Wall clock time and date at job start Mon Mar 30 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 116.99548 * 2 1 4 4 C 1.38706 * 120.15368 * 359.72474 * 3 2 1 5 5 C 1.38063 * 120.08133 * 179.72264 * 4 3 2 6 6 C 1.38545 * 120.39228 * 0.55381 * 5 4 3 7 7 C 1.50690 * 119.85035 * 179.74731 * 6 5 4 8 8 C 1.37793 * 120.29862 * 359.72344 * 6 5 4 9 9 C 1.39708 * 119.90890 * 359.97438 * 8 6 5 10 10 C 1.47535 * 120.18923 * 179.97438 * 9 8 6 11 11 O 1.21596 * 119.99655 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00538 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00582 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46763 * 35.00100 * 13 12 10 15 15 C 1.52995 * 109.47105 * 275.00202 * 13 12 10 16 16 C 1.50694 * 109.47179 * 154.99639 * 13 12 10 17 17 H 1.08001 * 120.00045 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00145 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99460 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00097 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47283 * 59.99972 * 20 18 16 22 22 H 1.48500 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46957 * 299.99814 * 20 18 16 24 24 H 1.09001 * 109.47103 * 60.00554 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00114 * 1 2 3 27 27 H 1.07995 * 119.95839 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.79998 * 180.25436 * 5 4 3 29 29 H 1.09003 * 109.46731 * 269.97572 * 7 6 5 30 30 H 1.09000 * 109.47593 * 29.97652 * 7 6 5 31 31 H 1.08998 * 109.47658 * 149.97823 * 7 6 5 32 32 H 1.07996 * 120.04738 * 180.02562 * 8 6 5 33 33 H 0.97004 * 119.99538 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47227 * 299.99614 * 15 13 12 35 35 H 1.08997 * 109.47407 * 59.99844 * 15 13 12 36 36 H 1.08998 * 109.47103 * 179.97438 * 15 13 12 37 37 H 0.97003 * 119.99996 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0058 5 6 1.9206 3.6034 0.0000 6 6 3.3037 3.6838 0.0001 7 6 3.9767 5.0321 0.0007 8 6 4.0668 2.5364 0.0000 9 6 3.4441 1.2857 0.0005 10 6 4.2551 0.0532 0.0000 11 8 3.7095 -1.0335 -0.0001 12 7 5.6005 0.1317 -0.0005 13 6 6.4058 -1.0921 -0.0005 14 1 5.9020 -1.8584 -0.5897 15 6 6.5815 -1.5869 1.4365 16 6 7.7573 -0.8041 -0.6016 17 1 7.9931 0.1911 -0.9485 18 6 8.6930 -1.8112 -0.7087 19 7 8.4060 -3.0229 -0.2858 20 14 10.3686 -1.4540 -1.4531 21 1 11.0550 -0.4105 -0.6497 22 1 11.1848 -2.6946 -1.4532 23 1 10.1983 -0.9728 -2.8476 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2138 2.3195 -0.0107 28 1 1.3303 4.5078 -0.0003 29 1 4.1393 5.3573 -1.0269 30 1 3.3425 5.7545 0.5144 31 1 4.9351 4.9597 0.5148 32 1 5.1446 2.6038 0.0005 33 1 6.0357 0.9987 -0.0009 34 1 7.0853 -0.8206 2.0256 35 1 5.6039 -1.7953 1.8712 36 1 7.1803 -2.4977 1.4364 37 1 9.0641 -3.7315 -0.3614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:27 Heat of formation + Delta-G solvation = -55.185715 kcal Electronic energy + Delta-G solvation = -19644.025275 eV Core-core repulsion = 16579.551520 eV Total energy + Delta-G solvation = -3064.473755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31710 -38.29764 -37.47930 -34.65806 -32.46047 -31.99289 -31.17620 -28.65235 -27.67409 -25.92136 -25.19688 -23.78860 -21.74764 -20.51767 -19.30899 -18.26313 -17.00690 -16.30299 -15.66760 -15.63746 -15.02183 -14.57828 -14.26615 -14.10018 -13.95667 -13.65427 -13.50897 -12.90580 -12.39345 -12.19021 -12.12473 -11.97948 -11.60362 -11.49566 -11.07345 -11.02402 -10.91076 -10.81312 -10.65300 -10.26589 -10.17375 -8.99874 -8.94809 -8.89912 -8.48629 -8.01805 -7.74387 -6.06725 -4.15798 1.06044 1.42707 3.29060 3.33992 3.35045 3.36621 3.39651 4.13640 4.25891 4.42557 4.72779 4.79636 4.96398 5.07091 5.15842 5.23515 5.25249 5.35697 5.50970 5.56817 5.60445 5.69244 5.86170 5.96046 6.19729 6.29258 6.54875 6.76326 6.90980 7.05795 7.23172 7.49586 7.55831 7.65698 7.77638 7.99789 8.21727 8.76105 8.86107 9.25224 9.51939 10.99301 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.005193 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.269054 B = 5390.318324 C = 6344.491449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.276 6.276 3 C 0.173 3.827 4 C -0.220 4.220 5 C -0.064 4.064 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.050 4.050 9 C -0.154 4.154 10 C 0.543 3.457 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.266 3.734 14 H 0.049 0.951 15 C -0.146 4.146 16 C -0.533 4.533 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.385 0.615 34 H 0.026 0.974 35 H 0.015 0.985 36 H 0.090 0.910 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 14.084 1.163 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.187 6.187 3 C 0.125 3.875 4 C -0.238 4.238 5 C -0.082 4.082 6 C -0.138 4.138 7 C -0.164 4.164 8 C -0.068 4.068 9 C -0.158 4.158 10 C 0.329 3.671 11 O -0.412 6.412 12 N -0.356 5.356 13 C 0.164 3.836 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.219 0.781 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.108 0.892 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.880 12.853 1.180 18.234 hybrid contribution 0.832 0.752 -0.377 1.184 sum -12.048 13.605 0.803 18.190 Atomic orbital electron populations 1.23116 0.79422 1.04066 1.00732 1.86445 1.20120 1.25394 1.86745 1.19088 0.91171 0.84727 0.92514 1.21164 0.99972 0.92085 1.10627 1.20886 0.93911 0.96866 0.96577 1.19702 0.93553 0.95479 1.05037 1.20702 1.00445 0.93058 1.02188 1.21143 0.99994 0.90325 0.95378 1.19778 0.91032 0.94927 1.10079 1.17954 0.82941 0.87994 0.78252 1.90771 1.71798 1.28513 1.50074 1.46448 1.04996 1.11505 1.72626 1.18726 0.89162 0.81750 0.93960 0.93312 1.22071 0.98497 1.02530 0.97408 1.21184 0.98054 0.96501 1.41400 0.92180 1.24884 0.98743 0.94863 0.95209 1.69898 1.35201 1.01147 1.45855 0.86510 0.83298 0.77615 0.79660 1.20186 1.21155 1.20201 0.92917 0.88167 0.92937 0.85171 0.85787 0.91423 0.91856 0.91437 0.84797 0.78143 0.95528 0.96601 0.89188 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.28 -4.83 8.57 -40.53 -0.35 -5.17 16 3 C 0.17 2.86 6.70 -38.69 -0.26 2.60 16 4 C -0.22 -2.75 9.03 -39.47 -0.36 -3.10 16 5 C -0.06 -0.72 9.68 -39.53 -0.38 -1.10 16 6 C -0.14 -1.64 5.87 -104.68 -0.61 -2.26 16 7 C -0.11 -0.95 10.00 36.00 0.36 -0.59 16 8 C -0.05 -0.72 9.18 -39.20 -0.36 -1.08 16 9 C -0.15 -2.78 5.89 -104.84 -0.62 -3.40 16 10 C 0.54 12.21 7.73 -12.47 -0.10 12.11 16 11 O -0.53 -14.01 14.82 -16.60 -0.25 -14.26 16 12 N -0.71 -15.83 5.02 -55.98 -0.28 -16.11 16 13 C 0.27 7.06 2.56 -69.09 -0.18 6.89 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 16 C -0.53 -14.47 8.73 -34.44 -0.30 -14.77 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.88 -25.37 11.32 55.43 0.63 -24.75 16 20 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 27 H 0.13 1.26 6.30 -52.49 -0.33 0.92 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.13 1.75 6.40 -52.49 -0.34 1.42 16 33 H 0.39 7.42 6.57 -40.82 -0.27 7.16 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 311.41 15.07 4.69 4.69 Total: -1.00 -33.25 311.41 -7.07 -40.32 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.93 Total: 4.57 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.56 Total: -5.20 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.35 Total: -40.86 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.59 Total: -19.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.25 -7.07 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.861 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds