Wall clock time and date at job start Mon Mar 30 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38559 * 119.79946 * 2 1 4 4 C 1.37780 * 120.30075 * 180.02562 * 3 2 1 5 5 C 1.39766 * 119.90309 * 359.97438 * 4 3 2 6 6 C 1.47431 * 120.19462 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00298 * 138.67768 * 6 5 4 8 8 N 1.34777 * 120.00059 * 318.66593 * 6 5 4 9 9 C 1.36909 * 119.99612 * 4.45466 * 8 6 5 10 10 H 1.07994 * 120.00375 * 326.53161 * 9 8 6 11 11 C 1.39027 * 119.99930 * 146.53061 * 9 8 6 12 12 N 1.31378 * 120.00218 * 162.22944 * 11 9 8 13 13 Si 1.86805 * 119.99870 * 342.22990 * 11 9 8 14 14 H 1.48503 * 109.47231 * 86.74591 * 13 11 9 15 15 H 1.48494 * 109.47106 * 206.74423 * 13 11 9 16 16 H 1.48497 * 109.47110 * 326.74297 * 13 11 9 17 17 C 1.46494 * 120.00381 * 184.44866 * 8 6 5 18 18 C 1.53001 * 109.47132 * 353.89034 * 17 8 6 19 19 C 1.52996 * 109.47137 * 113.89073 * 17 8 6 20 20 C 1.40201 * 119.60693 * 0.02562 * 5 4 3 21 21 O 1.35662 * 120.15247 * 179.72878 * 20 5 4 22 22 C 1.38080 * 119.79316 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47279 * 89.99673 * 1 2 3 24 24 H 1.08998 * 109.47352 * 209.99967 * 1 2 3 25 25 H 1.09001 * 109.46912 * 329.99966 * 1 2 3 26 26 H 1.07992 * 119.85083 * 359.97438 * 3 2 1 27 27 H 1.08000 * 120.04435 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99913 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47291 * 233.89073 * 17 8 6 30 30 H 1.09009 * 109.46598 * 66.68776 * 18 17 8 31 31 H 1.08992 * 109.47405 * 186.68287 * 18 17 8 32 32 H 1.08997 * 109.47301 * 306.69160 * 18 17 8 33 33 H 1.09004 * 109.47028 * 65.04719 * 19 17 8 34 34 H 1.09003 * 109.47641 * 185.04795 * 19 17 8 35 35 H 1.09000 * 109.47261 * 305.04859 * 19 17 8 36 36 H 0.96701 * 114.00484 * 89.99498 * 21 20 5 37 37 H 1.07994 * 119.95917 * 0.04245 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5733 1.2144 -0.0005 5 6 4.2807 0.0090 -0.0005 6 6 5.7550 0.0144 -0.0017 7 8 6.3666 -0.7741 0.6937 8 7 6.4251 0.8929 -0.7735 9 6 5.7395 1.8398 -1.4861 10 1 4.7620 1.6127 -1.8849 11 6 6.3019 3.0938 -1.6963 12 7 5.8345 3.8726 -2.6455 13 14 7.7222 3.6712 -0.6291 14 1 9.0035 3.1971 -1.2113 15 1 7.7249 5.1550 -0.5691 16 1 7.5674 3.1207 0.7413 17 6 7.8869 0.8347 -0.8498 18 6 8.4088 -0.2013 0.1478 19 6 8.3082 0.4368 -2.2657 20 6 3.5799 -1.2053 -0.0005 21 8 4.2553 -2.3819 -0.0061 22 6 2.1931 -1.1983 0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6499 2.1343 -0.0004 27 1 4.1059 2.1540 -0.0009 28 1 6.2271 4.7473 -2.7924 29 1 8.3025 1.8130 -0.6084 30 1 8.0901 -1.1967 -0.1620 31 1 9.4976 -0.1613 0.1770 32 1 8.0104 0.0156 1.1389 33 1 8.0145 1.2192 -2.9656 34 1 9.3898 0.3061 -2.2998 35 1 7.8204 -0.4984 -2.5407 36 1 4.4549 -2.7251 0.8757 37 1 1.6491 -2.1312 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:52 Heat of formation + Delta-G solvation = -40.622793 kcal Electronic energy + Delta-G solvation = -20697.909998 eV Core-core repulsion = 17634.067739 eV Total energy + Delta-G solvation = -3063.842259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61375 -40.02068 -37.83643 -37.01283 -34.75898 -33.82517 -32.33238 -30.79659 -28.28134 -28.17646 -26.57410 -23.97240 -23.38168 -22.60527 -20.96778 -19.61911 -18.59524 -17.93031 -17.38919 -16.62198 -16.40981 -16.17328 -15.77385 -15.46299 -14.95249 -14.67658 -14.41946 -14.33527 -14.18865 -13.72216 -13.36632 -13.31951 -13.14893 -12.98232 -12.79195 -12.74380 -12.50425 -12.30603 -12.22244 -11.98373 -11.64678 -11.41771 -10.87554 -9.88662 -9.74287 -9.56084 -9.40593 -8.50373 -6.07979 0.07505 0.43726 1.15728 1.27875 1.36001 1.94096 2.14275 2.50075 2.73593 3.09235 3.34124 3.85403 3.96813 4.05773 4.09567 4.20437 4.25779 4.41938 4.51928 4.72148 4.75807 4.78193 4.88745 4.91136 4.95438 5.01457 5.11543 5.26127 5.28359 5.41049 5.42338 5.51619 5.56729 5.65687 5.97209 6.05177 6.26088 6.85161 6.92956 7.40637 7.74741 8.62556 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.008444 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.617408 B = 3315.175439 C = 4242.494476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.054 4.054 3 C -0.150 4.150 4 C -0.057 4.057 5 C -0.172 4.172 6 C 0.517 3.483 7 O -0.593 6.593 8 N -0.465 5.465 9 C -0.332 4.332 10 H 0.088 0.912 11 C 0.035 3.965 12 N -0.894 5.894 13 Si 0.926 3.074 14 H -0.254 1.254 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.106 3.894 18 C -0.116 4.116 19 C -0.143 4.143 20 C 0.136 3.864 21 O -0.502 6.502 22 C -0.162 4.162 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.280 0.720 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.404 0.596 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -5.597 5.250 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.054 4.054 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.175 4.175 6 C 0.309 3.691 7 O -0.480 6.480 8 N -0.185 5.185 9 C -0.460 4.460 10 H 0.105 0.895 11 C -0.170 4.170 12 N -0.531 5.531 13 Si 0.754 3.246 14 H -0.180 1.180 15 H -0.214 1.214 16 H -0.203 1.203 17 C 0.003 3.997 18 C -0.173 4.173 19 C -0.201 4.201 20 C 0.090 3.910 21 O -0.314 6.314 22 C -0.181 4.181 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.263 0.737 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.700 -5.730 4.849 9.426 hybrid contribution 0.953 0.704 0.535 1.300 sum -4.747 -5.026 5.384 8.763 Atomic orbital electron populations 1.20882 0.87821 1.04339 1.03512 1.20305 0.98132 0.91607 0.95377 1.21263 0.93060 0.99181 1.03284 1.21606 0.94948 0.97342 0.93725 1.20471 0.93646 0.94877 1.08495 1.18412 0.87674 0.82741 0.80320 1.90642 1.68622 1.44110 1.44664 1.43797 1.05025 1.29505 1.40140 1.18994 1.04005 0.91845 1.31107 0.89460 1.25636 0.99472 0.95740 0.96116 1.69754 1.43492 1.11309 1.28534 0.86218 0.81158 0.76687 0.80488 1.17992 1.21409 1.20321 1.21614 0.81394 0.98829 0.97832 1.22064 0.98427 0.98288 0.98502 1.21952 1.01563 1.01110 0.95434 1.18652 0.90492 0.83903 0.97911 1.84620 1.76946 1.34924 1.34913 1.21371 0.91673 0.99770 1.05240 0.89993 0.89668 0.90002 0.83802 0.85642 0.91007 0.93429 0.92021 0.92498 0.92624 0.93360 0.89691 0.93093 0.73703 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.00 71.24 0.71 -1.26 16 2 C -0.05 -1.49 5.88 -19.83 -0.12 -1.61 16 3 C -0.15 -4.90 9.67 22.24 0.22 -4.69 16 4 C -0.06 -2.37 7.65 22.53 0.17 -2.20 16 5 C -0.17 -7.53 5.29 -20.01 -0.11 -7.64 16 6 C 0.52 25.26 7.00 86.66 0.61 25.86 16 7 O -0.59 -29.00 11.44 10.28 0.12 -28.88 16 8 N -0.46 -23.16 2.40 -616.83 -1.48 -24.64 16 9 C -0.33 -17.56 6.70 84.09 0.56 -16.99 16 10 H 0.09 4.99 6.25 -2.91 -0.02 4.97 16 11 C 0.03 1.82 5.14 84.95 0.44 2.26 16 12 N -0.89 -49.00 13.95 21.68 0.30 -48.70 16 13 Si 0.93 42.50 24.69 68.60 1.69 44.20 16 14 H -0.25 -10.90 6.67 99.48 0.66 -10.23 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 17 C 0.11 4.76 2.53 44.99 0.11 4.87 16 18 C -0.12 -4.76 7.57 71.98 0.54 -4.21 16 19 C -0.14 -5.81 9.18 71.98 0.66 -5.15 16 20 C 0.14 5.15 6.69 22.85 0.15 5.30 16 21 O -0.50 -18.21 12.32 -75.41 -0.93 -19.14 16 22 C -0.16 -4.86 9.62 22.34 0.21 -4.65 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 25 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 26 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.13 5.75 6.26 -2.91 -0.02 5.73 16 28 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.05 2.20 2.14 -2.39 -0.01 2.20 16 30 H 0.06 2.63 6.89 -2.38 -0.02 2.61 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 2.47 6.48 -2.39 -0.02 2.46 16 33 H 0.05 2.12 7.70 -2.38 -0.02 2.10 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.40 11.50 9.06 -74.06 -0.67 10.83 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -63.68 296.52 4.26 -59.42 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.38 Total: 27.84 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.17 Total: -10.10 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.18 Total: -73.34 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.81 Total: -48.02 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.69 Total: 44.20 kcal Total: -63.68 4.26 -59.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds