Wall clock time and date at job start Mon Mar 30 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00602 * 180.02562 * 12 11 10 14 14 C 1.38796 * 119.88066 * 0.02562 * 13 12 11 15 15 C 1.38259 * 119.71208 * 179.83188 * 14 13 12 16 16 C 1.37789 * 120.04726 * 359.97438 * 15 14 13 17 17 C 1.38936 * 120.87171 * 0.34125 * 16 15 14 18 18 C 1.38418 * 119.89072 * 179.72601 * 13 12 11 19 19 O 1.36146 * 111.22235 * 179.29618 * 17 16 15 20 20 C 1.43770 * 109.23415 * 19.11388 * 19 17 16 21 21 C 1.51667 * 132.10520 * 180.92192 * 16 15 14 22 22 H 1.09000 * 110.93629 * 282.29888 * 21 16 15 23 23 N 1.46907 * 110.93441 * 45.97247 * 21 16 15 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.08003 * 120.14582 * 359.84765 * 14 13 12 32 32 H 1.07994 * 119.97146 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.89539 * 0.02562 * 18 13 12 34 34 H 1.08997 * 110.74580 * 90.51370 * 20 19 17 35 35 H 1.08997 * 110.75045 * 213.68311 * 20 19 17 36 36 H 1.00896 * 110.99650 * 180.02562 * 23 21 16 37 37 H 1.00902 * 110.99498 * 303.95670 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 8 6.0276 -3.9841 -0.0008 13 6 7.3749 -4.1623 -0.0004 14 6 8.2182 -3.0599 0.0012 15 6 9.5883 -3.2452 0.0051 16 6 10.1121 -4.5197 0.0079 17 6 9.2802 -5.6324 -0.0002 18 6 7.9013 -5.4424 0.0046 19 8 10.0015 -6.7870 -0.0112 20 6 11.3409 -6.5129 0.4335 21 6 11.5392 -5.0325 0.0305 22 1 11.9965 -4.9552 -0.9559 23 7 12.3381 -4.3175 1.0348 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 5.9147 -2.1229 -0.8901 30 1 5.9147 -2.1231 0.8899 31 1 7.8059 -2.0616 -0.0004 32 1 10.2483 -2.3905 0.0059 33 1 7.2401 -6.2963 0.0079 34 1 11.4213 -6.6331 1.5138 35 1 12.0571 -7.1548 -0.0794 36 1 13.2879 -4.6577 1.0503 37 1 12.3135 -3.3217 0.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062803469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:53 Heat of formation + Delta-G solvation = -50.314409 kcal Electronic energy + Delta-G solvation = -18767.492682 eV Core-core repulsion = 15703.230163 eV Total energy + Delta-G solvation = -3064.262519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37442 -39.44206 -36.47844 -35.05287 -34.05989 -31.91696 -30.62685 -29.51026 -28.30789 -27.23833 -23.78578 -23.30271 -21.68367 -21.18768 -20.21290 -18.29118 -17.02974 -17.00951 -16.75909 -16.31214 -15.91524 -15.63351 -15.01788 -14.62189 -14.34616 -14.15049 -13.63713 -13.55992 -12.90002 -12.75518 -12.61259 -12.49090 -12.04370 -11.68751 -11.47098 -11.15594 -10.93749 -10.65070 -10.54661 -10.09570 -9.86762 -9.75481 -9.33140 -9.25899 -8.64344 -8.58134 -8.05192 -6.07894 -4.06918 1.22604 1.26221 2.78685 3.27500 3.35193 3.37280 3.52411 3.62676 3.97267 4.16528 4.38078 4.41082 4.66113 4.72739 5.05653 5.08002 5.11803 5.25009 5.27556 5.39416 5.44299 5.48547 5.72735 5.82982 5.98231 6.13095 6.29235 6.31775 6.38215 6.44545 6.55668 6.75668 6.87551 6.95872 7.18936 7.31054 7.51798 7.73480 8.49322 8.97018 9.53327 11.05453 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045111 B = 0.003182 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.545149 B = 8797.354658 C = 9343.347838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.057 3.943 12 O -0.309 6.309 13 C 0.179 3.821 14 C -0.237 4.237 15 C -0.022 4.022 16 C -0.216 4.216 17 C 0.148 3.852 18 C -0.178 4.178 19 O -0.301 6.301 20 C 0.058 3.942 21 C 0.108 3.892 22 H 0.061 0.939 23 N -0.835 5.835 24 H 0.264 0.736 25 H 0.014 0.986 26 H 0.018 0.982 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.344 0.656 37 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.476 -8.710 -0.045 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.139 4.139 11 C -0.018 4.018 12 O -0.222 6.222 13 C 0.132 3.868 14 C -0.256 4.256 15 C -0.041 4.041 16 C -0.217 4.217 17 C 0.102 3.898 18 C -0.198 4.198 19 O -0.214 6.214 20 C -0.018 4.018 21 C -0.003 4.003 22 H 0.079 0.921 23 N -0.366 5.366 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 25.569 -9.268 0.424 27.200 hybrid contribution 1.165 1.602 -0.800 2.136 sum 26.734 -7.666 -0.376 27.814 Atomic orbital electron populations 1.69910 1.06299 1.26967 1.50832 1.25027 0.94760 0.99176 0.94504 0.86771 0.80337 0.83607 0.78523 1.20237 1.21291 1.19027 1.21069 0.89100 0.94686 1.51141 0.90795 1.19514 0.97564 0.91094 0.96521 1.21531 0.88716 1.00717 1.02945 1.23266 0.97781 0.79726 1.01012 1.86122 1.17495 1.31440 1.87148 1.18518 0.83496 0.92663 0.92121 1.21222 0.93558 0.98806 1.11981 1.19927 0.94225 0.94976 0.94924 1.20384 0.94059 0.94081 1.13197 1.18936 0.91593 0.84739 0.94539 1.19202 0.91403 0.96170 1.13000 1.86838 1.23086 1.29548 1.81958 1.23904 0.81916 0.94633 1.01349 1.21356 0.91372 0.93592 0.94006 0.92119 1.58668 1.16784 1.09258 1.51928 0.92639 0.96787 0.96342 0.91467 0.91516 0.92152 0.92105 0.84574 0.85921 0.84501 0.89393 0.87847 0.84338 0.83733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.10 -2.01 5.52 -26.74 -0.15 -2.15 16 11 C 0.06 0.93 4.74 37.15 0.18 1.10 16 12 O -0.31 -5.15 10.13 -19.42 -0.20 -5.35 16 13 C 0.18 2.67 6.67 -39.31 -0.26 2.41 16 14 C -0.24 -3.09 9.04 -39.37 -0.36 -3.45 16 15 C -0.02 -0.25 9.93 -39.74 -0.39 -0.64 16 16 C -0.22 -2.49 5.91 -104.05 -0.61 -3.10 16 17 C 0.15 1.95 7.03 -38.97 -0.27 1.68 16 18 C -0.18 -2.54 10.00 -39.16 -0.39 -2.93 16 19 O -0.30 -3.65 11.10 -20.21 -0.22 -3.87 16 20 C 0.06 0.48 7.73 38.05 0.29 0.77 16 21 C 0.11 0.90 4.27 -67.49 -0.29 0.61 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 N -0.83 -5.54 9.33 -4.48 -0.04 -5.58 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 26 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.06 0.91 7.66 -51.93 -0.40 0.51 16 30 H 0.06 0.93 7.65 -51.93 -0.40 0.53 16 31 H 0.14 1.64 6.29 -52.48 -0.33 1.31 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.34 1.43 9.08 -39.29 -0.36 1.07 16 37 H 0.35 2.02 8.93 -39.29 -0.35 1.66 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -32.06 310.20 -7.63 -39.68 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.14 Total: 0.03 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.80 Total: -19.34 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.73 Total: -32.54 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.42 Total: -9.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.06 -7.63 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.630 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds