Wall clock time and date at job start Mon Mar 30 2020 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38123 * 119.95538 * 2 1 4 4 C 1.38522 * 120.40023 * 179.97438 * 3 2 1 5 5 C 1.37820 * 120.30481 * 0.23241 * 4 3 2 6 6 C 1.39733 * 119.89773 * 359.49443 * 5 4 3 7 7 C 1.47431 * 120.19054 * 180.25453 * 6 5 4 8 8 O 1.21628 * 119.99757 * 130.18960 * 7 6 5 9 9 N 1.34769 * 120.00255 * 310.18392 * 7 6 5 10 10 C 1.36903 * 120.00091 * 2.31549 * 9 7 6 11 11 H 1.07996 * 119.99766 * 309.18428 * 10 9 7 12 12 C 1.39025 * 120.00096 * 129.17870 * 10 9 7 13 13 N 1.31376 * 119.99883 * 170.10572 * 12 10 9 14 14 Si 1.86802 * 120.00025 * 350.11375 * 12 10 9 15 15 H 1.48502 * 109.47147 * 90.23315 * 14 12 10 16 16 H 1.48493 * 109.46952 * 210.23275 * 14 12 10 17 17 H 1.48498 * 109.46846 * 330.23687 * 14 12 10 18 18 C 1.46507 * 120.00157 * 182.31454 * 9 7 6 19 19 C 1.53003 * 109.47023 * 352.32317 * 18 9 7 20 20 C 1.52994 * 109.47008 * 112.32491 * 18 9 7 21 21 C 1.38645 * 119.95251 * 179.97438 * 2 1 3 22 22 O 1.35651 * 120.15370 * 0.02562 * 21 2 1 23 23 H 1.08991 * 109.47057 * 90.00042 * 1 2 3 24 24 H 1.09000 * 109.47429 * 210.00664 * 1 2 3 25 25 H 1.09007 * 109.47085 * 330.00557 * 1 2 3 26 26 H 1.07995 * 119.80132 * 359.97171 * 3 2 1 27 27 H 1.07995 * 119.84780 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.04684 * 179.74075 * 5 4 3 29 29 H 0.97001 * 120.00273 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.46791 * 232.32568 * 18 9 7 31 31 H 1.09004 * 109.46847 * 65.59638 * 19 18 9 32 32 H 1.09000 * 109.46997 * 185.59470 * 19 18 9 33 33 H 1.08994 * 109.47266 * 305.60213 * 19 18 9 34 34 H 1.08996 * 109.47586 * 65.08369 * 20 18 9 35 35 H 1.09005 * 109.46839 * 185.08282 * 20 18 9 36 36 H 1.08997 * 109.47139 * 305.07785 * 20 18 9 37 37 H 0.96701 * 114.00608 * 89.99642 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1967 0.0000 4 6 3.5818 1.2075 0.0005 5 6 4.2865 0.0230 -0.0038 6 6 3.6016 -1.1949 0.0020 7 6 4.3489 -2.4658 0.0031 8 8 4.0739 -3.3322 0.8112 9 7 5.3367 -2.6675 -0.8912 10 6 5.6779 -1.6745 -1.7698 11 1 4.9141 -1.1885 -2.3586 12 6 7.0077 -1.2917 -1.9038 13 7 7.3637 -0.4835 -2.8764 14 14 8.2882 -1.9268 -0.7011 15 1 8.8652 -3.1946 -1.2161 16 1 9.3671 -0.9180 -0.5485 17 1 7.6502 -2.1728 0.6170 18 6 6.0453 -3.9494 -0.9234 19 6 5.6098 -4.8029 0.2694 20 6 5.7130 -4.6832 -2.2241 21 6 2.1992 -1.2013 0.0005 22 8 1.5231 -2.3773 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6527 2.1297 -0.0005 27 1 4.1120 2.1483 0.0001 28 1 5.3664 0.0363 -0.0075 29 1 8.2916 -0.2166 -2.9702 30 1 7.1195 -3.7721 -0.8704 31 1 4.5565 -5.0634 0.1645 32 1 6.2078 -5.7136 0.3021 33 1 5.7546 -4.2398 1.1913 34 1 6.1036 -4.1180 -3.0702 35 1 6.1671 -5.6741 -2.2083 36 1 4.6317 -4.7806 -2.3202 37 1 1.3273 -2.7185 -0.8828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080213081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:54 Heat of formation + Delta-G solvation = -50.443687 kcal Electronic energy + Delta-G solvation = -20817.670113 eV Core-core repulsion = 17753.401988 eV Total energy + Delta-G solvation = -3064.268125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58780 -40.08154 -37.56881 -36.98733 -34.73514 -33.79161 -32.61564 -30.73436 -28.14613 -27.60754 -26.72564 -24.74560 -22.78102 -22.56296 -20.85208 -19.40966 -18.91183 -17.86770 -17.09610 -16.75946 -16.51531 -16.15074 -15.80186 -15.36348 -15.01749 -14.76218 -14.38651 -14.14024 -14.07980 -13.68156 -13.34866 -13.14997 -13.12954 -13.08439 -12.91903 -12.79941 -12.62251 -12.24089 -12.18657 -12.01809 -11.70370 -11.41008 -10.98159 -9.91363 -9.60728 -9.51177 -9.37198 -8.48060 -6.24877 0.15343 0.42530 1.15490 1.26584 1.36193 1.92664 2.15516 2.55729 2.76002 2.97127 3.36308 3.91293 3.99355 4.05006 4.15269 4.23144 4.32273 4.44790 4.57981 4.75226 4.76387 4.82741 4.87217 4.93780 4.95036 5.00156 5.04093 5.31132 5.34194 5.45198 5.50878 5.54443 5.61539 5.63227 5.98232 6.10440 6.24616 6.82372 6.96820 7.39322 7.76563 8.64147 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.008809 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.424202 B = 3177.766131 C = 3983.876914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.130 4.130 3 C -0.088 4.088 4 C -0.139 4.139 5 C -0.064 4.064 6 C -0.152 4.152 7 C 0.525 3.475 8 O -0.586 6.586 9 N -0.469 5.469 10 C -0.319 4.319 11 H 0.072 0.928 12 C 0.043 3.957 13 N -0.897 5.897 14 Si 0.916 3.084 15 H -0.257 1.257 16 H -0.282 1.282 17 H -0.277 1.277 18 C 0.109 3.891 19 C -0.118 4.118 20 C -0.139 4.139 21 C 0.123 3.877 22 O -0.494 6.494 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.147 0.853 28 H 0.111 0.889 29 H 0.279 0.721 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 1.276 2.329 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.130 4.130 3 C -0.106 4.106 4 C -0.157 4.157 5 C -0.083 4.083 6 C -0.155 4.155 7 C 0.315 3.685 8 O -0.471 6.471 9 N -0.191 5.191 10 C -0.447 4.447 11 H 0.090 0.910 12 C -0.162 4.162 13 N -0.534 5.534 14 Si 0.743 3.257 15 H -0.183 1.183 16 H -0.208 1.208 17 H -0.202 1.202 18 C 0.007 3.993 19 C -0.175 4.175 20 C -0.197 4.197 21 C 0.077 3.923 22 O -0.305 6.305 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.181 0.819 27 H 0.164 0.836 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -8.101 0.967 3.202 8.765 hybrid contribution 1.264 -0.274 -0.328 1.334 sum -6.837 0.693 2.874 7.449 Atomic orbital electron populations 1.20664 0.88089 1.03690 1.03219 1.20435 0.98355 0.91468 1.02785 1.21387 0.93532 0.98113 0.97524 1.21350 0.95023 0.97814 1.01548 1.21229 0.99972 0.91569 0.95495 1.20417 0.94098 0.94458 1.06567 1.18745 0.82307 0.86880 0.80520 1.90712 1.70422 1.45159 1.40825 1.43749 1.32618 1.12218 1.30547 1.18572 0.93684 1.14053 1.18422 0.91040 1.25804 0.98907 0.95065 0.96412 1.69701 1.19264 1.34355 1.30083 0.86260 0.79903 0.78639 0.80855 1.18305 1.20849 1.20186 1.21527 0.95196 0.84906 0.97674 1.22071 1.01650 0.97727 0.96056 1.21923 1.01560 0.99953 0.96240 1.18440 0.87671 0.86233 0.99913 1.84700 1.75584 1.36222 1.34003 0.90054 0.91728 0.89349 0.81868 0.83564 0.87135 0.91082 0.93594 0.91477 0.92413 0.94145 0.93158 0.89833 0.92904 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 9.79 71.23 0.70 -1.44 16 2 C -0.13 -3.89 5.89 -19.80 -0.12 -4.01 16 3 C -0.09 -2.41 9.68 22.31 0.22 -2.19 16 4 C -0.14 -4.54 10.02 22.24 0.22 -4.32 16 5 C -0.06 -2.65 8.29 22.53 0.19 -2.47 16 6 C -0.15 -6.70 5.10 -20.01 -0.10 -6.81 16 7 C 0.52 25.62 6.79 86.67 0.59 26.21 16 8 O -0.59 -30.00 11.85 3.60 0.04 -29.95 16 9 N -0.47 -22.82 2.08 -616.81 -1.28 -24.11 16 10 C -0.32 -16.52 6.41 84.09 0.54 -15.98 16 11 H 0.07 4.06 7.78 -2.91 -0.02 4.04 16 12 C 0.04 2.23 5.40 84.95 0.46 2.69 16 13 N -0.90 -48.74 13.95 21.68 0.30 -48.43 16 14 Si 0.92 42.42 24.98 68.60 1.71 44.13 16 15 H -0.26 -11.26 6.79 99.48 0.67 -10.58 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 C 0.11 4.81 2.78 44.99 0.13 4.93 16 19 C -0.12 -4.86 7.57 71.98 0.54 -4.32 16 20 C -0.14 -5.26 9.21 71.98 0.66 -4.60 16 21 C 0.12 4.65 6.67 22.85 0.15 4.80 16 22 O -0.49 -17.67 11.63 -81.95 -0.95 -18.62 16 23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.47 7.53 -2.39 -0.02 1.46 16 25 H 0.09 1.46 8.08 -2.38 -0.02 1.44 16 26 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 28 H 0.11 5.08 7.05 -2.91 -0.02 5.06 16 29 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.05 2.09 3.37 -2.39 -0.01 2.08 16 31 H 0.07 2.87 6.64 -2.39 -0.02 2.85 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.84 6.75 -2.39 -0.02 1.82 16 34 H 0.05 2.04 7.98 -2.39 -0.02 2.02 16 35 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.40 10.97 9.06 -74.06 -0.67 10.30 16 Total: -1.00 -64.72 300.31 4.38 -60.34 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.38 Total: 24.14 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 4.18 Total: -7.49 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -0.98 Total: -72.54 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.91 Total: -48.57 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.71 Total: 44.13 kcal Total: -64.72 4.38 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080213081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.899 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds