Wall clock time and date at job start Mon Mar 30 2020 06:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00602 * 180.02562 * 12 11 10 14 14 C 1.38796 * 119.88066 * 0.02562 * 13 12 11 15 15 C 1.38259 * 119.71208 * 179.83188 * 14 13 12 16 16 C 1.37789 * 120.04726 * 359.97438 * 15 14 13 17 17 C 1.38936 * 120.87171 * 0.34125 * 16 15 14 18 18 C 1.38418 * 119.89072 * 179.72601 * 13 12 11 19 19 O 1.36146 * 111.22235 * 179.29618 * 17 16 15 20 20 C 1.43770 * 109.23415 * 19.11388 * 19 17 16 21 21 C 1.51667 * 132.10520 * 180.92192 * 16 15 14 22 22 H 1.09000 * 110.93629 * 282.29888 * 21 16 15 23 23 N 1.46907 * 110.93441 * 45.97247 * 21 16 15 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.08003 * 120.14582 * 359.84765 * 14 13 12 32 32 H 1.07994 * 119.97146 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.89539 * 0.02562 * 18 13 12 34 34 H 1.08997 * 110.74580 * 90.51370 * 20 19 17 35 35 H 1.08997 * 110.75045 * 213.68311 * 20 19 17 36 36 H 1.00896 * 110.99650 * 180.02562 * 23 21 16 37 37 H 1.00902 * 110.99498 * 303.95670 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 8 6.0276 -3.9841 -0.0008 13 6 7.3749 -4.1623 -0.0004 14 6 8.2182 -3.0599 0.0012 15 6 9.5883 -3.2452 0.0051 16 6 10.1121 -4.5197 0.0079 17 6 9.2802 -5.6324 -0.0002 18 6 7.9013 -5.4424 0.0046 19 8 10.0015 -6.7870 -0.0112 20 6 11.3409 -6.5129 0.4335 21 6 11.5392 -5.0325 0.0305 22 1 11.9965 -4.9552 -0.9559 23 7 12.3381 -4.3175 1.0348 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 5.9147 -2.1229 -0.8901 30 1 5.9147 -2.1231 0.8899 31 1 7.8059 -2.0616 -0.0004 32 1 10.2483 -2.3905 0.0059 33 1 7.2401 -6.2963 0.0079 34 1 11.4213 -6.6331 1.5138 35 1 12.0571 -7.1548 -0.0794 36 1 13.2879 -4.6577 1.0503 37 1 12.3135 -3.3217 0.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062803469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:52 Heat of formation + Delta-G solvation = -73.213360 kcal Electronic energy + Delta-G solvation = -18768.485655 eV Core-core repulsion = 15703.230163 eV Total energy + Delta-G solvation = -3065.255492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.23651 -40.54244 -37.51025 -36.01036 -35.57928 -33.85712 -31.62561 -30.44109 -29.37463 -28.57824 -25.20900 -24.36454 -22.83378 -22.00154 -21.87459 -19.39152 -18.87996 -17.85274 -17.68124 -17.28271 -17.17403 -16.53130 -16.21875 -15.80745 -15.48369 -15.13458 -15.01894 -14.77854 -14.45666 -14.06879 -13.65303 -13.58222 -13.37185 -12.94847 -12.82083 -12.36247 -12.24333 -11.89639 -11.82387 -11.73029 -11.64043 -11.36884 -11.33331 -10.76757 -9.85478 -9.63847 -8.99095 -8.29325 -6.35181 0.26162 0.30239 1.38320 1.40858 1.52558 1.82243 2.37413 2.54715 2.68075 3.05919 3.32503 3.49745 3.63606 3.87013 4.01874 4.05154 4.08091 4.16641 4.28368 4.41794 4.49787 4.54483 4.66254 4.71486 4.77215 4.92467 4.97182 5.06920 5.24372 5.34794 5.39837 5.43774 5.51157 5.62879 6.01930 6.10749 6.26418 6.40951 6.54808 6.73219 7.29322 8.87745 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045111 B = 0.003182 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.545149 B = 8797.354658 C = 9343.347838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.538 4.538 8 H 0.028 0.972 9 C -0.005 4.005 10 C -0.096 4.096 11 C 0.067 3.933 12 O -0.331 6.331 13 C 0.155 3.845 14 C -0.240 4.240 15 C -0.020 4.020 16 C -0.214 4.214 17 C 0.133 3.867 18 C -0.199 4.199 19 O -0.319 6.319 20 C 0.051 3.949 21 C 0.115 3.885 22 H 0.078 0.922 23 N -0.839 5.839 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.359 0.641 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.483 -7.162 -0.077 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.576 4.576 8 H 0.046 0.954 9 C -0.043 4.043 10 C -0.134 4.134 11 C -0.007 4.007 12 O -0.244 6.244 13 C 0.109 3.891 14 C -0.259 4.259 15 C -0.038 4.038 16 C -0.216 4.216 17 C 0.087 3.913 18 C -0.218 4.218 19 O -0.232 6.232 20 C -0.024 4.024 21 C 0.003 3.997 22 H 0.095 0.905 23 N -0.374 5.374 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 29.618 -7.747 0.397 30.617 hybrid contribution -0.055 0.958 -0.778 1.235 sum 29.564 -6.789 -0.381 30.336 Atomic orbital electron populations 1.70083 1.08542 1.28323 1.52432 1.26109 0.95696 1.03895 0.93890 0.85572 0.79661 0.77530 0.79373 1.18940 1.21153 1.16179 1.21455 0.92103 0.93174 1.50894 0.95359 1.19424 0.93937 0.93422 0.97504 1.21314 0.91779 0.98484 1.01837 1.23014 0.94909 0.80187 1.02607 1.86044 1.19029 1.31342 1.88027 1.18678 0.82801 0.93575 0.94092 1.21432 0.94237 0.98617 1.11602 1.20291 0.93953 0.96038 0.93521 1.20845 0.95743 0.93689 1.11274 1.19100 0.91482 0.85933 0.94766 1.19300 0.92313 0.96061 1.14136 1.86818 1.24731 1.29625 1.82061 1.24222 0.80689 0.95587 1.01853 1.21340 0.89850 0.93195 0.95292 0.90473 1.58616 1.17783 1.09719 1.51242 0.92421 0.95226 0.95141 0.92748 0.92710 0.90421 0.90545 0.83366 0.82615 0.85308 0.89447 0.84727 0.82567 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 2 C 0.00 0.04 5.47 84.66 0.46 0.50 16 3 Si 0.96 43.24 27.47 68.60 1.88 45.13 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 7 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 10 C -0.10 -3.83 5.52 30.59 0.17 -3.66 16 11 C 0.07 2.11 4.74 71.98 0.34 2.45 16 12 O -0.33 -11.02 10.13 -92.39 -0.94 -11.96 16 13 C 0.15 4.55 6.67 22.45 0.15 4.70 16 14 C -0.24 -5.76 9.04 22.41 0.20 -5.56 16 15 C -0.02 -0.39 9.93 22.17 0.22 -0.17 16 16 C -0.21 -4.43 5.91 -19.49 -0.12 -4.55 16 17 C 0.13 3.41 7.03 22.67 0.16 3.57 16 18 C -0.20 -5.75 10.00 22.54 0.23 -5.53 16 19 O -0.32 -7.40 11.10 -95.22 -1.06 -8.46 16 20 C 0.05 0.73 7.73 72.56 0.56 1.29 16 21 C 0.11 1.55 4.27 45.06 0.19 1.74 16 22 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 23 N -0.84 -8.18 9.33 -168.08 -1.57 -9.75 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 26 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.08 2.16 7.66 -2.39 -0.02 2.14 16 30 H 0.08 2.15 7.65 -2.39 -0.02 2.13 16 31 H 0.15 3.11 6.29 -2.91 -0.02 3.09 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.36 1.68 9.08 -89.70 -0.81 0.87 16 37 H 0.36 2.74 8.93 -89.69 -0.80 1.94 16 Total: -1.00 -71.67 310.20 0.98 -70.69 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.58 Total: 10.75 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 2.94 Total: -36.39 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.27 Total: -69.77 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.99 Total: -20.41 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -71.67 0.98 -70.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.522 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds