Wall clock time and date at job start Mon Mar 30 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48499 * 109.47582 * 240.00068 * 3 2 1 5 5 H 1.48499 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00155 * 3 2 1 7 7 C 1.38627 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00257 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.35796 * 116.99905 * 174.94495 * 9 7 2 11 11 C 1.38899 * 119.99406 * 185.26541 * 10 9 7 12 12 C 1.38004 * 120.00694 * 179.72383 * 11 10 9 13 13 C 1.38952 * 119.99294 * 0.55182 * 12 11 10 14 14 N 1.39788 * 120.00739 * 179.70281 * 13 12 11 15 15 C 1.46501 * 119.99729 * 0.02562 * 14 13 12 16 16 H 1.08991 * 109.52380 * 34.87308 * 15 14 13 17 17 C 1.53177 * 109.52088 * 155.00025 * 15 14 13 18 18 C 1.53176 * 109.03466 * 176.88214 * 17 15 14 19 19 C 1.53090 * 109.16622 * 303.01881 * 18 17 15 20 20 O 1.42905 * 109.41177 * 57.60962 * 19 18 17 21 21 C 1.42899 * 114.09615 * 298.83704 * 20 19 18 22 22 C 1.38952 * 119.98762 * 359.71928 * 13 12 11 23 23 C 1.38004 * 119.99284 * 0.02562 * 22 13 12 24 24 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99751 * 359.97438 * 11 10 9 26 26 H 1.07997 * 120.00871 * 180.27190 * 12 11 10 27 27 H 0.96998 * 119.99615 * 180.02562 * 14 13 12 28 28 H 1.08998 * 109.54354 * 296.75620 * 17 15 14 29 29 H 1.09007 * 109.54179 * 57.01677 * 17 15 14 30 30 H 1.09001 * 109.52095 * 62.93167 * 18 17 15 31 31 H 1.09009 * 109.52079 * 183.05136 * 18 17 15 32 32 H 1.08996 * 109.48013 * 177.59051 * 19 18 17 33 33 H 1.09000 * 109.48057 * 297.61395 * 19 18 17 34 34 H 1.08992 * 109.48555 * 301.17789 * 21 20 19 35 35 H 1.09002 * 109.47881 * 181.13932 * 21 20 19 36 36 H 1.07997 * 120.00059 * 179.97438 * 22 13 12 37 37 H 1.08001 * 119.99817 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0702 -3.5046 -0.1077 11 6 1.4350 -4.7343 -0.2243 12 6 2.1822 -5.8889 -0.3389 13 6 3.5701 -5.8223 -0.3262 14 7 4.3271 -6.9923 -0.4360 15 6 3.6573 -8.2887 -0.5652 16 1 2.7441 -8.1704 -1.1483 17 6 4.5898 -9.2788 -1.2697 18 6 3.9097 -10.6500 -1.3293 19 6 3.5543 -11.0968 0.0912 20 8 2.7106 -10.1172 0.7001 21 6 3.3116 -8.8268 0.8258 22 6 4.2052 -4.5925 -0.2039 23 6 3.4576 -3.4377 -0.0946 24 1 -0.4850 0.8400 0.0004 25 1 0.3562 -4.7865 -0.2293 26 1 1.6883 -6.8446 -0.4340 27 1 5.2960 -6.9456 -0.4267 28 1 4.7953 -8.9294 -2.2815 29 1 5.5239 -9.3589 -0.7135 30 1 3.0011 -10.5802 -1.9274 31 1 4.5883 -11.3739 -1.7807 32 1 3.0316 -12.0525 0.0515 33 1 4.4669 -11.2057 0.6771 34 1 4.2210 -8.9057 1.4214 35 1 2.6140 -8.1471 1.3153 36 1 5.2839 -4.5406 -0.1935 37 1 3.9512 -2.4818 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070463824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:00 Heat of formation + Delta-G solvation = -47.140672 kcal Electronic energy + Delta-G solvation = -19242.763133 eV Core-core repulsion = 16178.638237 eV Total energy + Delta-G solvation = -3064.124896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79043 -38.79513 -36.95518 -34.78617 -32.91183 -32.04340 -30.43662 -29.69856 -26.93460 -25.23551 -25.09691 -23.21109 -22.11084 -20.71157 -20.27482 -17.83137 -17.12859 -16.61901 -16.21835 -16.08864 -15.41560 -14.96663 -14.46630 -14.22394 -13.81506 -13.56178 -13.41143 -12.96400 -12.80886 -12.66366 -12.43175 -12.33316 -11.65531 -11.50841 -11.43142 -11.28187 -10.96369 -10.91256 -10.63432 -10.50272 -10.33368 -9.89317 -9.22382 -9.10877 -8.43774 -8.16989 -6.41614 -6.31664 -3.89034 2.20576 2.56238 3.19257 3.20339 3.22986 3.50139 3.98719 4.06781 4.53038 4.59409 4.65015 4.73033 4.89260 5.03439 5.18569 5.21128 5.34182 5.42468 5.50891 5.56404 5.63095 5.67577 5.72348 5.79857 5.94256 6.02020 6.22145 6.25443 6.53174 6.86181 6.88437 7.04319 7.14246 7.32390 7.45201 7.64006 7.95896 8.12567 8.21545 9.14093 9.88493 10.87048 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053661 B = 0.003543 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.665164 B = 7899.971899 C = 8194.264854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.388 4.388 8 H 0.088 0.912 9 O -0.188 6.188 10 C 0.115 3.885 11 C -0.150 4.150 12 C -0.146 4.146 13 C 0.120 3.880 14 N -0.752 5.752 15 C 0.129 3.871 16 H 0.084 0.916 17 C -0.129 4.129 18 C -0.152 4.152 19 C 0.057 3.943 20 O -0.381 6.381 21 C 0.044 3.956 22 C -0.140 4.140 23 C -0.191 4.191 24 H 0.268 0.732 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.391 0.609 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -18.020 -1.431 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 O -0.092 6.092 10 C 0.062 3.938 11 C -0.170 4.170 12 C -0.168 4.168 13 C 0.023 3.977 14 N -0.388 5.388 15 C 0.022 3.978 16 H 0.101 0.899 17 C -0.167 4.167 18 C -0.191 4.191 19 C -0.020 4.020 20 O -0.299 6.299 21 C -0.034 4.034 22 C -0.162 4.162 23 C -0.211 4.211 24 H 0.078 0.922 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.224 0.776 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.940 -17.956 -1.356 20.104 hybrid contribution 1.271 0.927 -0.121 1.578 sum 10.211 -17.028 -1.477 19.910 Atomic orbital electron populations 1.70035 1.05848 1.27404 1.47225 1.25213 0.95793 0.98610 0.97029 0.85837 0.78668 0.80199 0.79008 1.19680 1.20417 1.19678 1.21191 0.91557 0.81133 1.52603 0.89498 1.83988 1.33814 1.11123 1.80318 1.19253 0.90149 0.88233 0.96153 1.20037 0.99356 0.89944 1.07639 1.20242 0.91606 0.97450 1.07466 1.17397 0.90698 0.85777 1.03876 1.44146 1.06752 1.02269 1.85635 1.21293 0.96822 0.83732 0.95996 0.89851 1.21859 0.98579 0.94711 1.01580 1.22180 1.01649 0.96909 0.98328 1.22588 0.94905 0.92115 0.92360 1.87971 1.41471 1.19627 1.80800 1.23228 0.98941 0.84104 0.97151 1.20222 0.98178 0.90961 1.06841 1.20985 0.93724 0.98279 1.08108 0.92229 0.86462 0.86945 0.77565 0.90852 0.91622 0.90717 0.90690 0.88930 0.93345 0.93240 0.88266 0.87639 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.67 55.48 0.76 -25.36 16 2 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.09 9.48 30.88 0.29 -10.80 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.19 -5.48 9.76 -0.05 0.00 -5.48 16 10 C 0.11 2.82 6.65 -39.09 -0.26 2.56 16 11 C -0.15 -3.23 9.98 -39.42 -0.39 -3.63 16 12 C -0.15 -2.66 8.89 -39.40 -0.35 -3.01 16 13 C 0.12 2.05 6.64 -83.70 -0.56 1.49 16 14 N -0.75 -9.85 5.26 -51.98 -0.27 -10.12 16 15 C 0.13 1.48 2.34 -67.79 -0.16 1.33 16 16 H 0.08 1.08 6.48 -51.93 -0.34 0.74 16 17 C -0.13 -1.15 5.50 -26.55 -0.15 -1.29 16 18 C -0.15 -1.18 6.14 -26.59 -0.16 -1.35 16 19 C 0.06 0.49 6.84 37.20 0.25 0.74 16 20 O -0.38 -4.55 10.77 -35.23 -0.38 -4.93 16 21 C 0.04 0.52 6.38 37.21 0.24 0.76 16 22 C -0.14 -2.57 9.89 -39.40 -0.39 -2.96 16 23 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 26 H 0.11 1.80 6.10 -52.49 -0.32 1.48 16 27 H 0.39 4.43 8.62 -40.82 -0.35 4.07 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.32 7.74 -51.93 -0.40 0.92 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -31.54 304.90 -7.33 -38.87 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.92 Total: 6.24 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.09 Total: -19.77 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.49 Total: -35.48 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.38 Total: -10.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.54 -7.33 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070463824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.271 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds