Wall clock time and date at job start Mon Mar 30 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47076 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47208 * 60.00117 * 19 17 15 21 21 H 1.48500 * 109.46863 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47124 * 299.99655 * 19 17 15 23 23 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 27 27 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 28 28 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 29 29 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 30 30 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 31 31 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 32 32 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 33 33 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 34 34 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 35 35 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 36 36 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 37 37 H 0.97004 * 120.00340 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 6 8.7193 -1.9845 -0.0025 16 1 8.2347 -2.9496 -0.0041 17 6 10.0957 -1.9042 -0.0017 18 7 10.6858 -0.7288 -0.0003 19 14 11.1224 -3.4647 -0.0039 20 1 10.8103 -4.2608 -1.2181 21 1 12.5641 -3.1087 -0.0032 22 1 10.8091 -4.2651 1.2070 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.2138 2.3195 0.0005 27 1 1.3304 4.5077 -0.0093 28 1 4.1391 5.3574 -1.0261 29 1 3.3428 5.7544 0.5156 30 1 4.9354 4.9594 0.5152 31 1 5.1447 2.6036 0.0008 32 1 6.0357 0.9985 -0.0003 33 1 6.1761 -1.6786 0.8877 34 1 6.1760 -1.6778 -0.8922 35 1 8.1208 -0.1389 -0.8907 36 1 8.1204 -0.1402 0.8892 37 1 11.6542 -0.6723 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:18 Heat of formation + Delta-G solvation = -84.057278 kcal Electronic energy + Delta-G solvation = -19069.294233 eV Core-core repulsion = 16003.568513 eV Total energy + Delta-G solvation = -3065.725720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60407 -39.99464 -38.61007 -36.57393 -34.84469 -33.16203 -32.55238 -31.13199 -28.68915 -27.01170 -26.75180 -24.82474 -23.13604 -22.18607 -21.29272 -19.35295 -18.58089 -17.89464 -17.45964 -16.84057 -16.48254 -16.29637 -16.27453 -15.70014 -15.24834 -14.87994 -14.68253 -14.49291 -14.36210 -14.26189 -13.25225 -13.09145 -13.06992 -12.90058 -12.84492 -12.55976 -12.48147 -12.24171 -12.08196 -11.76059 -11.67194 -11.47510 -10.80491 -10.60272 -10.19596 -9.93672 -9.06053 -8.24099 -6.34896 -0.14792 0.36985 1.41608 1.44341 1.52303 1.88848 2.22270 2.36667 2.45551 2.81200 3.10343 3.67474 3.76835 3.92068 4.12522 4.33567 4.36171 4.38303 4.42545 4.46717 4.51659 4.67228 4.72841 4.82505 4.93536 4.94572 5.06631 5.23701 5.27319 5.29546 5.48181 5.56208 5.57304 5.77507 5.78979 6.15456 6.42115 6.63567 6.77355 7.27424 7.34214 8.87711 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.003984 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.852035 B = 7027.282799 C = 8064.082685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.157 3.843 4 C -0.212 4.212 5 C -0.045 4.045 6 C -0.134 4.134 7 C -0.108 4.108 8 C -0.055 4.055 9 C -0.196 4.196 10 C 0.547 3.453 11 O -0.574 6.574 12 N -0.716 5.716 13 C 0.142 3.858 14 C 0.024 3.976 15 C -0.550 4.550 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 H 0.106 0.894 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.407 0.593 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 13.594 -0.007 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.109 3.891 4 C -0.231 4.231 5 C -0.063 4.063 6 C -0.135 4.135 7 C -0.165 4.165 8 C -0.073 4.073 9 C -0.200 4.200 10 C 0.336 3.664 11 O -0.455 6.455 12 N -0.368 5.368 13 C 0.019 3.981 14 C -0.013 4.013 15 C -0.588 4.588 16 H 0.076 0.924 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 H 0.125 0.875 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.181 0.819 27 H 0.185 0.815 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.244 0.756 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.184 12.686 -0.007 23.839 hybrid contribution 0.872 -0.621 -0.008 1.070 sum -19.312 12.065 -0.016 22.771 Atomic orbital electron populations 1.23429 0.76618 1.05333 1.02765 1.86350 1.23259 1.26635 1.86987 1.19364 0.90904 0.85861 0.93012 1.21530 1.01483 0.91012 1.09049 1.21464 0.93850 0.98007 0.92969 1.20110 0.94205 0.95922 1.03217 1.20797 1.00780 0.91620 1.03292 1.21279 1.00601 0.90102 0.95351 1.19399 0.91516 0.93539 1.15528 1.18629 0.82274 0.89368 0.76151 1.90742 1.72454 1.30644 1.51644 1.46050 1.05668 1.10646 1.74444 1.21236 0.91382 0.85821 0.99697 1.19125 0.89055 0.96719 0.96407 1.21426 0.92117 0.93369 1.51893 0.92395 1.25865 0.99142 0.99726 0.94272 1.70050 1.10319 1.25319 1.50806 0.85488 0.77274 0.79109 0.79113 1.19377 1.20366 1.19364 0.87529 0.90815 0.90827 0.81911 0.81498 0.90314 0.89524 0.91346 0.84266 0.75642 0.93683 0.93674 0.97217 0.97210 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -10.01 8.57 -68.75 -0.59 -10.60 16 3 C 0.16 4.50 6.70 22.85 0.15 4.65 16 4 C -0.21 -4.02 9.03 22.34 0.20 -3.82 16 5 C -0.04 -0.70 9.68 22.30 0.22 -0.48 16 6 C -0.13 -2.48 5.87 -19.90 -0.12 -2.60 16 7 C -0.11 -1.34 10.00 71.24 0.71 -0.63 16 8 C -0.05 -1.36 9.18 22.52 0.21 -1.15 16 9 C -0.20 -6.30 5.89 -20.01 -0.12 -6.42 16 10 C 0.55 22.27 7.76 86.69 0.67 22.94 16 11 O -0.57 -27.77 15.16 16.90 0.26 -27.52 16 12 N -0.72 -28.46 5.51 -466.26 -2.57 -31.03 16 13 C 0.14 6.65 5.61 86.38 0.48 7.14 16 14 C 0.02 1.28 5.09 29.85 0.15 1.44 16 15 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.01 0.51 5.46 84.65 0.46 0.97 16 18 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 19 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 25 H 0.07 0.98 7.66 -2.38 -0.02 0.97 16 26 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 27 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.72 8.09 -2.39 -0.02 0.70 16 30 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.14 3.15 6.40 -2.91 -0.02 3.13 16 32 H 0.41 13.86 6.50 -92.71 -0.60 13.26 16 33 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.62 316.23 4.26 -71.36 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.47 Total: 14.14 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.37 Total: -8.07 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.28 Total: -85.71 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.33 Total: -38.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.62 4.26 -71.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.694 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds