Wall clock time and date at job start Mon Mar 30 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38559 * 119.79946 * 2 1 4 4 C 1.37780 * 120.30075 * 180.02562 * 3 2 1 5 5 C 1.39766 * 119.90309 * 359.97438 * 4 3 2 6 6 C 1.47431 * 120.19462 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00298 * 138.67768 * 6 5 4 8 8 N 1.34777 * 120.00059 * 318.66593 * 6 5 4 9 9 C 1.36909 * 119.99612 * 4.45466 * 8 6 5 10 10 H 1.07994 * 120.00375 * 326.53161 * 9 8 6 11 11 C 1.39027 * 119.99930 * 146.53061 * 9 8 6 12 12 N 1.31378 * 120.00218 * 162.22944 * 11 9 8 13 13 Si 1.86805 * 119.99870 * 342.22990 * 11 9 8 14 14 H 1.48503 * 109.47231 * 86.74591 * 13 11 9 15 15 H 1.48494 * 109.47106 * 206.74423 * 13 11 9 16 16 H 1.48497 * 109.47110 * 326.74297 * 13 11 9 17 17 C 1.46494 * 120.00381 * 184.44866 * 8 6 5 18 18 C 1.53001 * 109.47132 * 353.89034 * 17 8 6 19 19 C 1.52996 * 109.47137 * 113.89073 * 17 8 6 20 20 C 1.40201 * 119.60693 * 0.02562 * 5 4 3 21 21 O 1.35662 * 120.15247 * 179.72878 * 20 5 4 22 22 C 1.38080 * 119.79316 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47279 * 89.99673 * 1 2 3 24 24 H 1.08998 * 109.47352 * 209.99967 * 1 2 3 25 25 H 1.09001 * 109.46912 * 329.99966 * 1 2 3 26 26 H 1.07992 * 119.85083 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.04435 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99913 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47291 * 233.89073 * 17 8 6 30 30 H 1.09009 * 109.46598 * 66.68776 * 18 17 8 31 31 H 1.08992 * 109.47405 * 186.68287 * 18 17 8 32 32 H 1.08997 * 109.47301 * 306.69160 * 18 17 8 33 33 H 1.09004 * 109.47028 * 65.04719 * 19 17 8 34 34 H 1.09003 * 109.47641 * 185.04795 * 19 17 8 35 35 H 1.09000 * 109.47261 * 305.04859 * 19 17 8 36 36 H 0.96701 * 114.00484 * 89.99498 * 21 20 5 37 37 H 1.07994 * 119.95917 * 0.04245 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5733 1.2144 -0.0005 5 6 4.2807 0.0090 -0.0005 6 6 5.7550 0.0144 -0.0017 7 8 6.3666 -0.7741 0.6937 8 7 6.4251 0.8929 -0.7735 9 6 5.7395 1.8398 -1.4861 10 1 4.7620 1.6127 -1.8849 11 6 6.3019 3.0938 -1.6963 12 7 5.8345 3.8726 -2.6455 13 14 7.7222 3.6712 -0.6291 14 1 9.0035 3.1971 -1.2113 15 1 7.7249 5.1550 -0.5691 16 1 7.5674 3.1207 0.7413 17 6 7.8869 0.8347 -0.8498 18 6 8.4088 -0.2013 0.1478 19 6 8.3082 0.4368 -2.2657 20 6 3.5799 -1.2053 -0.0005 21 8 4.2553 -2.3819 -0.0061 22 6 2.1931 -1.1983 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6499 2.1343 -0.0004 27 1 4.1059 2.1540 -0.0009 28 1 6.2271 4.7473 -2.7924 29 1 8.3025 1.8130 -0.6084 30 1 8.0901 -1.1967 -0.1620 31 1 9.4976 -0.1613 0.1770 32 1 8.0104 0.0156 1.1389 33 1 8.0145 1.2192 -2.9656 34 1 9.3898 0.3061 -2.2998 35 1 7.8204 -0.4984 -2.5407 36 1 4.4549 -2.7251 0.8757 37 1 1.6491 -2.1312 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:52 Heat of formation + Delta-G solvation = -22.322042 kcal Electronic energy + Delta-G solvation = -20697.116418 eV Core-core repulsion = 17634.067739 eV Total energy + Delta-G solvation = -3063.048679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96018 -38.45821 -36.41681 -35.19273 -33.06708 -32.09676 -30.72817 -29.41435 -26.95514 -26.48664 -24.71623 -22.40357 -21.92675 -21.05286 -19.21610 -17.85929 -17.15886 -16.07993 -15.74643 -15.10317 -14.76050 -14.60586 -14.06275 -13.78949 -13.40036 -13.17878 -13.08293 -12.79081 -12.46772 -12.34133 -11.95922 -11.63516 -11.46745 -11.40901 -11.24170 -11.15211 -11.02176 -10.88644 -10.49962 -10.16734 -9.98562 -9.74699 -8.99019 -8.28457 -8.11546 -7.93894 -7.75282 -6.52417 -4.08329 1.51791 1.83595 3.02049 3.18202 3.22197 3.64148 4.05694 4.14442 4.38666 4.69364 4.97421 5.18812 5.30273 5.54480 5.64185 5.67174 5.73284 5.79914 5.88850 5.96634 5.99535 6.16129 6.30502 6.36129 6.42204 6.55129 6.59207 6.73564 6.81373 6.98199 6.98846 7.03357 7.17678 7.32131 7.36998 8.00598 8.16387 8.22455 8.88216 9.31815 9.62769 10.57018 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.008444 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.617408 B = 3315.175439 C = 4242.494476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.043 4.043 5 C -0.129 4.129 6 C 0.523 3.477 7 O -0.585 6.585 8 N -0.450 5.450 9 C -0.342 4.342 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.858 5.858 13 Si 0.883 3.117 14 H -0.270 1.270 15 H -0.292 1.292 16 H -0.266 1.266 17 C 0.120 3.880 18 C -0.129 4.129 19 C -0.151 4.151 20 C 0.144 3.856 21 O -0.490 6.490 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.276 0.724 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.390 0.610 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 -4.705 4.715 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.069 4.069 3 C -0.165 4.165 4 C -0.061 4.061 5 C -0.133 4.133 6 C 0.313 3.687 7 O -0.471 6.471 8 N -0.169 5.169 9 C -0.469 4.469 10 H 0.130 0.870 11 C -0.141 4.141 12 N -0.493 5.493 13 Si 0.713 3.287 14 H -0.197 1.197 15 H -0.219 1.219 16 H -0.191 1.191 17 C 0.017 3.983 18 C -0.186 4.186 19 C -0.209 4.209 20 C 0.098 3.902 21 O -0.301 6.301 22 C -0.186 4.186 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.170 0.830 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.246 0.754 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.721 -4.824 4.303 8.004 hybrid contribution 0.773 0.535 0.649 1.142 sum -3.948 -4.289 4.952 7.649 Atomic orbital electron populations 1.20772 0.91483 1.02335 1.02165 1.19798 0.95671 0.92819 0.98652 1.20989 0.94341 0.97186 1.04001 1.21793 0.93424 0.98811 0.92111 1.20434 0.94730 0.93212 1.04895 1.17916 0.86370 0.83429 0.80994 1.90670 1.67863 1.44050 1.44536 1.43679 1.04203 1.29329 1.39698 1.19255 1.04692 0.91288 1.31694 0.86959 1.25234 0.97590 0.95832 0.95482 1.69702 1.41815 1.10716 1.27087 0.86918 0.82444 0.76946 0.82398 1.19737 1.21937 1.19121 1.21373 0.82162 0.98511 0.96262 1.22247 0.96549 0.99560 1.00219 1.22021 0.99447 1.02220 0.97188 1.18437 0.89280 0.84589 0.97901 1.84672 1.76661 1.35273 1.33447 1.21030 0.92954 0.97957 1.06615 0.91274 0.91909 0.91606 0.86021 0.82972 0.91337 0.92917 0.91049 0.95817 0.90779 0.91485 0.93099 0.92588 0.75390 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.00 36.01 0.36 -0.89 16 2 C -0.07 -1.06 5.88 -104.56 -0.62 -1.67 16 3 C -0.15 -2.48 9.67 -39.63 -0.38 -2.86 16 4 C -0.04 -0.86 7.65 -39.18 -0.30 -1.16 16 5 C -0.13 -2.78 5.29 -104.85 -0.55 -3.33 16 6 C 0.52 12.44 7.00 -12.52 -0.09 12.35 16 7 O -0.58 -14.07 11.44 -9.78 -0.11 -14.18 16 8 N -0.45 -10.96 2.40 -108.94 -0.26 -11.22 16 9 C -0.34 -8.74 6.70 -14.99 -0.10 -8.84 16 10 H 0.11 3.05 6.25 -52.49 -0.33 2.72 16 11 C 0.07 1.70 5.14 -17.45 -0.09 1.61 16 12 N -0.86 -22.97 13.95 55.50 0.77 -22.20 16 13 Si 0.88 20.52 24.69 -169.99 -4.20 16.32 16 14 H -0.27 -6.07 6.67 56.52 0.38 -5.70 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.12 2.71 2.53 -67.94 -0.17 2.54 16 18 C -0.13 -2.70 7.57 37.16 0.28 -2.42 16 19 C -0.15 -3.13 9.18 37.16 0.34 -2.79 16 20 C 0.14 2.76 6.69 -38.68 -0.26 2.50 16 21 O -0.49 -9.05 12.32 -33.72 -0.42 -9.47 16 22 C -0.17 -2.71 9.62 -39.47 -0.38 -3.09 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.15 3.28 6.26 -52.49 -0.33 2.95 16 28 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 1.24 2.14 -51.93 -0.11 1.13 16 30 H 0.07 1.54 6.89 -51.92 -0.36 1.19 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.65 6.48 -51.93 -0.34 1.32 16 33 H 0.07 1.48 7.70 -51.93 -0.40 1.08 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.39 5.67 9.06 45.56 0.41 6.08 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -28.90 296.52 -5.68 -34.59 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.98 Total: 9.74 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.96 Total: -8.06 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.51 Total: -33.41 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.53 Total: -23.64 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.20 Total: 16.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.90 -5.68 -34.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.263 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds