Wall clock time and date at job start Mon Mar 30 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47076 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47208 * 60.00117 * 19 17 15 21 21 H 1.48500 * 109.46863 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47124 * 299.99655 * 19 17 15 23 23 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 27 27 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 28 28 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 29 29 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 30 30 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 31 31 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 32 32 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 34 34 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 35 35 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 36 36 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 37 37 H 0.97004 * 120.00340 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 6 8.7193 -1.9845 -0.0025 16 1 8.2347 -2.9496 -0.0041 17 6 10.0957 -1.9042 -0.0017 18 7 10.6858 -0.7288 -0.0003 19 14 11.1224 -3.4647 -0.0039 20 1 10.8103 -4.2608 -1.2181 21 1 12.5641 -3.1087 -0.0032 22 1 10.8091 -4.2651 1.2070 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2138 2.3195 0.0005 27 1 1.3304 4.5077 -0.0093 28 1 4.1391 5.3574 -1.0261 29 1 3.3428 5.7544 0.5156 30 1 4.9354 4.9594 0.5152 31 1 5.1447 2.6036 0.0008 32 1 6.0357 0.9985 -0.0003 33 1 6.1761 -1.6786 0.8877 34 1 6.1760 -1.6778 -0.8922 35 1 8.1208 -0.1389 -0.8907 36 1 8.1204 -0.1402 0.8892 37 1 11.6542 -0.6723 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:19 Heat of formation + Delta-G solvation = -62.376645 kcal Electronic energy + Delta-G solvation = -19068.354090 eV Core-core repulsion = 16003.568513 eV Total energy + Delta-G solvation = -3064.785577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52860 -38.59803 -37.66335 -34.74559 -32.86300 -32.18803 -31.47025 -29.36658 -27.88690 -26.06796 -25.06768 -23.52317 -21.69319 -20.74157 -19.93219 -18.31555 -16.84553 -16.44780 -16.20517 -15.84820 -14.86490 -14.69054 -14.68656 -14.46017 -14.35655 -13.83112 -13.79458 -13.03771 -12.98501 -12.38658 -12.24701 -12.18916 -12.12023 -11.67797 -11.25456 -11.13633 -10.99098 -10.95503 -10.62475 -10.26842 -9.72543 -9.39909 -9.14982 -9.13180 -8.47927 -8.30710 -8.09928 -6.06094 -4.08656 0.86009 1.26795 3.10861 3.21794 3.33857 3.37287 3.40589 3.74204 3.94895 4.44614 4.57861 4.63801 4.79685 4.90679 5.02352 5.10370 5.19329 5.30896 5.36082 5.43779 5.44463 5.49863 5.74069 5.80326 6.02833 6.09788 6.39471 6.42126 6.44220 6.59626 6.80359 7.01235 7.32557 7.56381 7.66328 7.92513 8.11439 8.32631 8.78243 8.97242 9.55888 11.05556 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.003984 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.852035 B = 7027.282799 C = 8064.082685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.278 6.278 3 C 0.176 3.824 4 C -0.219 4.219 5 C -0.059 4.059 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.048 4.048 9 C -0.160 4.160 10 C 0.549 3.451 11 O -0.530 6.530 12 N -0.721 5.721 13 C 0.123 3.877 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.394 0.606 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.814 11.821 -0.010 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.127 3.873 4 C -0.238 4.238 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.166 4.166 8 C -0.067 4.067 9 C -0.164 4.164 10 C 0.335 3.665 11 O -0.407 6.407 12 N -0.372 5.372 13 C 0.001 3.999 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.229 0.771 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.922 10.878 -0.010 21.826 hybrid contribution 0.582 -0.176 -0.007 0.608 sum -18.340 10.702 -0.017 21.235 Atomic orbital electron populations 1.23134 0.79152 1.04174 1.00901 1.86414 1.20370 1.25411 1.86729 1.19063 0.91058 0.84812 0.92333 1.21185 1.00102 0.92026 1.10453 1.20940 0.93943 0.96980 0.95896 1.19734 0.93550 0.95580 1.04675 1.20727 1.00574 0.92921 1.02358 1.21151 1.00047 0.90311 0.95168 1.19559 0.90933 0.94470 1.11415 1.17987 0.82481 0.88333 0.77666 1.90788 1.71782 1.28633 1.49523 1.46242 1.05524 1.11194 1.74224 1.21714 0.92655 0.84683 1.00832 1.19324 0.87507 0.97847 0.97816 1.21024 0.91111 0.92534 1.51315 0.92282 1.24987 0.97987 0.96260 0.95007 1.69946 1.09787 1.23228 1.50429 0.86573 0.78910 0.83274 0.78782 1.20119 1.21262 1.20112 0.88086 0.92791 0.92801 0.84997 0.85571 0.91276 0.91719 0.91259 0.84686 0.77124 0.92530 0.92523 0.95941 0.95937 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.28 -4.29 8.57 -40.53 -0.35 -4.64 16 3 C 0.18 2.56 6.70 -38.69 -0.26 2.30 16 4 C -0.22 -2.39 9.03 -39.48 -0.36 -2.75 16 5 C -0.06 -0.58 9.68 -39.53 -0.38 -0.96 16 6 C -0.14 -1.43 5.87 -104.67 -0.61 -2.05 16 7 C -0.11 -0.86 10.00 36.01 0.36 -0.50 16 8 C -0.05 -0.61 9.18 -39.20 -0.36 -0.97 16 9 C -0.16 -2.53 5.89 -104.85 -0.62 -3.14 16 10 C 0.55 10.67 7.76 -12.47 -0.10 10.57 16 11 O -0.53 -12.13 15.16 -16.60 -0.25 -12.38 16 12 N -0.72 -13.68 5.51 -61.35 -0.34 -14.02 16 13 C 0.12 2.75 5.61 -4.04 -0.02 2.73 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 27 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.14 1.52 6.40 -52.49 -0.34 1.19 16 32 H 0.39 6.44 6.50 -40.82 -0.27 6.18 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -33.92 316.23 -7.43 -41.36 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.07 Total: 0.77 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.91 Total: -6.83 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.40 Total: -39.63 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.60 Total: -17.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.92 -7.43 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.020 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds