Wall clock time and date at job start Mon Mar 30 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48499 * 109.47582 * 240.00068 * 3 2 1 5 5 H 1.48499 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47050 * 120.00155 * 3 2 1 7 7 C 1.38627 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00257 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.35796 * 116.99905 * 174.94495 * 9 7 2 11 11 C 1.38899 * 119.99406 * 185.26541 * 10 9 7 12 12 C 1.38004 * 120.00694 * 179.72383 * 11 10 9 13 13 C 1.38952 * 119.99294 * 0.55182 * 12 11 10 14 14 N 1.39788 * 120.00739 * 179.70281 * 13 12 11 15 15 C 1.46501 * 119.99729 * 0.02562 * 14 13 12 16 16 H 1.08991 * 109.52380 * 34.87308 * 15 14 13 17 17 C 1.53177 * 109.52088 * 155.00025 * 15 14 13 18 18 C 1.53176 * 109.03466 * 176.88214 * 17 15 14 19 19 C 1.53090 * 109.16622 * 303.01881 * 18 17 15 20 20 O 1.42905 * 109.41177 * 57.60962 * 19 18 17 21 21 C 1.42899 * 114.09615 * 298.83704 * 20 19 18 22 22 C 1.38952 * 119.98762 * 359.71928 * 13 12 11 23 23 C 1.38004 * 119.99284 * 0.02562 * 22 13 12 24 24 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99751 * 359.97438 * 11 10 9 26 26 H 1.07997 * 120.00871 * 180.27190 * 12 11 10 27 27 H 0.96998 * 119.99615 * 180.02562 * 14 13 12 28 28 H 1.08998 * 109.54354 * 296.75620 * 17 15 14 29 29 H 1.09007 * 109.54179 * 57.01677 * 17 15 14 30 30 H 1.09001 * 109.52095 * 62.93167 * 18 17 15 31 31 H 1.09009 * 109.52079 * 183.05136 * 18 17 15 32 32 H 1.08996 * 109.48013 * 177.59051 * 19 18 17 33 33 H 1.09000 * 109.48057 * 297.61395 * 19 18 17 34 34 H 1.08992 * 109.48555 * 301.17789 * 21 20 19 35 35 H 1.09002 * 109.47881 * 181.13932 * 21 20 19 36 36 H 1.07997 * 120.00059 * 179.97438 * 22 13 12 37 37 H 1.08001 * 119.99817 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0702 -3.5046 -0.1077 11 6 1.4350 -4.7343 -0.2243 12 6 2.1822 -5.8889 -0.3389 13 6 3.5701 -5.8223 -0.3262 14 7 4.3271 -6.9923 -0.4360 15 6 3.6573 -8.2887 -0.5652 16 1 2.7441 -8.1704 -1.1483 17 6 4.5898 -9.2788 -1.2697 18 6 3.9097 -10.6500 -1.3293 19 6 3.5543 -11.0968 0.0912 20 8 2.7106 -10.1172 0.7001 21 6 3.3116 -8.8268 0.8258 22 6 4.2052 -4.5925 -0.2039 23 6 3.4576 -3.4377 -0.0946 24 1 -0.4850 0.8400 0.0004 25 1 0.3562 -4.7865 -0.2293 26 1 1.6883 -6.8446 -0.4340 27 1 5.2960 -6.9456 -0.4267 28 1 4.7953 -8.9294 -2.2815 29 1 5.5239 -9.3589 -0.7135 30 1 3.0011 -10.5802 -1.9274 31 1 4.5883 -11.3739 -1.7807 32 1 3.0316 -12.0525 0.0515 33 1 4.4669 -11.2057 0.6771 34 1 4.2210 -8.9057 1.4214 35 1 2.6140 -8.1471 1.3153 36 1 5.2839 -4.5406 -0.1935 37 1 3.9512 -2.4818 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070463824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:00 Heat of formation + Delta-G solvation = -68.576069 kcal Electronic energy + Delta-G solvation = -19243.692642 eV Core-core repulsion = 16178.638237 eV Total energy + Delta-G solvation = -3065.054404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95655 -40.23696 -38.53944 -36.05598 -34.22916 -33.62792 -31.94547 -30.93956 -28.46630 -27.02387 -26.01735 -24.32259 -23.53449 -22.23314 -21.23686 -19.66203 -18.87675 -17.81267 -17.35554 -17.06729 -16.60268 -16.17847 -15.82583 -15.62964 -15.38299 -15.33752 -14.60474 -14.22669 -14.09420 -13.95587 -13.66959 -13.51868 -13.40452 -13.03116 -12.75843 -12.51813 -12.26280 -12.13667 -12.03610 -11.75120 -11.35827 -11.09255 -11.05370 -10.61884 -10.06517 -9.78537 -8.38932 -7.96343 -6.03109 0.57533 0.91475 1.37082 1.48403 1.53439 2.23183 2.45819 2.90806 3.09733 3.24650 3.66030 3.72372 3.91896 3.97909 4.06676 4.13974 4.15545 4.26267 4.49893 4.55753 4.63566 4.66997 4.78915 4.81469 4.91334 4.96736 5.04259 5.11491 5.20266 5.25846 5.31686 5.46902 5.54453 5.77502 5.95050 6.11181 6.23325 6.58880 7.02346 7.06850 7.93289 8.85446 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.053661 B = 0.003543 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.665164 B = 7899.971899 C = 8194.264854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.408 4.408 8 H 0.100 0.900 9 O -0.243 6.243 10 C 0.064 3.936 11 C -0.157 4.157 12 C -0.146 4.146 13 C 0.151 3.849 14 N -0.735 5.735 15 C 0.125 3.875 16 H 0.070 0.930 17 C -0.123 4.123 18 C -0.148 4.148 19 C 0.049 3.951 20 O -0.403 6.403 21 C 0.048 3.952 22 C -0.141 4.141 23 C -0.193 4.193 24 H 0.270 0.730 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.406 0.594 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.935 -20.215 -1.888 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.117 0.883 9 O -0.151 6.151 10 C 0.014 3.986 11 C -0.177 4.177 12 C -0.168 4.168 13 C 0.051 3.949 14 N -0.371 5.371 15 C 0.019 3.981 16 H 0.088 0.912 17 C -0.161 4.161 18 C -0.186 4.186 19 C -0.027 4.027 20 O -0.321 6.321 21 C -0.030 4.030 22 C -0.163 4.163 23 C -0.213 4.213 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.154 0.846 27 H 0.242 0.758 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.215 -20.248 -1.819 23.717 hybrid contribution 0.391 1.165 0.002 1.229 sum 12.606 -19.083 -1.816 22.943 Atomic orbital electron populations 1.70199 1.08016 1.28515 1.49972 1.26548 0.96838 1.02679 0.96398 0.84667 0.77337 0.74466 0.79848 1.18220 1.19851 1.18194 1.21743 0.92398 0.81754 1.52581 0.88311 1.83937 1.35585 1.12335 1.83199 1.19737 0.91574 0.87939 0.99311 1.20214 0.99558 0.90247 1.07655 1.20436 0.92321 0.97155 1.06880 1.17506 0.90534 0.86964 0.99943 1.44201 1.07431 1.01608 1.83843 1.21429 0.97097 0.83380 0.96194 0.91203 1.21836 0.98476 0.94277 1.01534 1.22170 1.01840 0.96790 0.97828 1.22853 0.95281 0.91819 0.92771 1.87950 1.42801 1.19932 1.81399 1.23079 0.98734 0.84220 0.97002 1.20505 0.99841 0.89981 1.05948 1.21070 0.92840 0.99516 1.07870 0.92131 0.87124 0.84607 0.75776 0.90452 0.90010 0.91460 0.88163 0.87489 0.92068 0.92178 0.90357 0.83925 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.74 13.67 21.61 0.30 -58.44 16 2 C -0.03 -1.66 5.49 84.82 0.47 -1.20 16 3 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.41 -24.47 9.48 67.91 0.64 -23.82 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.24 -15.12 9.76 -23.09 -0.23 -15.34 16 10 C 0.06 3.29 6.65 22.59 0.15 3.44 16 11 C -0.16 -7.00 9.98 22.37 0.22 -6.77 16 12 C -0.15 -5.18 8.89 22.39 0.20 -4.98 16 13 C 0.15 4.78 6.64 38.21 0.25 5.03 16 14 N -0.74 -16.49 5.26 -318.36 -1.67 -18.16 16 15 C 0.13 2.49 2.34 45.08 0.11 2.60 16 16 H 0.07 1.63 6.48 -2.39 -0.02 1.61 16 17 C -0.12 -1.67 5.50 30.71 0.17 -1.50 16 18 C -0.15 -1.73 6.14 30.68 0.19 -1.54 16 19 C 0.05 0.67 6.84 72.01 0.49 1.16 16 20 O -0.40 -8.70 10.77 -148.98 -1.60 -10.30 16 21 C 0.05 1.02 6.38 72.01 0.46 1.48 16 22 C -0.14 -4.84 9.89 22.39 0.22 -4.62 16 23 C -0.19 -8.55 9.16 22.37 0.20 -8.34 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 26 H 0.14 4.17 6.10 -2.91 -0.02 4.15 16 27 H 0.41 7.21 8.62 -92.71 -0.80 6.41 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.72 8.14 -2.38 -0.02 0.71 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.97 7.74 -2.39 -0.02 1.95 16 36 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.12 5.38 5.63 -2.91 -0.02 5.36 16 Total: -1.00 -73.41 304.90 2.88 -70.53 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.29 Total: 24.77 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 3.78 Total: -39.07 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -1.38 Total: -76.60 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.83 Total: -25.64 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.41 2.88 -70.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070463824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.951 kcal (2) G-P(sol) polarization free energy of solvation -73.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds