Wall clock time and date at job start Mon Mar 30 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38132 * 120.03243 * 2 1 4 4 C 1.38266 * 120.07377 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.14759 * 0.02562 * 4 3 2 6 6 C 1.38081 * 120.07690 * 359.74266 * 5 4 3 7 7 C 1.38889 * 120.04353 * 179.97438 * 2 1 3 8 8 N 1.39679 * 120.07067 * 0.02562 * 7 2 1 9 9 C 1.46893 * 110.99828 * 116.04882 * 8 7 2 10 10 C 1.50706 * 109.47176 * 293.94826 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46899 * 110.99766 * 240.00164 * 8 7 2 19 19 C 1.52996 * 109.47585 * 66.04434 * 18 8 7 20 20 C 1.50698 * 109.47626 * 179.97438 * 19 18 8 21 21 O 1.20830 * 119.99917 * 0.02562 * 20 19 18 22 22 O 1.34233 * 120.00401 * 179.97438 * 20 19 18 23 23 H 1.08992 * 109.47195 * 270.01967 * 1 2 3 24 24 H 1.09000 * 109.47361 * 30.02474 * 1 2 3 25 25 H 1.09006 * 109.46794 * 150.02464 * 1 2 3 26 26 H 1.07997 * 119.96681 * 359.97430 * 3 2 1 27 27 H 1.07995 * 119.92439 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.96142 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.04006 * 180.27873 * 6 5 4 30 30 H 1.09001 * 109.46739 * 173.95235 * 9 8 7 31 31 H 1.09000 * 109.47767 * 53.95494 * 9 8 7 32 32 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.47358 * 186.05151 * 18 8 7 34 34 H 1.09003 * 109.47119 * 306.04495 * 18 8 7 35 35 H 1.09007 * 109.47364 * 300.00577 * 19 18 8 36 36 H 1.09003 * 109.46841 * 59.99892 * 19 18 8 37 37 H 0.96696 * 116.99801 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5810 1.1969 0.0005 5 6 4.2765 0.0014 0.0005 6 6 3.5916 -1.1977 0.0054 7 6 2.2024 -1.2023 0.0005 8 7 1.5064 -2.4133 0.0005 9 6 1.7667 -3.1701 -1.2313 10 6 1.1915 -2.4261 -2.4089 11 1 0.6838 -1.4850 -2.2574 12 6 1.3135 -2.9468 -3.6797 13 7 0.8120 -2.2974 -4.7074 14 14 2.1924 -4.5742 -3.9418 15 1 1.2129 -5.6864 -3.8486 16 1 2.8261 -4.5839 -5.2848 17 1 3.2369 -4.7460 -2.9004 18 6 1.8381 -3.2111 1.1886 19 6 1.3266 -2.4973 2.4414 20 6 1.6664 -3.3161 3.6601 21 8 2.2576 -4.3629 3.5391 22 8 1.3133 -2.8819 4.8803 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 1.6583 2.1311 -0.0004 27 1 4.1191 2.1332 0.0001 28 1 5.3564 0.0056 0.0005 29 1 4.1353 -2.1308 0.0099 30 1 1.3004 -4.1527 -1.1594 31 1 2.8421 -3.2872 -1.3655 32 1 0.8982 -2.6636 -5.6015 33 1 1.3676 -4.1912 1.1111 34 1 2.9194 -3.3316 1.2550 35 1 1.7973 -1.5171 2.5189 36 1 0.2453 -2.3769 2.3750 37 1 1.5534 -3.4412 5.6317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061895226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:36 Heat of formation + Delta-G solvation = -61.694267 kcal Electronic energy + Delta-G solvation = -20108.868779 eV Core-core repulsion = 17044.112792 eV Total energy + Delta-G solvation = -3064.755987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32855 -39.43109 -36.46806 -35.95850 -32.74933 -32.15095 -31.35069 -29.34857 -27.29769 -26.02743 -23.93735 -22.62474 -21.02343 -20.71990 -19.69339 -18.12053 -16.84347 -16.58115 -16.42594 -15.92987 -15.01358 -14.85579 -14.29381 -13.96329 -13.89067 -13.23335 -13.02428 -12.73095 -12.66549 -12.39771 -12.20109 -11.82728 -11.59618 -11.49541 -11.33968 -11.09980 -10.79310 -10.76319 -10.60934 -10.46706 -10.43603 -9.93278 -9.32683 -8.58833 -8.25648 -7.90233 -7.67556 -6.05983 -4.03408 1.88078 1.92653 2.21322 3.00475 3.27445 3.35165 3.36990 4.26082 4.40562 4.60667 4.95213 5.17222 5.26264 5.38232 5.40582 5.43701 5.51662 5.71072 5.81693 5.91941 6.05986 6.13402 6.17960 6.24976 6.34303 6.45690 6.47177 6.66264 6.79427 6.89942 6.98474 7.02592 7.25654 7.38398 7.50546 7.72797 7.87464 8.18312 8.58701 9.04343 9.54880 11.06836 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.007569 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.913913 B = 3698.307243 C = 4699.208696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.057 4.057 3 C -0.121 4.121 4 C -0.133 4.133 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.130 3.870 8 N -0.496 5.496 9 C 0.167 3.833 10 C -0.508 4.508 11 H 0.087 0.913 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.869 3.131 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.068 3.932 19 C -0.109 4.109 20 C 0.482 3.518 21 O -0.519 6.519 22 O -0.519 6.519 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.030 0.970 31 H -0.005 1.005 32 H 0.263 0.737 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 3.309 15.181 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.151 4.151 5 C -0.141 4.141 6 C -0.168 4.168 7 C 0.036 3.964 8 N -0.217 5.217 9 C 0.043 3.957 10 C -0.546 4.546 11 H 0.105 0.895 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.697 3.303 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.060 4.060 19 C -0.147 4.147 20 C 0.324 3.676 21 O -0.407 6.407 22 O -0.331 6.331 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.048 0.952 31 H 0.013 0.987 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.898 3.327 14.600 15.094 hybrid contribution 1.629 -1.467 0.023 2.192 sum 3.527 1.860 14.623 15.157 Atomic orbital electron populations 1.20704 0.90913 1.03713 1.01006 1.19779 0.96466 0.91351 0.98190 1.20908 0.94062 0.97212 1.01750 1.20945 0.94334 0.97422 1.02431 1.20838 0.99063 0.92495 1.01665 1.21566 0.95176 0.98016 1.02061 1.18528 0.89672 0.91185 0.97060 1.59644 1.56283 1.03006 1.02756 1.20304 0.95046 0.93767 0.86613 1.21011 1.36202 1.08565 0.88866 0.89526 1.24838 0.95227 0.96968 0.95982 1.69880 1.45811 1.38848 0.99063 0.86954 0.80614 0.84986 0.77793 1.20094 1.21175 1.19292 1.21904 0.99043 0.96758 0.88247 1.21356 1.05329 0.99486 0.88569 1.23674 0.74740 0.84608 0.84537 1.90720 1.38700 1.24360 1.86898 1.84566 1.76108 1.55006 1.17428 0.92510 0.92854 0.88882 0.86549 0.86926 0.87064 0.86986 0.95206 0.98694 0.92669 0.89792 0.94164 0.87778 0.86683 0.73582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 9.56 36.01 0.34 -1.42 16 2 C -0.06 -1.02 5.63 -104.42 -0.59 -1.61 16 3 C -0.12 -1.93 9.70 -39.61 -0.38 -2.32 16 4 C -0.13 -2.04 10.04 -39.54 -0.40 -2.43 16 5 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 6 C -0.15 -2.71 8.43 -39.38 -0.33 -3.04 16 7 C 0.13 2.47 2.79 -83.79 -0.23 2.24 16 8 N -0.50 -9.75 3.45 -172.48 -0.59 -10.34 16 9 C 0.17 3.92 3.68 -4.98 -0.02 3.90 16 10 C -0.51 -14.00 9.28 -34.44 -0.32 -14.32 16 11 H 0.09 2.57 6.42 -52.49 -0.34 2.23 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 14 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.07 1.13 4.11 -3.83 -0.02 1.11 16 19 C -0.11 -1.47 5.79 -27.89 -0.16 -1.63 16 20 C 0.48 6.27 8.33 36.00 0.30 6.57 16 21 O -0.52 -8.31 16.74 -18.75 -0.31 -8.62 16 22 O -0.52 -5.18 13.42 -39.27 -0.53 -5.70 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.09 1.81 6.48 -51.93 -0.34 1.48 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.11 2.03 7.00 -52.49 -0.37 1.66 16 30 H 0.03 0.70 7.36 -51.93 -0.38 0.32 16 31 H 0.00 -0.11 6.24 -51.93 -0.32 -0.44 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 33 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 34 H 0.04 0.69 6.88 -51.93 -0.36 0.33 16 35 H 0.10 1.38 7.40 -51.92 -0.38 0.99 16 36 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.41 2.26 9.10 45.56 0.41 2.67 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -32.38 310.24 -7.14 -39.52 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.18 Total: 3.54 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.30 Total: -13.37 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.18 Total: -36.72 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.84 Total: -14.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.38 -7.14 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.178 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds