Wall clock time and date at job start Mon Mar 30 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37643 * 120.09773 * 2 1 4 4 C 1.39240 * 119.94719 * 179.97438 * 3 2 1 5 5 N 1.39002 * 119.92843 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00085 * 6.29837 * 5 4 3 7 7 C 1.46497 * 119.99904 * 186.29014 * 5 4 3 8 8 H 1.08994 * 109.47796 * 355.64503 * 7 5 4 9 9 C 1.53002 * 109.47245 * 115.64927 * 7 5 4 10 10 C 1.50707 * 109.47376 * 235.64527 * 7 5 4 11 11 H 1.07996 * 119.99726 * 0.02562 * 10 7 5 12 12 C 1.37871 * 120.00043 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00176 * 359.72267 * 12 10 7 14 14 Si 1.86800 * 119.99791 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47266 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47125 * 119.99920 * 14 12 10 17 17 H 1.48497 * 109.47113 * 239.99820 * 14 12 10 18 18 C 1.39240 * 120.14435 * 0.27714 * 4 3 2 19 19 C 1.36581 * 120.20264 * 359.44301 * 18 4 3 20 20 C 1.39853 * 120.09641 * 179.97438 * 2 1 3 21 21 C 1.47375 * 120.07972 * 0.04530 * 20 2 1 22 22 O 1.21520 * 119.99516 * 356.68054 * 21 20 2 23 23 O 1.34759 * 120.00543 * 176.67409 * 21 20 2 24 24 H 1.08994 * 109.47101 * 97.22884 * 1 2 3 25 25 H 1.08996 * 109.46897 * 217.23034 * 1 2 3 26 26 H 1.08999 * 109.46625 * 337.23376 * 1 2 3 27 27 H 1.08003 * 120.02879 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46576 * 269.99406 * 6 5 4 29 29 H 1.09001 * 109.47473 * 29.98904 * 6 5 4 30 30 H 1.08993 * 109.47744 * 149.99935 * 6 5 4 31 31 H 1.08997 * 109.47801 * 180.02562 * 9 7 5 32 32 H 1.09009 * 109.46870 * 300.00108 * 9 7 5 33 33 H 1.09000 * 109.47565 * 59.99646 * 9 7 5 34 34 H 0.97006 * 120.00339 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.90160 * 179.70528 * 18 4 3 36 36 H 1.07998 * 119.97549 * 180.25444 * 19 18 4 37 37 H 0.96692 * 117.00449 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1908 0.0000 4 6 3.5897 1.1872 0.0005 5 7 4.2864 2.3900 0.0000 6 6 3.5622 3.6560 0.1381 7 6 5.7448 2.3917 -0.1384 8 1 6.1099 1.3648 -0.1507 9 6 6.1323 3.0863 -1.4455 10 6 6.3589 3.1293 1.0235 11 1 5.7261 3.5539 1.7887 12 6 7.7285 3.2620 1.1095 13 7 8.4994 2.7402 0.1805 14 14 8.4897 4.1756 2.5501 15 1 7.4148 4.6569 3.4547 16 1 9.3909 3.2608 3.2960 17 1 9.2686 5.3348 2.0453 18 6 4.2858 -0.0187 -0.0047 19 6 3.6070 -1.2039 0.0010 20 6 2.2084 -1.2100 0.0005 21 6 1.4754 -2.4885 0.0001 22 8 0.2617 -2.4931 0.0602 23 8 2.1511 -3.6526 -0.0671 24 1 -0.3633 -0.1293 -1.0194 25 1 -0.3633 -0.8182 0.6217 26 1 -0.3632 0.9476 0.3977 27 1 1.6594 2.1274 -0.0004 28 1 3.2856 4.0258 -0.8493 29 1 2.6620 3.4969 0.7317 30 1 4.2002 4.3873 0.6342 31 1 7.2173 3.0872 -1.5488 32 1 5.6881 2.5529 -2.2860 33 1 5.7673 4.1133 -1.4333 34 1 9.4631 2.8332 0.2412 35 1 5.3658 -0.0170 -0.0091 36 1 4.1506 -2.1371 0.0010 37 1 1.6270 -4.4652 -0.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:23 Heat of formation + Delta-G solvation = -75.325367 kcal Electronic energy + Delta-G solvation = -19722.473896 eV Core-core repulsion = 16657.126820 eV Total energy + Delta-G solvation = -3065.347076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43398 -40.19782 -37.85893 -36.92672 -34.97212 -33.46183 -32.09959 -30.44224 -28.12973 -27.34963 -27.27433 -24.22472 -22.82339 -22.67199 -20.58512 -18.98282 -18.63912 -17.99969 -17.55161 -16.92749 -16.52867 -16.10852 -15.52324 -15.35500 -14.82186 -14.53458 -14.42756 -14.29021 -13.90956 -13.60873 -13.32900 -13.10400 -12.97547 -12.90647 -12.79357 -12.72042 -12.45657 -12.39142 -12.25565 -12.13116 -11.61962 -11.15432 -10.96319 -10.58343 -10.49563 -9.72454 -8.28718 -8.00802 -6.31014 0.04251 0.57868 1.39952 1.43691 1.52978 1.75265 2.30881 2.36020 2.53391 2.96383 3.12477 3.86767 3.97828 4.24055 4.37742 4.45609 4.61058 4.65462 4.70498 4.72024 4.89082 4.91052 4.92747 5.02700 5.04802 5.09059 5.25777 5.31217 5.41643 5.53216 5.64829 5.68697 5.81434 5.85088 5.96170 6.13941 6.42199 6.81301 6.84137 7.18227 7.39835 8.87277 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.004810 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.045533 B = 5819.751594 C = 6206.079436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 C -0.234 4.234 4 C 0.258 3.742 5 N -0.601 5.601 6 C 0.090 3.910 7 C 0.262 3.738 8 H 0.034 0.966 9 C -0.136 4.136 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.023 3.977 13 N -0.913 5.913 14 Si 0.957 3.043 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.279 1.279 18 C -0.241 4.241 19 C -0.001 4.001 20 C -0.240 4.240 21 C 0.539 3.461 22 O -0.548 6.548 23 O -0.512 6.512 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 -5.295 -0.931 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 C -0.257 4.257 4 C 0.147 3.853 5 N -0.302 5.302 6 C -0.052 4.052 7 C 0.160 3.840 8 H 0.052 0.948 9 C -0.195 4.195 10 C -0.577 4.577 11 H 0.075 0.925 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.783 3.217 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.204 1.204 18 C -0.263 4.263 19 C -0.020 4.020 20 C -0.244 4.244 21 C 0.388 3.612 22 O -0.442 6.442 23 O -0.326 6.326 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.162 0.838 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -11.155 -4.714 -0.966 12.148 hybrid contribution 0.707 -0.019 0.597 0.925 sum -10.448 -4.733 -0.370 11.476 Atomic orbital electron populations 1.21146 0.89131 1.03827 1.03491 1.19897 0.96895 0.90618 0.89676 1.20577 0.91062 0.98681 1.15369 1.18525 0.91932 0.86664 0.88150 1.47232 1.07286 1.03489 1.72214 1.21692 0.96763 0.85562 1.01209 1.18780 0.74800 0.96728 0.93658 0.94797 1.21932 1.02730 0.98576 0.96249 1.21602 0.91990 1.36058 1.08012 0.92529 1.25575 0.97495 0.96216 0.98460 1.69979 1.04874 1.45560 1.34761 0.85524 0.78332 0.78351 0.79511 1.19452 1.20893 1.20442 1.20620 1.00267 0.91752 1.13700 1.20907 0.92663 0.97869 0.90561 1.18629 0.93353 0.90206 1.22202 1.20699 0.84942 0.84451 0.71135 1.90757 1.15831 1.88071 1.49531 1.84558 1.45307 1.17292 1.85436 0.90575 0.89325 0.90521 0.83767 0.92642 0.90317 0.91530 0.91182 0.95850 0.94593 0.92569 0.86484 0.83847 0.71105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.87 71.24 0.63 -2.42 16 2 C 0.03 0.93 5.91 -19.61 -0.12 0.82 16 3 C -0.23 -7.41 8.76 22.37 0.20 -7.22 16 4 C 0.26 9.66 6.53 38.49 0.25 9.91 16 5 N -0.60 -23.93 2.87 -702.29 -2.02 -25.95 16 6 C 0.09 2.97 9.18 127.77 1.17 4.14 16 7 C 0.26 12.33 2.57 44.25 0.11 12.44 16 8 H 0.03 1.76 5.28 -2.39 -0.01 1.74 16 9 C -0.14 -6.20 9.03 71.98 0.65 -5.55 16 10 C -0.54 -27.44 7.96 25.60 0.20 -27.23 16 11 H 0.06 2.89 7.03 -2.91 -0.02 2.87 16 12 C 0.02 1.17 5.30 84.65 0.45 1.62 16 13 N -0.91 -49.13 11.33 21.44 0.24 -48.88 16 14 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.24 -9.05 9.24 22.12 0.20 -8.85 16 19 C 0.00 -0.02 9.56 22.28 0.21 0.19 16 20 C -0.24 -7.52 5.88 -20.09 -0.12 -7.64 16 21 C 0.54 15.19 8.23 70.23 0.58 15.77 16 22 O -0.55 -16.78 14.00 19.77 0.28 -16.51 16 23 O -0.51 -11.00 12.67 -56.70 -0.72 -11.72 16 24 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 2.46 5.62 -2.39 -0.01 2.45 16 26 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 27 H 0.14 3.90 6.30 -2.91 -0.02 3.88 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 2.17 6.46 -2.39 -0.02 2.15 16 30 H 0.07 2.36 6.69 -2.39 -0.02 2.35 16 31 H 0.07 3.54 6.08 -2.39 -0.01 3.52 16 32 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.03 1.54 7.78 -2.39 -0.02 1.53 16 34 H 0.26 13.59 8.31 -92.70 -0.77 12.82 16 35 H 0.12 4.83 5.71 -2.91 -0.02 4.81 16 36 H 0.14 4.04 7.60 -2.91 -0.02 4.02 16 37 H 0.43 4.75 9.11 -74.06 -0.67 4.07 16 Total: -1.00 -59.47 303.18 4.67 -54.80 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.43 Total: 18.93 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.43 Total: -14.04 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.77 Total: -74.83 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.44 Total: -28.22 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -59.47 4.67 -54.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.524 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds