Wall clock time and date at job start Mon Mar 30 2020 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38132 * 120.03243 * 2 1 4 4 C 1.38266 * 120.07377 * 179.97438 * 3 2 1 5 5 C 1.38310 * 120.14759 * 0.02562 * 4 3 2 6 6 C 1.38081 * 120.07690 * 359.74266 * 5 4 3 7 7 C 1.38889 * 120.04353 * 179.97438 * 2 1 3 8 8 N 1.39679 * 120.07067 * 0.02562 * 7 2 1 9 9 C 1.46893 * 110.99828 * 116.04882 * 8 7 2 10 10 C 1.50706 * 109.47176 * 293.94826 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46899 * 110.99766 * 240.00164 * 8 7 2 19 19 C 1.52996 * 109.47585 * 66.04434 * 18 8 7 20 20 C 1.50698 * 109.47626 * 179.97438 * 19 18 8 21 21 O 1.20830 * 119.99917 * 0.02562 * 20 19 18 22 22 O 1.34233 * 120.00401 * 179.97438 * 20 19 18 23 23 H 1.08992 * 109.47195 * 270.01967 * 1 2 3 24 24 H 1.09000 * 109.47361 * 30.02474 * 1 2 3 25 25 H 1.09006 * 109.46794 * 150.02464 * 1 2 3 26 26 H 1.07997 * 119.96681 * 359.97430 * 3 2 1 27 27 H 1.07995 * 119.92439 * 179.97438 * 4 3 2 28 28 H 1.07997 * 119.96142 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.04006 * 180.27873 * 6 5 4 30 30 H 1.09001 * 109.46739 * 173.95235 * 9 8 7 31 31 H 1.09000 * 109.47767 * 53.95494 * 9 8 7 32 32 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.47358 * 186.05151 * 18 8 7 34 34 H 1.09003 * 109.47119 * 306.04495 * 18 8 7 35 35 H 1.09007 * 109.47364 * 300.00577 * 19 18 8 36 36 H 1.09003 * 109.46841 * 59.99892 * 19 18 8 37 37 H 0.96696 * 116.99801 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5810 1.1969 0.0005 5 6 4.2765 0.0014 0.0005 6 6 3.5916 -1.1977 0.0054 7 6 2.2024 -1.2023 0.0005 8 7 1.5064 -2.4133 0.0005 9 6 1.7667 -3.1701 -1.2313 10 6 1.1915 -2.4261 -2.4089 11 1 0.6838 -1.4850 -2.2574 12 6 1.3135 -2.9468 -3.6797 13 7 0.8120 -2.2974 -4.7074 14 14 2.1924 -4.5742 -3.9418 15 1 1.2129 -5.6864 -3.8486 16 1 2.8261 -4.5839 -5.2848 17 1 3.2369 -4.7460 -2.9004 18 6 1.8381 -3.2111 1.1886 19 6 1.3266 -2.4973 2.4414 20 6 1.6664 -3.3161 3.6601 21 8 2.2576 -4.3629 3.5391 22 8 1.3133 -2.8819 4.8803 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 1.6583 2.1311 -0.0004 27 1 4.1191 2.1332 0.0001 28 1 5.3564 0.0056 0.0005 29 1 4.1353 -2.1308 0.0099 30 1 1.3004 -4.1527 -1.1594 31 1 2.8421 -3.2872 -1.3655 32 1 0.8982 -2.6636 -5.6015 33 1 1.3676 -4.1912 1.1111 34 1 2.9194 -3.3316 1.2550 35 1 1.7973 -1.5171 2.5189 36 1 0.2453 -2.3769 2.3750 37 1 1.5534 -3.4412 5.6317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061895226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:35 Heat of formation + Delta-G solvation = -82.745844 kcal Electronic energy + Delta-G solvation = -20109.781643 eV Core-core repulsion = 17044.112792 eV Total energy + Delta-G solvation = -3065.668852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43987 -40.72210 -37.73735 -37.05885 -34.77828 -33.45743 -32.73615 -30.87212 -28.97296 -27.35780 -25.24443 -24.29751 -22.44413 -21.93321 -21.03508 -19.17013 -18.84142 -17.84799 -17.64269 -17.06938 -16.48787 -16.32600 -15.77209 -15.66928 -15.15380 -14.61681 -14.43520 -14.14684 -14.07124 -13.87674 -13.76907 -13.22140 -12.96507 -12.74668 -12.62854 -12.53868 -12.44767 -12.19070 -12.07873 -11.87294 -11.77833 -11.64002 -11.42489 -10.76342 -9.56829 -9.26271 -9.20567 -8.25038 -6.26253 0.55899 0.62000 1.18911 1.32788 1.34336 1.43185 2.03311 2.34160 2.93841 3.09170 3.20891 3.78098 3.99914 4.09861 4.18197 4.29780 4.38853 4.54834 4.59867 4.68964 4.70644 4.83634 4.84511 4.93647 4.95519 5.03512 5.09984 5.17418 5.50506 5.58051 5.59917 5.66264 5.70358 5.86223 5.91261 6.13722 6.52562 6.69406 6.83109 6.99927 7.35897 8.90891 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.007569 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.913913 B = 3698.307243 C = 4699.208696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.168 4.168 7 C 0.104 3.896 8 N -0.496 5.496 9 C 0.175 3.825 10 C -0.505 4.505 11 H 0.055 0.945 12 C 0.014 3.986 13 N -0.944 5.944 14 Si 0.932 3.068 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.257 1.257 18 C 0.070 3.930 19 C -0.100 4.100 20 C 0.494 3.506 21 O -0.553 6.553 22 O -0.508 6.508 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.032 0.968 31 H -0.013 1.013 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 3.907 16.891 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.188 4.188 7 C 0.010 3.990 8 N -0.217 5.217 9 C 0.050 3.950 10 C -0.543 4.543 11 H 0.073 0.927 12 C -0.183 4.183 13 N -0.585 5.585 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.181 1.181 18 C -0.057 4.057 19 C -0.138 4.138 20 C 0.338 3.662 21 O -0.444 6.444 22 O -0.322 6.322 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.161 0.839 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.123 0.877 30 H 0.050 0.950 31 H 0.005 0.995 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 2.707 3.932 16.370 17.052 hybrid contribution 1.355 -1.515 -0.410 2.073 sum 4.062 2.417 15.960 16.645 Atomic orbital electron populations 1.20622 0.90503 1.02218 1.02305 1.20049 0.97104 0.91809 0.98745 1.21273 0.94768 0.97511 1.00699 1.21373 0.94251 0.98507 1.00506 1.21183 1.00480 0.92060 1.00733 1.21671 0.95082 0.98805 1.03269 1.18677 0.90210 0.91131 0.98954 1.59508 1.56789 1.03278 1.02159 1.20035 0.93961 0.93694 0.87304 1.21227 1.35094 1.07572 0.90405 0.92704 1.25656 0.96241 1.00664 0.95784 1.70021 1.47928 1.40948 0.99604 0.85935 0.79820 0.80733 0.77821 1.19008 1.20970 1.18149 1.21878 0.98681 0.96587 0.88599 1.21172 1.05953 0.99205 0.87470 1.23387 0.73892 0.83689 0.85223 1.90720 1.40392 1.25784 1.87493 1.84500 1.75360 1.55155 1.17157 0.89776 0.92116 0.92465 0.83932 0.83455 0.84599 0.87729 0.95024 0.99498 0.92626 0.90381 0.94928 0.87229 0.85421 0.71015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.27 9.56 71.24 0.68 -2.59 16 2 C -0.08 -2.67 5.63 -19.73 -0.11 -2.78 16 3 C -0.12 -3.70 9.70 22.25 0.22 -3.49 16 4 C -0.13 -3.56 10.04 22.29 0.22 -3.33 16 5 C -0.13 -3.83 10.04 22.25 0.22 -3.61 16 6 C -0.17 -6.09 8.43 22.40 0.19 -5.90 16 7 C 0.10 3.96 2.79 38.21 0.11 4.07 16 8 N -0.50 -19.73 3.45 -699.60 -2.41 -22.14 16 9 C 0.18 8.36 3.68 85.56 0.32 8.67 16 10 C -0.50 -28.53 9.28 25.60 0.24 -28.29 16 11 H 0.05 3.39 6.42 -2.91 -0.02 3.37 16 12 C 0.01 0.81 5.47 84.65 0.46 1.27 16 13 N -0.94 -58.61 13.96 21.44 0.30 -58.32 16 14 Si 0.93 44.45 27.47 68.60 1.88 46.33 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 17 H -0.26 -11.70 6.54 99.48 0.65 -11.05 16 18 C 0.07 2.31 4.11 86.30 0.35 2.67 16 19 C -0.10 -2.56 5.79 29.85 0.17 -2.39 16 20 C 0.49 12.04 8.33 71.24 0.59 12.64 16 21 O -0.55 -17.18 16.74 21.95 0.37 -16.81 16 22 O -0.51 -8.76 13.42 -51.44 -0.69 -9.45 16 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.06 1.84 8.09 -2.39 -0.02 1.82 16 25 H 0.06 2.29 6.48 -2.38 -0.02 2.28 16 26 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 29 H 0.10 3.82 7.00 -2.91 -0.02 3.80 16 30 H 0.03 1.49 7.36 -2.39 -0.02 1.47 16 31 H -0.01 -0.62 6.24 -2.39 -0.01 -0.63 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.08 2.64 7.89 -2.39 -0.02 2.62 16 34 H 0.03 1.13 6.88 -2.39 -0.02 1.11 16 35 H 0.11 2.73 7.40 -2.38 -0.02 2.71 16 36 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.43 3.51 9.10 -74.06 -0.67 2.84 16 Total: -1.00 -71.13 310.24 3.46 -67.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.35 Total: 15.78 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 3.66 Total: -23.06 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.11 Total: -80.46 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.32 Total: -26.26 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -71.13 3.46 -67.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061895226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.078 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds