Wall clock time and date at job start Mon Mar 30 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86806 * 119.99611 * 2 1 4 4 H 1.48503 * 109.46476 * 239.99791 * 3 2 1 5 5 H 1.48498 * 109.47397 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47213 * 120.00019 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46482 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46474 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.46862 * 180.02562 * 11 10 9 13 13 C 1.35891 * 117.00054 * 180.02562 * 12 11 10 14 14 C 1.38794 * 119.88513 * 359.97438 * 13 12 11 15 15 C 1.38257 * 119.71250 * 179.81841 * 14 13 12 16 16 C 1.37792 * 120.04649 * 0.23839 * 15 14 13 17 17 C 1.38930 * 120.87414 * 359.90844 * 16 15 14 18 18 C 1.38418 * 119.88616 * 180.02562 * 13 12 11 19 19 O 1.36152 * 111.21504 * 179.46043 * 17 16 15 20 20 C 1.43777 * 109.22256 * 19.40178 * 19 17 16 21 21 C 1.51671 * 132.08853 * 181.24145 * 16 15 14 22 22 H 1.09000 * 111.10298 * 45.57121 * 21 16 15 23 23 N 1.46904 * 110.76006 * 281.93606 * 21 16 15 24 24 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.46950 * 60.00091 * 9 7 2 26 26 H 1.08998 * 109.46951 * 299.99535 * 9 7 2 27 27 H 1.08992 * 109.47599 * 60.00311 * 10 9 7 28 28 H 1.08998 * 109.47003 * 299.99326 * 10 9 7 29 29 H 1.08997 * 109.47832 * 59.99718 * 11 10 9 30 30 H 1.08998 * 109.47201 * 299.98933 * 11 10 9 31 31 H 1.07998 * 120.14147 * 359.79873 * 14 13 12 32 32 H 1.08002 * 119.97260 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.89902 * 0.02670 * 18 13 12 34 34 H 1.08993 * 110.74653 * 90.49178 * 20 19 17 35 35 H 1.08998 * 110.74082 * 213.84294 * 20 19 17 36 36 H 1.00900 * 110.99966 * 186.04201 * 23 21 16 37 37 H 1.00900 * 110.99837 * 309.99534 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 8 2.4091 -6.0732 0.0030 13 6 1.8897 -7.3289 0.0021 14 6 0.5134 -7.5081 0.0002 15 6 -0.0112 -8.7873 -0.0045 16 6 0.8306 -9.8781 -0.0022 17 6 2.2102 -9.7141 0.0029 18 6 2.7351 -8.4249 0.0043 19 8 2.8493 -10.9162 0.0163 20 6 1.9429 -11.9392 -0.4301 21 6 0.5609 -11.3704 -0.0303 22 1 -0.1932 -11.6189 -0.7771 23 7 0.1592 -11.8521 1.2981 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6039 0.8922 28 1 2.8727 -3.6046 -0.8878 29 1 0.8547 -5.0450 -0.8894 30 1 0.8529 -5.0447 0.8905 31 1 -0.1450 -6.6519 0.0026 32 1 -1.0815 -8.9315 -0.0056 33 1 3.8052 -8.2794 0.0071 34 1 2.0093 -12.0693 -1.5102 35 1 2.1375 -12.8793 0.0860 36 1 0.0743 -12.8575 1.3077 37 1 0.8041 -11.5369 2.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062803470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:55 Heat of formation + Delta-G solvation = -55.203177 kcal Electronic energy + Delta-G solvation = -18733.992243 eV Core-core repulsion = 15669.517731 eV Total energy + Delta-G solvation = -3064.474512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.43051 -39.40850 -36.41204 -34.85290 -33.98410 -31.80696 -30.57176 -29.45788 -28.10921 -26.82238 -23.74335 -23.35169 -21.84293 -21.31801 -20.24256 -18.21491 -17.33772 -16.48266 -16.41099 -16.10920 -15.88272 -15.78199 -14.85491 -14.63480 -14.46854 -13.93892 -13.61823 -13.42414 -12.96030 -12.57886 -12.28745 -12.24746 -11.94892 -11.72517 -11.39128 -11.00602 -10.91852 -10.63391 -10.52906 -10.43699 -9.78035 -9.55047 -9.21967 -9.18988 -8.59167 -8.39399 -8.05384 -6.04774 -4.07541 1.25545 1.31130 2.79367 3.32335 3.36441 3.39099 3.55499 3.70357 4.14647 4.22834 4.25536 4.43843 4.66668 4.82626 5.01403 5.05849 5.14800 5.31358 5.36364 5.51307 5.52228 5.58970 5.76666 5.95857 6.07467 6.19742 6.35662 6.39416 6.53191 6.60498 6.64401 6.93755 6.96706 7.02913 7.56697 7.60671 7.69666 7.93582 8.35242 8.98458 9.56871 11.06678 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.059396 B = 0.002903 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.302393 B = 9641.892757 C = 9990.772051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.058 3.942 12 O -0.311 6.311 13 C 0.182 3.818 14 C -0.238 4.238 15 C -0.010 4.010 16 C -0.220 4.220 17 C 0.141 3.859 18 C -0.182 4.182 19 O -0.303 6.303 20 C 0.014 3.986 21 C 0.112 3.888 22 H 0.105 0.895 23 N -0.832 5.832 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.343 0.657 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -24.332 -0.433 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.016 4.016 12 O -0.224 6.224 13 C 0.135 3.865 14 C -0.257 4.257 15 C -0.029 4.029 16 C -0.222 4.222 17 C 0.096 3.904 18 C -0.201 4.201 19 O -0.217 6.217 20 C -0.064 4.064 21 C 0.000 4.000 22 H 0.123 0.877 23 N -0.362 5.362 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.088 -23.776 -0.476 23.781 hybrid contribution 0.968 0.370 -0.061 1.038 sum 1.055 -23.406 -0.537 23.436 Atomic orbital electron populations 1.69950 1.06079 1.26887 1.50564 1.25022 0.94882 0.99348 0.95161 0.86606 0.79547 0.82864 0.78706 1.20171 1.21253 1.20160 1.21147 0.93130 0.90730 1.51037 0.92487 1.19041 0.93808 0.90790 0.97561 1.21739 0.99932 0.90915 1.02059 1.23284 0.92183 0.84980 1.01148 1.86120 1.37538 1.11770 1.87007 1.18551 0.91180 0.85075 0.91714 1.21304 0.94180 0.98379 1.11832 1.20046 0.99351 0.90043 0.93473 1.20340 0.93139 0.94586 1.14128 1.19054 0.90274 0.86265 0.94851 1.19172 1.00475 0.86988 1.13504 1.86837 1.38683 1.14217 1.81973 1.24745 0.89474 0.91081 1.01076 1.21471 0.94966 0.90953 0.92564 0.87687 1.58783 1.56336 1.16497 1.04538 0.92837 0.96275 0.96272 0.92116 0.92135 0.92052 0.92049 0.84388 0.85414 0.84716 0.90065 0.88009 0.84346 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.25 5.52 -26.73 -0.15 -2.39 16 11 C 0.06 1.01 4.74 37.16 0.18 1.19 16 12 O -0.31 -5.36 10.13 -19.40 -0.20 -5.56 16 13 C 0.18 2.79 6.67 -39.31 -0.26 2.53 16 14 C -0.24 -3.27 9.04 -39.37 -0.36 -3.62 16 15 C -0.01 -0.13 10.03 -39.74 -0.40 -0.53 16 16 C -0.22 -2.58 5.82 -104.05 -0.61 -3.19 16 17 C 0.14 1.84 7.03 -38.97 -0.27 1.56 16 18 C -0.18 -2.61 10.00 -39.16 -0.39 -3.00 16 19 O -0.30 -3.56 11.11 -20.22 -0.22 -3.79 16 20 C 0.01 0.11 7.72 38.05 0.29 0.40 16 21 C 0.11 0.95 4.30 -67.49 -0.29 0.66 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 23 N -0.83 -6.38 9.36 -4.48 -0.04 -6.42 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 30 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 31 H 0.14 1.80 6.29 -52.49 -0.33 1.47 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.34 1.71 9.07 -39.29 -0.36 1.36 16 37 H 0.35 2.85 8.94 -39.29 -0.35 2.50 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -31.04 313.88 -8.00 -39.04 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.18 Total: 0.72 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.81 Total: -19.36 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.69 Total: -32.31 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.42 Total: -9.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.04 -8.00 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.168 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds