Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35651 * 117.00043 * 2 1 4 4 C 1.38702 * 120.15059 * 359.72132 * 3 2 1 5 5 C 1.38062 * 120.08181 * 179.74486 * 4 3 2 6 6 C 1.38540 * 120.39164 * 0.55665 * 5 4 3 7 7 C 1.50700 * 119.85130 * 179.72059 * 6 5 4 8 8 C 1.37797 * 120.29812 * 359.70163 * 6 5 4 9 9 C 1.39707 * 119.90708 * 0.02562 * 8 6 5 10 10 C 1.47539 * 120.18681 * 180.02562 * 9 8 6 11 11 O 1.21586 * 119.99311 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00210 * 359.97438 * 10 9 8 13 13 C 1.46500 * 119.99770 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47091 * 324.99634 * 13 12 10 15 15 C 1.52994 * 109.47378 * 84.99842 * 13 12 10 16 16 C 1.50700 * 109.46815 * 204.99836 * 13 12 10 17 17 H 1.08001 * 120.00022 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00072 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00338 * 180.02562 * 18 16 13 20 20 Si 1.86801 * 119.99733 * 359.97438 * 18 16 13 21 21 H 1.48499 * 109.47066 * 90.00118 * 20 18 16 22 22 H 1.48504 * 109.46931 * 210.00107 * 20 18 16 23 23 H 1.48500 * 109.47179 * 329.99751 * 20 18 16 24 24 H 1.09001 * 109.47103 * 300.00345 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99849 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.95821 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.80187 * 180.26161 * 5 4 3 29 29 H 1.08995 * 109.47250 * 269.98016 * 7 6 5 30 30 H 1.09000 * 109.47306 * 29.98152 * 7 6 5 31 31 H 1.08999 * 109.46900 * 149.98159 * 7 6 5 32 32 H 1.08000 * 120.04230 * 180.02562 * 8 6 5 33 33 H 0.96994 * 119.99971 * 359.97438 * 12 10 9 34 34 H 1.09001 * 109.47116 * 59.99590 * 15 13 12 35 35 H 1.09002 * 109.47547 * 179.97438 * 15 13 12 36 36 H 1.09003 * 109.47553 * 300.00276 * 15 13 12 37 37 H 0.97000 * 120.00689 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3739 -0.0058 5 6 1.9208 3.6033 -0.0005 6 6 3.3039 3.6836 -0.0009 7 6 3.9769 5.0320 -0.0015 8 6 4.0669 2.5362 -0.0005 9 6 3.4441 1.2856 -0.0001 10 6 4.2551 0.0530 0.0009 11 8 3.7094 -1.0335 0.0017 12 7 5.6005 0.1316 0.0010 13 6 6.4057 -1.0924 0.0015 14 1 5.9021 -1.8583 0.5911 15 6 6.5810 -1.5881 -1.4353 16 6 7.7575 -0.8041 0.6020 17 1 7.9934 0.1914 0.9482 18 6 8.6931 -1.8111 0.7094 19 7 9.8726 -1.5597 1.2338 20 14 8.2847 -3.5330 0.1112 21 1 8.6707 -3.6655 -1.3166 22 1 9.0325 -4.5285 0.9206 23 1 6.8264 -3.7738 0.2542 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2140 2.3194 -0.0100 28 1 1.3305 4.5077 -0.0008 29 1 4.1392 5.3566 -1.0292 30 1 3.3429 5.7547 0.5121 31 1 4.9355 4.9597 0.5124 32 1 5.1448 2.6036 -0.0004 33 1 6.0357 0.9984 0.0000 34 1 7.0846 -0.8221 -2.0250 35 1 7.1805 -2.4985 -1.4350 36 1 5.6033 -1.7965 -1.8697 37 1 10.5310 -2.2681 1.3091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = -70.425017 kcal Electronic energy + Delta-G solvation = -19712.496016 eV Core-core repulsion = 16647.361435 eV Total energy + Delta-G solvation = -3065.134581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.57082 -40.00484 -38.58948 -36.79572 -34.45280 -33.17756 -32.60097 -31.08681 -28.64698 -27.24715 -26.80488 -25.24460 -23.21211 -21.92768 -21.19865 -19.59651 -18.75375 -17.71399 -17.62832 -16.93801 -16.73221 -16.09712 -15.71980 -15.56932 -15.21646 -14.91702 -14.66957 -14.56275 -14.38906 -14.14672 -13.63622 -13.26888 -13.09285 -12.96239 -12.84219 -12.77326 -12.47723 -12.16546 -12.04444 -11.74375 -11.61916 -11.29897 -10.88198 -10.70641 -10.12301 -9.83227 -9.03464 -8.39118 -6.44895 -0.10506 0.39262 1.26092 1.34354 1.44824 1.96971 2.25686 2.36437 2.44439 2.85158 2.97310 3.73128 3.80059 3.94853 4.14550 4.35313 4.37354 4.38731 4.42510 4.47619 4.56922 4.67930 4.68513 4.73521 4.93036 4.95326 4.98584 5.09291 5.25334 5.30046 5.32675 5.41237 5.59218 5.63145 5.81623 6.13664 6.46699 6.55391 6.86713 7.18420 7.44409 8.76078 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.005493 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.019016 B = 5096.116409 C = 6056.666740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.156 3.844 4 C -0.212 4.212 5 C -0.046 4.046 6 C -0.134 4.134 7 C -0.107 4.107 8 C -0.055 4.055 9 C -0.195 4.195 10 C 0.544 3.456 11 O -0.579 6.579 12 N -0.699 5.699 13 C 0.242 3.758 14 H 0.019 0.981 15 C -0.153 4.153 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.032 3.968 19 N -0.931 5.931 20 Si 0.938 3.062 21 H -0.257 1.257 22 H -0.289 1.289 23 H -0.267 1.267 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 13.359 -4.395 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.108 3.892 4 C -0.231 4.231 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.164 4.164 8 C -0.074 4.074 9 C -0.199 4.199 10 C 0.333 3.667 11 O -0.460 6.460 12 N -0.349 5.349 13 C 0.138 3.862 14 H 0.037 0.963 15 C -0.212 4.212 16 C -0.571 4.571 17 H 0.076 0.924 18 C -0.168 4.168 19 N -0.570 5.570 20 Si 0.765 3.235 21 H -0.183 1.183 22 H -0.216 1.216 23 H -0.192 1.192 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.181 0.819 28 H 0.186 0.814 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.845 12.304 -4.342 22.921 hybrid contribution 0.436 -0.811 -0.014 0.921 sum -18.409 11.493 -4.355 22.135 Atomic orbital electron populations 1.23421 0.76694 1.05263 1.02743 1.86359 1.23202 1.26703 1.87038 1.19354 0.90871 0.85841 0.93144 1.21522 1.01430 0.91004 1.09116 1.21453 0.93818 0.97974 0.93172 1.20105 0.94205 0.95874 1.03253 1.20789 1.00711 0.91572 1.03314 1.21275 1.00549 0.90144 0.95395 1.19468 0.91603 0.93673 1.15137 1.18642 0.82473 0.89311 0.76303 1.90715 1.72468 1.30662 1.52191 1.45935 1.05191 1.10459 1.73337 1.18769 0.89723 0.84361 0.93373 0.96268 1.22331 0.99701 1.00533 0.98588 1.21218 0.96994 0.97914 1.41004 0.92402 1.25516 0.94446 1.02290 0.94565 1.69961 1.06400 1.34991 1.45664 0.86023 0.78654 0.80055 0.78779 1.18273 1.21627 1.19185 0.90903 0.90749 0.87610 0.81918 0.81439 0.90188 0.89514 0.91492 0.84463 0.76003 0.91494 0.93839 0.93951 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.37 16 2 O -0.32 -10.72 8.57 -68.74 -0.59 -11.31 16 3 C 0.16 4.80 6.70 22.84 0.15 4.95 16 4 C -0.21 -4.37 9.03 22.34 0.20 -4.17 16 5 C -0.05 -0.79 9.68 22.30 0.22 -0.57 16 6 C -0.13 -2.70 5.87 -19.90 -0.12 -2.81 16 7 C -0.11 -1.46 10.00 71.24 0.71 -0.75 16 8 C -0.05 -1.49 9.18 22.52 0.21 -1.29 16 9 C -0.19 -6.78 5.89 -20.01 -0.12 -6.90 16 10 C 0.54 24.03 7.73 86.70 0.67 24.70 16 11 O -0.58 -29.95 14.82 16.93 0.25 -29.70 16 12 N -0.70 -30.85 5.02 -449.29 -2.26 -33.10 16 13 C 0.24 12.40 2.15 44.24 0.10 12.49 16 14 H 0.02 1.11 6.63 -2.39 -0.02 1.09 16 15 C -0.15 -7.15 8.96 71.98 0.65 -6.51 16 16 C -0.53 -30.25 9.31 25.60 0.24 -30.01 16 17 H 0.06 3.46 7.98 -2.91 -0.02 3.43 16 18 C 0.03 1.84 5.45 84.66 0.46 2.30 16 19 N -0.93 -56.70 13.96 21.45 0.30 -56.40 16 20 Si 0.94 46.18 24.38 68.60 1.67 47.85 16 21 H -0.26 -11.82 6.87 99.48 0.68 -11.14 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.27 -13.32 6.53 99.48 0.65 -12.67 16 24 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 25 H 0.07 1.09 7.65 -2.38 -0.02 1.07 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.16 2.22 6.30 -2.91 -0.02 2.20 16 28 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.14 3.48 6.40 -2.91 -0.02 3.46 16 33 H 0.40 15.58 6.57 -92.71 -0.61 14.97 16 34 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.04 2.04 3.28 -2.39 -0.01 2.03 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.42 304.59 4.26 -72.16 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.40 Total: 17.70 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 4.48 Total: -7.19 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -1.96 Total: -89.51 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.34 Total: -41.00 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.67 Total: 47.85 kcal Total: -76.42 4.26 -72.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.736 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds