Wall clock time and date at job start Mon Mar 30 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86806 * 119.99611 * 2 1 4 4 H 1.48503 * 109.46476 * 239.99791 * 3 2 1 5 5 H 1.48498 * 109.47397 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47213 * 120.00019 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99622 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46482 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46474 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.46862 * 180.02562 * 11 10 9 13 13 C 1.35891 * 117.00054 * 180.02562 * 12 11 10 14 14 C 1.38794 * 119.88513 * 359.97438 * 13 12 11 15 15 C 1.38257 * 119.71250 * 179.81841 * 14 13 12 16 16 C 1.37792 * 120.04649 * 0.23839 * 15 14 13 17 17 C 1.38930 * 120.87414 * 359.90844 * 16 15 14 18 18 C 1.38418 * 119.88616 * 180.02562 * 13 12 11 19 19 O 1.36152 * 111.21504 * 179.46043 * 17 16 15 20 20 C 1.43777 * 109.22256 * 19.40178 * 19 17 16 21 21 C 1.51671 * 132.08853 * 181.24145 * 16 15 14 22 22 H 1.09000 * 111.10298 * 45.57121 * 21 16 15 23 23 N 1.46904 * 110.76006 * 281.93606 * 21 16 15 24 24 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.46950 * 60.00091 * 9 7 2 26 26 H 1.08998 * 109.46951 * 299.99535 * 9 7 2 27 27 H 1.08992 * 109.47599 * 60.00311 * 10 9 7 28 28 H 1.08998 * 109.47003 * 299.99326 * 10 9 7 29 29 H 1.08997 * 109.47832 * 59.99718 * 11 10 9 30 30 H 1.08998 * 109.47201 * 299.98933 * 11 10 9 31 31 H 1.07998 * 120.14147 * 359.79873 * 14 13 12 32 32 H 1.08002 * 119.97260 * 179.97438 * 15 14 13 33 33 H 1.07999 * 119.89902 * 0.02670 * 18 13 12 34 34 H 1.08993 * 110.74653 * 90.49178 * 20 19 17 35 35 H 1.08998 * 110.74082 * 213.84294 * 20 19 17 36 36 H 1.00900 * 110.99966 * 186.04201 * 23 21 16 37 37 H 1.00900 * 110.99837 * 309.99534 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 8 2.4091 -6.0732 0.0030 13 6 1.8897 -7.3289 0.0021 14 6 0.5134 -7.5081 0.0002 15 6 -0.0112 -8.7873 -0.0045 16 6 0.8306 -9.8781 -0.0022 17 6 2.2102 -9.7141 0.0029 18 6 2.7351 -8.4249 0.0043 19 8 2.8493 -10.9162 0.0163 20 6 1.9429 -11.9392 -0.4301 21 6 0.5609 -11.3704 -0.0303 22 1 -0.1932 -11.6189 -0.7771 23 7 0.1592 -11.8521 1.2981 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8714 -3.6039 0.8922 28 1 2.8727 -3.6046 -0.8878 29 1 0.8547 -5.0450 -0.8894 30 1 0.8529 -5.0447 0.8905 31 1 -0.1450 -6.6519 0.0026 32 1 -1.0815 -8.9315 -0.0056 33 1 3.8052 -8.2794 0.0071 34 1 2.0093 -12.0693 -1.5102 35 1 2.1375 -12.8793 0.0860 36 1 0.0743 -12.8575 1.3077 37 1 0.8041 -11.5369 2.0072 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062803470.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:54 Heat of formation + Delta-G solvation = -76.090481 kcal Electronic energy + Delta-G solvation = -18734.897985 eV Core-core repulsion = 15669.517731 eV Total energy + Delta-G solvation = -3065.380253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.31377 -40.57572 -37.51009 -35.96518 -35.49362 -33.68371 -31.63530 -30.43527 -29.10206 -28.35967 -25.39506 -24.37668 -22.98553 -22.23155 -21.90812 -19.36023 -18.46090 -18.14954 -17.33378 -17.20345 -17.05190 -16.77936 -16.46620 -15.81186 -15.53214 -15.02037 -14.74929 -14.48939 -14.45586 -13.94406 -13.64167 -13.57852 -13.08999 -12.87028 -12.83340 -12.50252 -12.43904 -12.30877 -11.82583 -11.72080 -11.55166 -11.40910 -11.25591 -10.56114 -9.85380 -9.60705 -9.06558 -8.21875 -6.32720 0.24083 0.28917 1.41137 1.43911 1.51825 1.79651 2.40093 2.53305 2.67327 3.11942 3.40869 3.52511 3.64283 3.80366 3.97833 4.04701 4.08878 4.19343 4.28370 4.44014 4.44079 4.55581 4.64323 4.80000 4.82330 4.95292 5.08001 5.10643 5.26633 5.36658 5.39591 5.48069 5.66262 5.80792 5.97358 6.07093 6.20027 6.38654 6.51844 6.82466 7.36443 8.89890 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.059396 B = 0.002903 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.302393 B = 9641.892757 C = 9990.772051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.097 4.097 11 C 0.070 3.930 12 O -0.327 6.327 13 C 0.157 3.843 14 C -0.245 4.245 15 C -0.012 4.012 16 C -0.216 4.216 17 C 0.136 3.864 18 C -0.197 4.197 19 O -0.318 6.318 20 C 0.010 3.990 21 C 0.117 3.883 22 H 0.124 0.876 23 N -0.836 5.836 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.360 0.640 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -25.924 -0.556 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.135 4.135 11 C -0.004 4.004 12 O -0.241 6.241 13 C 0.111 3.889 14 C -0.264 4.264 15 C -0.030 4.030 16 C -0.218 4.218 17 C 0.090 3.910 18 C -0.217 4.217 19 O -0.232 6.232 20 C -0.066 4.066 21 C 0.005 3.995 22 H 0.141 0.859 23 N -0.367 5.367 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.176 0.824 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.082 -25.410 -0.601 25.418 hybrid contribution 0.949 0.693 -0.020 1.175 sum 1.030 -24.717 -0.621 24.746 Atomic orbital electron populations 1.70072 1.07683 1.27992 1.51348 1.25949 0.95804 1.03279 0.94583 0.85497 0.78294 0.78078 0.79180 1.19221 1.20688 1.19237 1.21610 0.93621 0.92206 1.51059 0.92189 1.18903 0.94125 0.92038 0.95717 1.21449 0.98884 0.91272 1.01900 1.22958 0.91599 0.83959 1.01881 1.86036 1.37618 1.12504 1.87933 1.18707 0.92130 0.84277 0.93785 1.21419 0.93519 0.99443 1.11980 1.20305 1.00600 0.89441 0.92670 1.20762 0.92504 0.96517 1.11997 1.19135 0.91036 0.86311 0.94499 1.19263 1.00428 0.87725 1.14258 1.86824 1.40038 1.14307 1.82025 1.25076 0.88228 0.90919 1.02395 1.21527 0.95937 0.88552 0.93459 0.85875 1.58752 1.56125 1.17929 1.03938 0.92617 0.98039 0.98096 0.92269 0.92221 0.91296 0.91422 0.84161 0.83186 0.85037 0.88661 0.85240 0.82440 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.15 9.11 25.60 0.23 -30.91 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.53 4.97 29.85 0.15 1.67 16 10 C -0.10 -4.10 5.52 30.60 0.17 -3.93 16 11 C 0.07 2.49 4.74 71.98 0.34 2.83 16 12 O -0.33 -11.46 10.13 -92.32 -0.94 -12.40 16 13 C 0.16 4.87 6.67 22.45 0.15 5.02 16 14 C -0.24 -6.62 9.04 22.41 0.20 -6.42 16 15 C -0.01 -0.27 10.03 22.17 0.22 -0.04 16 16 C -0.22 -4.66 5.82 -19.49 -0.11 -4.78 16 17 C 0.14 3.42 7.03 22.66 0.16 3.58 16 18 C -0.20 -5.72 10.00 22.54 0.23 -5.49 16 19 O -0.32 -6.94 11.11 -95.28 -1.06 -8.00 16 20 C 0.01 0.13 7.72 72.56 0.56 0.69 16 21 C 0.12 1.63 4.30 45.06 0.19 1.82 16 22 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 23 N -0.84 -10.41 9.36 -168.08 -1.57 -11.98 16 24 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.30 7.66 -2.39 -0.02 2.28 16 30 H 0.07 2.28 7.65 -2.39 -0.02 2.26 16 31 H 0.14 3.63 6.29 -2.91 -0.02 3.62 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.13 0.88 8.10 -2.39 -0.02 0.87 16 36 H 0.36 2.41 9.07 -89.69 -0.81 1.60 16 37 H 0.34 4.86 8.94 -89.69 -0.80 4.06 16 Total: -1.00 -66.80 313.88 1.17 -65.62 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.53 Total: 11.77 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 2.95 Total: -35.40 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.29 Total: -67.77 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -1.99 Total: -20.40 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.80 1.17 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803470.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.467 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds