Wall clock time and date at job start Mon Mar 30 2020 07:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 116.99548 * 2 1 4 4 C 1.38706 * 120.15368 * 359.72474 * 3 2 1 5 5 C 1.38063 * 120.08133 * 179.72264 * 4 3 2 6 6 C 1.38545 * 120.39228 * 0.55381 * 5 4 3 7 7 C 1.50690 * 119.85035 * 179.74731 * 6 5 4 8 8 C 1.37793 * 120.29862 * 359.72344 * 6 5 4 9 9 C 1.39708 * 119.90890 * 359.97438 * 8 6 5 10 10 C 1.47535 * 120.18923 * 179.97438 * 9 8 6 11 11 O 1.21596 * 119.99655 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00538 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00582 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46763 * 35.00100 * 13 12 10 15 15 C 1.52995 * 109.47105 * 275.00202 * 13 12 10 16 16 C 1.50694 * 109.47179 * 154.99639 * 13 12 10 17 17 H 1.08001 * 120.00045 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00145 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99460 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00097 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47283 * 59.99972 * 20 18 16 22 22 H 1.48500 * 109.47098 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46957 * 299.99814 * 20 18 16 24 24 H 1.09001 * 109.47103 * 60.00554 * 1 2 3 25 25 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 300.00114 * 1 2 3 27 27 H 1.07995 * 119.95839 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.79998 * 180.25436 * 5 4 3 29 29 H 1.09003 * 109.46731 * 269.97572 * 7 6 5 30 30 H 1.09000 * 109.47593 * 29.97652 * 7 6 5 31 31 H 1.08998 * 109.47658 * 149.97823 * 7 6 5 32 32 H 1.07996 * 120.04738 * 180.02562 * 8 6 5 33 33 H 0.97004 * 119.99538 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47227 * 299.99614 * 15 13 12 35 35 H 1.08997 * 109.47407 * 59.99844 * 15 13 12 36 36 H 1.08998 * 109.47103 * 179.97438 * 15 13 12 37 37 H 0.97003 * 119.99996 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0058 5 6 1.9206 3.6034 0.0000 6 6 3.3037 3.6838 0.0001 7 6 3.9767 5.0321 0.0007 8 6 4.0668 2.5364 0.0000 9 6 3.4441 1.2857 0.0005 10 6 4.2551 0.0532 0.0000 11 8 3.7095 -1.0335 -0.0001 12 7 5.6005 0.1317 -0.0005 13 6 6.4058 -1.0921 -0.0005 14 1 5.9020 -1.8584 -0.5897 15 6 6.5815 -1.5869 1.4365 16 6 7.7573 -0.8041 -0.6016 17 1 7.9931 0.1911 -0.9485 18 6 8.6930 -1.8112 -0.7087 19 7 8.4060 -3.0229 -0.2858 20 14 10.3686 -1.4540 -1.4531 21 1 11.0550 -0.4105 -0.6497 22 1 11.1848 -2.6946 -1.4532 23 1 10.1983 -0.9728 -2.8476 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2138 2.3195 -0.0107 28 1 1.3303 4.5078 -0.0003 29 1 4.1393 5.3573 -1.0269 30 1 3.3425 5.7545 0.5144 31 1 4.9351 4.9597 0.5148 32 1 5.1446 2.6038 0.0005 33 1 6.0357 0.9987 -0.0009 34 1 7.0853 -0.8206 2.0256 35 1 5.6039 -1.7953 1.8712 36 1 7.1803 -2.4977 1.4364 37 1 9.0641 -3.7315 -0.3614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:26 Heat of formation + Delta-G solvation = -76.846607 kcal Electronic energy + Delta-G solvation = -19644.964562 eV Core-core repulsion = 16579.551520 eV Total energy + Delta-G solvation = -3065.413042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53500 -39.91980 -38.57679 -36.66921 -34.38473 -33.06155 -32.42243 -30.48978 -28.62834 -27.35531 -26.79425 -25.16491 -23.17474 -21.93970 -21.10307 -19.56126 -18.56380 -17.62582 -17.35938 -16.83931 -16.73485 -16.02411 -15.68857 -15.46845 -15.23090 -14.65001 -14.61478 -14.42854 -14.31061 -13.70318 -13.08665 -13.08225 -12.97542 -12.83008 -12.80833 -12.70953 -12.46784 -12.27781 -12.14832 -12.02715 -11.73843 -11.13057 -10.70150 -10.56145 -10.09210 -9.71895 -9.02104 -8.17102 -6.35502 -0.08304 0.40106 1.44977 1.48160 1.55953 2.02048 2.34620 2.40379 2.62452 2.88172 3.12976 3.76991 3.81883 3.96958 4.15389 4.36588 4.38039 4.39599 4.50171 4.67308 4.71064 4.76036 4.90369 4.96047 4.96896 5.07629 5.10326 5.26466 5.31603 5.42598 5.59429 5.60559 5.67352 5.83351 5.90985 6.08298 6.48536 6.71211 6.97772 7.31769 7.56138 8.89523 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.005193 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.269054 B = 5390.318324 C = 6344.491449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.152 3.848 4 C -0.212 4.212 5 C -0.047 4.047 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.054 4.054 9 C -0.195 4.195 10 C 0.538 3.462 11 O -0.585 6.585 12 N -0.703 5.703 13 C 0.271 3.729 14 H -0.005 1.005 15 C -0.132 4.132 16 C -0.548 4.548 17 H 0.074 0.926 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.401 0.599 34 H 0.041 0.959 35 H 0.007 0.993 36 H 0.069 0.931 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 17.949 0.914 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.105 3.895 4 C -0.231 4.231 5 C -0.065 4.065 6 C -0.134 4.134 7 C -0.163 4.163 8 C -0.073 4.073 9 C -0.199 4.199 10 C 0.326 3.674 11 O -0.467 6.467 12 N -0.353 5.353 13 C 0.168 3.832 14 H 0.013 0.987 15 C -0.190 4.190 16 C -0.586 4.586 17 H 0.092 0.908 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.180 0.820 28 H 0.186 0.814 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.237 0.763 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.088 0.912 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.325 16.773 0.936 21.442 hybrid contribution 0.824 -0.394 -0.296 0.961 sum -12.501 16.379 0.640 20.614 Atomic orbital electron populations 1.23416 0.76736 1.05204 1.02751 1.86376 1.23205 1.26861 1.87073 1.19405 0.90978 0.85832 0.93318 1.21519 1.01387 0.91005 1.09160 1.21457 0.93900 0.97870 0.93304 1.20117 0.94155 0.95913 1.03194 1.20783 1.00783 0.91407 1.03289 1.21271 1.00609 0.89972 0.95455 1.19544 0.91637 0.93808 1.14865 1.18732 0.82843 0.89239 0.76538 1.90719 1.72618 1.30994 1.52393 1.46186 1.05220 1.10901 1.72953 1.18352 0.89293 0.82262 0.93276 0.98715 1.21886 0.97718 1.01982 0.97454 1.21492 0.98127 0.97310 1.41719 0.90803 1.25859 1.02946 0.94455 0.95402 1.70060 1.36607 1.02208 1.46785 0.85325 0.77980 0.77663 0.78916 1.18623 1.21062 1.19561 0.90803 0.87748 0.90749 0.81973 0.81363 0.90310 0.89472 0.91228 0.84261 0.76276 0.93979 0.97371 0.91246 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.40 16 2 O -0.32 -11.64 8.57 -68.75 -0.59 -12.23 16 3 C 0.15 5.02 6.70 22.84 0.15 5.17 16 4 C -0.21 -4.66 9.03 22.34 0.20 -4.46 16 5 C -0.05 -0.84 9.68 22.30 0.22 -0.63 16 6 C -0.13 -2.74 5.87 -19.90 -0.12 -2.86 16 7 C -0.11 -1.41 10.00 71.23 0.71 -0.70 16 8 C -0.05 -1.52 9.18 22.52 0.21 -1.31 16 9 C -0.19 -7.17 5.89 -20.01 -0.12 -7.29 16 10 C 0.54 25.61 7.73 86.70 0.67 26.28 16 11 O -0.59 -33.17 14.82 16.90 0.25 -32.92 16 12 N -0.70 -32.90 5.02 -449.29 -2.25 -35.16 16 13 C 0.27 15.19 2.56 44.24 0.11 15.30 16 14 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 15 C -0.13 -7.16 9.26 71.98 0.67 -6.49 16 16 C -0.55 -30.34 8.73 25.60 0.22 -30.11 16 17 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 18 C 0.01 0.74 5.30 84.66 0.45 1.19 16 19 N -0.92 -54.39 11.32 21.45 0.24 -54.14 16 20 Si 0.98 42.87 29.54 68.60 2.03 44.90 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H 0.07 1.23 7.65 -2.39 -0.02 1.22 16 25 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 27 H 0.16 2.43 6.30 -2.91 -0.02 2.41 16 28 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.07 0.92 8.08 -2.39 -0.02 0.91 16 32 H 0.14 3.54 6.40 -2.91 -0.02 3.52 16 33 H 0.40 15.81 6.57 -92.71 -0.61 15.21 16 34 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 37 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -77.62 311.41 4.64 -72.98 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.47 Total: 21.09 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.49 Total: -4.51 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -2.01 Total: -89.30 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.34 Total: -45.15 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -77.62 4.64 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.866 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds