Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37643 * 120.09773 * 2 1 4 4 C 1.39240 * 119.94719 * 179.97438 * 3 2 1 5 5 N 1.39002 * 119.92843 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00085 * 6.29837 * 5 4 3 7 7 C 1.46497 * 119.99904 * 186.29014 * 5 4 3 8 8 H 1.08994 * 109.47796 * 355.64503 * 7 5 4 9 9 C 1.53002 * 109.47245 * 115.64927 * 7 5 4 10 10 C 1.50707 * 109.47376 * 235.64527 * 7 5 4 11 11 H 1.07996 * 119.99726 * 0.02562 * 10 7 5 12 12 C 1.37871 * 120.00043 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00176 * 359.72267 * 12 10 7 14 14 Si 1.86800 * 119.99791 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47266 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47125 * 119.99920 * 14 12 10 17 17 H 1.48497 * 109.47113 * 239.99820 * 14 12 10 18 18 C 1.39240 * 120.14435 * 0.27714 * 4 3 2 19 19 C 1.36581 * 120.20264 * 359.44301 * 18 4 3 20 20 C 1.39853 * 120.09641 * 179.97438 * 2 1 3 21 21 C 1.47375 * 120.07972 * 0.04530 * 20 2 1 22 22 O 1.21520 * 119.99516 * 356.68054 * 21 20 2 23 23 O 1.34759 * 120.00543 * 176.67409 * 21 20 2 24 24 H 1.08994 * 109.47101 * 97.22884 * 1 2 3 25 25 H 1.08996 * 109.46897 * 217.23034 * 1 2 3 26 26 H 1.08999 * 109.46625 * 337.23376 * 1 2 3 27 27 H 1.08003 * 120.02879 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46576 * 269.99406 * 6 5 4 29 29 H 1.09001 * 109.47473 * 29.98904 * 6 5 4 30 30 H 1.08993 * 109.47744 * 149.99935 * 6 5 4 31 31 H 1.08997 * 109.47801 * 180.02562 * 9 7 5 32 32 H 1.09009 * 109.46870 * 300.00108 * 9 7 5 33 33 H 1.09000 * 109.47565 * 59.99646 * 9 7 5 34 34 H 0.97006 * 120.00339 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.90160 * 179.70528 * 18 4 3 36 36 H 1.07998 * 119.97549 * 180.25444 * 19 18 4 37 37 H 0.96692 * 117.00449 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1908 0.0000 4 6 3.5897 1.1872 0.0005 5 7 4.2864 2.3900 0.0000 6 6 3.5622 3.6560 0.1381 7 6 5.7448 2.3917 -0.1384 8 1 6.1099 1.3648 -0.1507 9 6 6.1323 3.0863 -1.4455 10 6 6.3589 3.1293 1.0235 11 1 5.7261 3.5539 1.7887 12 6 7.7285 3.2620 1.1095 13 7 8.4994 2.7402 0.1805 14 14 8.4897 4.1756 2.5501 15 1 7.4148 4.6569 3.4547 16 1 9.3909 3.2608 3.2960 17 1 9.2686 5.3348 2.0453 18 6 4.2858 -0.0187 -0.0047 19 6 3.6070 -1.2039 0.0010 20 6 2.2084 -1.2100 0.0005 21 6 1.4754 -2.4885 0.0001 22 8 0.2617 -2.4931 0.0602 23 8 2.1511 -3.6526 -0.0671 24 1 -0.3633 -0.1293 -1.0194 25 1 -0.3633 -0.8182 0.6217 26 1 -0.3632 0.9476 0.3977 27 1 1.6594 2.1274 -0.0004 28 1 3.2856 4.0258 -0.8493 29 1 2.6620 3.4969 0.7317 30 1 4.2002 4.3873 0.6342 31 1 7.2173 3.0872 -1.5488 32 1 5.6881 2.5529 -2.2860 33 1 5.7673 4.1133 -1.4333 34 1 9.4631 2.8332 0.2412 35 1 5.3658 -0.0170 -0.0091 36 1 4.1506 -2.1371 0.0010 37 1 1.6270 -4.4652 -0.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = -59.842527 kcal Electronic energy + Delta-G solvation = -19721.802510 eV Core-core repulsion = 16657.126820 eV Total energy + Delta-G solvation = -3064.675689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20060 -38.87307 -36.43856 -35.74424 -33.18478 -32.18332 -30.46276 -28.97529 -26.83748 -25.98090 -25.36044 -22.86841 -21.46988 -21.23743 -19.09566 -17.81055 -17.11973 -16.42747 -16.09177 -15.37152 -15.29874 -14.50048 -14.21891 -13.88333 -13.35932 -13.24804 -13.09584 -12.93921 -12.42937 -12.21087 -11.80202 -11.69321 -11.67619 -11.40510 -11.30285 -11.16886 -10.96649 -10.78860 -10.59879 -10.28640 -10.13071 -9.75526 -9.48179 -8.96679 -8.58141 -8.41538 -6.68359 -6.21148 -4.31895 1.34621 1.91362 3.00936 3.17056 3.26092 3.28946 3.40864 3.89964 4.27279 4.31198 5.07445 5.16874 5.21716 5.51140 5.61314 5.77791 5.84511 5.92499 5.99130 6.02328 6.16341 6.18761 6.34575 6.42310 6.55654 6.68080 6.72925 6.79194 6.88406 6.92223 6.99177 7.17564 7.33541 7.53106 7.71086 7.92391 8.11869 8.22764 8.34353 8.73530 9.35677 10.81615 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004810 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.045533 B = 5819.751594 C = 6206.079436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.036 3.964 3 C -0.241 4.241 4 C 0.279 3.721 5 N -0.587 5.587 6 C 0.090 3.910 7 C 0.257 3.743 8 H 0.057 0.943 9 C -0.149 4.149 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.899 3.101 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.222 4.222 19 C -0.006 4.006 20 C -0.234 4.234 21 C 0.533 3.467 22 O -0.536 6.536 23 O -0.519 6.519 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.125 0.875 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.013 0.987 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.768 -5.031 -1.279 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.035 3.965 3 C -0.264 4.264 4 C 0.165 3.835 5 N -0.286 5.286 6 C -0.054 4.054 7 C 0.157 3.843 8 H 0.075 0.925 9 C -0.208 4.208 10 C -0.568 4.568 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.727 3.273 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.244 4.244 19 C -0.026 4.026 20 C -0.238 4.238 21 C 0.382 3.618 22 O -0.428 6.428 23 O -0.330 6.330 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -9.476 -4.413 -1.314 10.536 hybrid contribution 0.273 0.060 0.720 0.772 sum -9.203 -4.353 -0.594 10.198 Atomic orbital electron populations 1.21170 0.90925 1.02974 1.03146 1.19567 0.95592 0.90890 0.90490 1.20402 0.92074 0.97530 1.16400 1.18304 0.90962 0.87086 0.87112 1.47418 1.08449 1.02184 1.70586 1.21600 0.96592 0.87047 1.00115 1.19114 0.72640 0.98384 0.94180 0.92515 1.22120 1.04401 0.98262 0.95973 1.21358 0.91735 1.36227 1.07512 0.91946 1.24888 0.96972 0.95398 0.96370 1.69868 1.04766 1.44506 1.33398 0.86419 0.79253 0.79480 0.82169 1.19752 1.20798 1.20856 1.20654 1.01032 0.90647 1.12028 1.20782 0.92346 0.97942 0.91514 1.18333 0.93311 0.88974 1.23168 1.20983 0.85338 0.84030 0.71414 1.90751 1.15401 1.87682 1.49010 1.84621 1.45200 1.16971 1.86223 0.91250 0.88512 0.92588 0.85766 0.94064 0.92606 0.90032 0.88753 0.96807 0.95026 0.92548 0.84472 0.85463 0.73883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.87 36.01 0.32 -1.46 16 2 C 0.04 0.59 5.91 -104.23 -0.62 -0.03 16 3 C -0.24 -4.05 8.76 -39.43 -0.35 -4.39 16 4 C 0.28 5.27 6.53 -83.87 -0.55 4.72 16 5 N -0.59 -11.73 2.87 -173.33 -0.50 -12.23 16 6 C 0.09 1.53 9.18 59.85 0.55 2.08 16 7 C 0.26 5.92 2.57 -69.08 -0.18 5.74 16 8 H 0.06 1.40 5.28 -51.93 -0.27 1.12 16 9 C -0.15 -3.34 9.03 37.16 0.34 -3.00 16 10 C -0.53 -13.32 7.96 -34.44 -0.27 -13.59 16 11 H 0.06 1.58 7.03 -52.49 -0.37 1.21 16 12 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -23.41 11.33 55.43 0.63 -22.78 16 14 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.22 -4.11 9.24 -39.81 -0.37 -4.48 16 19 C -0.01 -0.10 9.56 -39.57 -0.38 -0.48 16 20 C -0.23 -3.87 5.88 -104.97 -0.62 -4.49 16 21 C 0.53 8.15 8.23 34.45 0.28 8.43 16 22 O -0.54 -8.86 14.00 -19.28 -0.27 -9.13 16 23 O -0.52 -6.29 12.67 -40.65 -0.52 -6.81 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.10 1.47 5.62 -51.93 -0.29 1.17 16 26 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 27 H 0.12 1.87 6.30 -52.48 -0.33 1.54 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 30 H 0.08 1.47 6.69 -51.93 -0.35 1.12 16 31 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 32 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.03 0.67 7.78 -51.93 -0.40 0.27 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.14 2.69 5.71 -52.49 -0.30 2.39 16 36 H 0.13 1.86 7.60 -52.49 -0.40 1.46 16 37 H 0.40 2.88 9.11 45.56 0.42 3.30 16 LS Contribution 303.18 15.07 4.57 4.57 Total: -1.00 -28.06 303.18 -6.81 -34.86 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -3.77 Total: 5.84 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.93 Total: -9.36 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.13 Total: -35.01 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.79 Total: -15.93 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.06 -6.81 -34.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.978 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds