Wall clock time and date at job start Mon Mar 30 2020 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38123 * 119.95538 * 2 1 4 4 C 1.38522 * 120.40023 * 179.97438 * 3 2 1 5 5 C 1.37820 * 120.30481 * 0.23241 * 4 3 2 6 6 C 1.39733 * 119.89773 * 359.49443 * 5 4 3 7 7 C 1.47431 * 120.19054 * 180.25453 * 6 5 4 8 8 O 1.21628 * 119.99757 * 130.18960 * 7 6 5 9 9 N 1.34769 * 120.00255 * 310.18392 * 7 6 5 10 10 C 1.36903 * 120.00091 * 2.31549 * 9 7 6 11 11 H 1.07996 * 119.99766 * 309.18428 * 10 9 7 12 12 C 1.39025 * 120.00096 * 129.17870 * 10 9 7 13 13 N 1.31376 * 119.99883 * 170.10572 * 12 10 9 14 14 Si 1.86802 * 120.00025 * 350.11375 * 12 10 9 15 15 H 1.48502 * 109.47147 * 90.23315 * 14 12 10 16 16 H 1.48493 * 109.46952 * 210.23275 * 14 12 10 17 17 H 1.48498 * 109.46846 * 330.23687 * 14 12 10 18 18 C 1.46507 * 120.00157 * 182.31454 * 9 7 6 19 19 C 1.53003 * 109.47023 * 352.32317 * 18 9 7 20 20 C 1.52994 * 109.47008 * 112.32491 * 18 9 7 21 21 C 1.38645 * 119.95251 * 179.97438 * 2 1 3 22 22 O 1.35651 * 120.15370 * 0.02562 * 21 2 1 23 23 H 1.08991 * 109.47057 * 90.00042 * 1 2 3 24 24 H 1.09000 * 109.47429 * 210.00664 * 1 2 3 25 25 H 1.09007 * 109.47085 * 330.00557 * 1 2 3 26 26 H 1.07995 * 119.80132 * 359.97171 * 3 2 1 27 27 H 1.07995 * 119.84780 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.04684 * 179.74075 * 5 4 3 29 29 H 0.97001 * 120.00273 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.46791 * 232.32568 * 18 9 7 31 31 H 1.09004 * 109.46847 * 65.59638 * 19 18 9 32 32 H 1.09000 * 109.46997 * 185.59470 * 19 18 9 33 33 H 1.08994 * 109.47266 * 305.60213 * 19 18 9 34 34 H 1.08996 * 109.47586 * 65.08369 * 20 18 9 35 35 H 1.09005 * 109.46839 * 185.08282 * 20 18 9 36 36 H 1.08997 * 109.47139 * 305.07785 * 20 18 9 37 37 H 0.96701 * 114.00608 * 89.99642 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1967 0.0000 4 6 3.5818 1.2075 0.0005 5 6 4.2865 0.0230 -0.0038 6 6 3.6016 -1.1949 0.0020 7 6 4.3489 -2.4658 0.0031 8 8 4.0739 -3.3322 0.8112 9 7 5.3367 -2.6675 -0.8912 10 6 5.6779 -1.6745 -1.7698 11 1 4.9141 -1.1885 -2.3586 12 6 7.0077 -1.2917 -1.9038 13 7 7.3637 -0.4835 -2.8764 14 14 8.2882 -1.9268 -0.7011 15 1 8.8652 -3.1946 -1.2161 16 1 9.3671 -0.9180 -0.5485 17 1 7.6502 -2.1728 0.6170 18 6 6.0453 -3.9494 -0.9234 19 6 5.6098 -4.8029 0.2694 20 6 5.7130 -4.6832 -2.2241 21 6 2.1992 -1.2013 0.0005 22 8 1.5231 -2.3773 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6527 2.1297 -0.0005 27 1 4.1120 2.1483 0.0001 28 1 5.3664 0.0363 -0.0075 29 1 8.2916 -0.2166 -2.9702 30 1 7.1195 -3.7721 -0.8704 31 1 4.5565 -5.0634 0.1645 32 1 6.2078 -5.7136 0.3021 33 1 5.7546 -4.2398 1.1913 34 1 6.1036 -4.1180 -3.0702 35 1 6.1671 -5.6741 -2.2083 36 1 4.6317 -4.7806 -2.3202 37 1 1.3273 -2.7185 -0.8828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080213081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:54 Heat of formation + Delta-G solvation = -31.863773 kcal Electronic energy + Delta-G solvation = -20816.864428 eV Core-core repulsion = 17753.401988 eV Total energy + Delta-G solvation = -3063.462440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95704 -38.51543 -36.15777 -35.15249 -33.02556 -32.15492 -30.99869 -29.26802 -26.49283 -26.39122 -24.83150 -23.15114 -21.18977 -21.12499 -19.04617 -17.85768 -17.30810 -16.00837 -15.53845 -15.29171 -14.90554 -14.41784 -14.11612 -13.78313 -13.36627 -13.13248 -12.96596 -12.72391 -12.49746 -12.17145 -11.84851 -11.70071 -11.53802 -11.40544 -11.32997 -11.26888 -11.05057 -10.86443 -10.46081 -10.09866 -10.02617 -9.86933 -9.05025 -8.26405 -8.06668 -7.98738 -7.59198 -6.48670 -4.24980 1.59729 1.80685 3.03599 3.17773 3.25753 3.64812 4.07123 4.16459 4.38953 4.71296 4.89261 5.19817 5.32448 5.57617 5.66379 5.71196 5.78605 5.87115 5.96148 6.00198 6.04844 6.12261 6.28787 6.32751 6.43034 6.55083 6.58031 6.72385 6.85476 6.94819 6.97942 7.04431 7.18432 7.32397 7.47236 8.05783 8.11753 8.23876 8.93430 9.29817 9.64675 10.60011 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.008809 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.424202 B = 3177.766131 C = 3983.876914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.134 4.134 3 C -0.101 4.101 4 C -0.140 4.140 5 C -0.040 4.040 6 C -0.112 4.112 7 C 0.529 3.471 8 O -0.567 6.567 9 N -0.461 5.461 10 C -0.337 4.337 11 H 0.100 0.900 12 C 0.072 3.928 13 N -0.864 5.864 14 Si 0.874 3.126 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.261 1.261 18 C 0.123 3.877 19 C -0.131 4.131 20 C -0.148 4.148 21 C 0.135 3.865 22 O -0.484 6.484 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.138 0.862 29 H 0.275 0.725 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 0.797 2.154 7.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.059 4.059 6 C -0.116 4.116 7 C 0.319 3.681 8 O -0.450 6.450 9 N -0.182 5.182 10 C -0.465 4.465 11 H 0.117 0.883 12 C -0.136 4.136 13 N -0.499 5.499 14 Si 0.702 3.298 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.185 1.185 18 C 0.020 3.980 19 C -0.188 4.188 20 C -0.206 4.206 21 C 0.089 3.911 22 O -0.293 6.293 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.823 0.502 3.043 7.488 hybrid contribution 0.996 -0.154 -0.304 1.052 sum -5.828 0.347 2.739 6.449 Atomic orbital electron populations 1.20594 0.91141 1.02607 1.01750 1.19975 0.96205 0.92446 1.04793 1.20895 0.94222 0.96602 1.00247 1.21050 0.93884 0.98220 1.02710 1.21352 1.01020 0.90310 0.93215 1.20355 0.92729 0.95190 1.03299 1.18321 0.82536 0.86173 0.81110 1.90741 1.69901 1.44129 1.40248 1.43646 1.32225 1.11720 1.30644 1.18929 0.94412 1.13865 1.19256 0.88288 1.25446 0.97750 0.94799 0.95556 1.69650 1.18675 1.32880 1.28720 0.86928 0.81419 0.78346 0.83126 1.19777 1.21448 1.18510 1.21298 0.95754 0.85170 0.95790 1.22261 1.01613 0.97065 0.97865 1.22004 1.01308 0.98830 0.98471 1.18217 0.88389 0.84889 0.99612 1.84756 1.75932 1.36057 1.32524 0.91867 0.91220 0.91985 0.86323 0.86010 0.84428 0.91435 0.92833 0.90590 0.95769 0.91660 0.91640 0.93181 0.92968 0.76301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.79 36.00 0.35 -0.96 16 2 C -0.13 -2.17 5.89 -104.52 -0.62 -2.78 16 3 C -0.10 -1.56 9.68 -39.52 -0.38 -1.94 16 4 C -0.14 -2.39 10.02 -39.63 -0.40 -2.78 16 5 C -0.04 -0.82 8.29 -39.18 -0.32 -1.14 16 6 C -0.11 -2.42 5.10 -104.84 -0.53 -2.95 16 7 C 0.53 12.54 6.79 -12.52 -0.08 12.45 16 8 O -0.57 -14.14 11.85 -2.82 -0.03 -14.17 16 9 N -0.46 -10.93 2.08 -108.93 -0.23 -11.16 16 10 C -0.34 -8.45 6.41 -15.00 -0.10 -8.55 16 11 H 0.10 2.68 7.78 -52.49 -0.41 2.28 16 12 C 0.07 1.84 5.40 -17.45 -0.09 1.75 16 13 N -0.86 -23.06 13.95 55.50 0.77 -22.28 16 14 Si 0.87 20.37 24.98 -169.99 -4.25 16.12 16 15 H -0.27 -6.16 6.79 56.52 0.38 -5.78 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.12 2.70 2.78 -67.93 -0.19 2.52 16 19 C -0.13 -2.73 7.57 37.16 0.28 -2.45 16 20 C -0.15 -2.88 9.21 37.15 0.34 -2.53 16 21 C 0.13 2.57 6.67 -38.68 -0.26 2.31 16 22 O -0.48 -8.73 11.63 -26.73 -0.31 -9.04 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 25 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.14 2.99 7.05 -52.49 -0.37 2.62 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.23 3.37 -51.93 -0.17 1.06 16 31 H 0.08 1.63 6.64 -51.93 -0.34 1.29 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.48 6.75 -51.93 -0.35 1.13 16 34 H 0.06 1.34 7.98 -51.93 -0.41 0.93 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.38 5.33 9.06 45.56 0.41 5.74 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -29.25 300.31 -5.67 -34.91 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.15 Total: 8.16 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.00 Total: -7.07 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.55 Total: -33.44 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.34 Total: -23.21 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.25 Total: 16.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.25 -5.67 -34.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.050 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds