7.63 -2.91 -0.02 3.08 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.50 8.14 -2.38 -0.02 2.49 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -70.56 318.81 4.28 -66.28 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -0.55 Total: 8.96 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 3.25 Total: -21.66 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.18 Total: -66.64 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.27 Total: -33.25 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.56 4.28 -66.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.842 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds