Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37703 * 119.95473 * 2 1 4 4 C 1.39782 * 119.90272 * 179.97438 * 3 2 1 5 5 C 1.47493 * 120.09470 * 179.97438 * 4 3 2 6 6 O 1.21619 * 119.99841 * 0.02562 * 5 4 3 7 7 N 1.34767 * 120.00190 * 180.02562 * 5 4 3 8 8 C 1.36899 * 120.00218 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99976 * 0.02562 * 8 7 5 10 10 C 1.39028 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31382 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99878 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47142 * 90.00294 * 12 10 8 14 14 H 1.48504 * 109.47194 * 210.00448 * 12 10 8 15 15 H 1.48501 * 109.47427 * 330.00052 * 12 10 8 16 16 C 1.39824 * 119.81206 * 359.75284 * 4 3 2 17 17 C 1.37661 * 119.90353 * 0.47882 * 16 4 3 18 18 C 1.38999 * 119.94728 * 179.97438 * 2 1 3 19 19 O 1.35711 * 119.90515 * 359.97438 * 18 2 1 20 20 C 1.42906 * 116.99847 * 174.59673 * 19 18 2 21 21 C 1.52998 * 109.46721 * 84.78243 * 20 19 18 22 22 C 1.52992 * 109.47118 * 204.78367 * 20 19 18 23 23 H 1.08997 * 109.46808 * 270.02438 * 1 2 3 24 24 H 1.08999 * 109.46632 * 30.02077 * 1 2 3 25 25 H 1.08995 * 109.47330 * 150.02296 * 1 2 3 26 26 H 1.07998 * 120.05161 * 359.97438 * 3 2 1 27 27 H 0.97001 * 120.00108 * 359.97438 * 7 5 4 28 28 H 0.96996 * 119.99282 * 180.02562 * 11 10 8 29 29 H 1.07996 * 120.04473 * 180.26730 * 16 4 3 30 30 H 1.08001 * 119.95272 * 179.79320 * 17 16 4 31 31 H 1.09001 * 109.46803 * 324.79154 * 20 19 18 32 32 H 1.09000 * 109.46984 * 179.97438 * 21 20 19 33 33 H 1.09000 * 109.47836 * 300.00027 * 21 20 19 34 34 H 1.09006 * 109.47162 * 60.00667 * 21 20 19 35 35 H 1.09000 * 109.46934 * 60.00227 * 22 20 19 36 36 H 1.09000 * 109.47125 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47266 * 299.99805 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1931 0.0000 4 6 3.5924 1.1918 0.0005 5 6 4.3332 2.4673 0.0000 6 8 3.7277 3.5220 -0.0005 7 7 5.6808 2.4638 0.0000 8 6 6.3684 3.6477 0.0000 9 1 5.8307 4.5844 0.0004 10 6 7.7586 3.6442 0.0005 11 7 8.4126 2.5047 0.0005 12 14 8.6967 5.2596 0.0012 13 1 8.9448 5.6873 1.4015 14 1 9.9941 5.0790 -0.6984 15 1 7.8970 6.2967 -0.6989 16 6 4.2865 -0.0220 0.0063 17 6 3.5912 -1.2101 0.0015 18 6 2.2009 -1.2044 0.0005 19 8 1.5193 -2.3779 0.0016 20 6 2.2897 -3.5757 -0.1178 21 6 2.7920 -3.9987 1.2640 22 6 1.4173 -4.6866 -0.7055 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 1.6547 2.1284 -0.0004 27 1 6.1637 1.6226 0.0007 28 1 9.3826 2.5023 0.0013 29 1 5.3664 -0.0273 0.0111 30 1 4.1265 -2.1481 0.0025 31 1 3.1409 -3.3962 -0.7745 32 1 3.3792 -4.9125 1.1731 33 1 3.4136 -3.2072 1.6828 34 1 1.9408 -4.1782 1.9209 35 1 1.0594 -4.3852 -1.6900 36 1 2.0047 -5.6003 -0.7961 37 1 0.5661 -4.8661 -0.0487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082546463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -65.458640 kcal Electronic energy + Delta-G solvation = -19328.695889 eV Core-core repulsion = 16263.776666 eV Total energy + Delta-G solvation = -3064.919222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26762 -38.52052 -36.83079 -34.04608 -33.45671 -32.30451 -31.20877 -29.70630 -27.45887 -26.63575 -25.14184 -23.25598 -22.06036 -20.64233 -19.18929 -18.24172 -17.83168 -16.31014 -15.81156 -15.48572 -14.75126 -14.59205 -14.17290 -13.80598 -13.76369 -13.45388 -13.16712 -12.93276 -12.82602 -12.63721 -12.47922 -12.14537 -12.02361 -11.70402 -11.54586 -11.42361 -11.15016 -11.10548 -10.62992 -10.50450 -10.40066 -10.22081 -9.58836 -8.52753 -8.47607 -8.06599 -7.76772 -6.52942 -3.86608 1.46658 1.67003 3.15236 3.22525 3.22935 3.29090 3.67351 4.11479 4.51638 4.61249 4.73885 4.89074 4.91699 5.01307 5.11497 5.32033 5.32210 5.34632 5.52396 5.56242 5.58835 5.67273 5.78207 5.84928 5.85553 5.90275 5.99631 6.10842 6.18704 6.43324 6.61555 6.72393 6.94599 7.06721 7.46012 7.59424 7.99772 8.53984 9.09289 9.46066 10.01345 10.64401 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.004316 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.041195 B = 6486.526446 C = 7274.305028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.128 4.128 3 C -0.040 4.040 4 C -0.127 4.127 5 C 0.472 3.528 6 O -0.599 6.599 7 N -0.547 5.547 8 C -0.295 4.295 9 H 0.107 0.893 10 C 0.023 3.977 11 N -0.893 5.893 12 Si 0.934 3.066 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.068 4.068 17 C -0.210 4.210 18 C 0.127 3.873 19 O -0.309 6.309 20 C 0.075 3.925 21 C -0.181 4.181 22 C -0.147 4.147 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.393 0.607 28 H 0.275 0.725 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -14.473 -0.092 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.131 4.131 5 C 0.260 3.740 6 O -0.486 6.486 7 N -0.181 5.181 8 C -0.425 4.425 9 H 0.125 0.875 10 C -0.180 4.180 11 N -0.534 5.534 12 Si 0.761 3.239 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.088 4.088 17 C -0.229 4.229 18 C 0.082 3.918 19 O -0.223 6.223 20 C 0.019 3.981 21 C -0.238 4.238 22 C -0.204 4.204 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.228 0.772 28 H 0.084 0.916 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.108 -13.835 -0.084 17.134 hybrid contribution 1.283 0.077 0.050 1.286 sum -8.825 -13.758 -0.034 16.345 Atomic orbital electron populations 1.20548 0.90704 1.02381 1.01949 1.19131 0.96285 0.90058 1.07374 1.20948 0.92961 0.97030 0.95012 1.20238 0.94168 0.93976 1.04727 1.17663 0.82722 0.87984 0.85625 1.90591 1.68195 1.32279 1.57546 1.41876 1.04497 1.09626 1.62102 1.19830 0.88894 0.87006 1.46733 0.87495 1.25360 0.96728 0.98970 0.96955 1.69597 1.09060 1.25634 1.49062 0.85788 0.78510 0.81097 0.78548 1.20212 1.20771 1.19195 1.21200 1.00026 0.91243 0.96329 1.21097 0.92780 0.99068 1.09945 1.18874 0.90276 0.85276 0.97419 1.86031 1.36107 1.12195 1.87955 1.22406 0.94728 0.83750 0.97263 1.22389 1.02123 1.02244 0.97050 1.21836 1.00365 0.96653 1.01559 0.91760 0.91750 0.91549 0.84456 0.77216 0.91553 0.85322 0.85417 0.90804 0.91207 0.91506 0.91586 0.91720 0.90714 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.78 36.01 0.35 -0.93 16 2 C -0.13 -2.05 5.89 -104.53 -0.62 -2.67 16 3 C -0.04 -0.75 9.23 -39.20 -0.36 -1.11 16 4 C -0.13 -2.65 5.88 -104.96 -0.62 -3.27 16 5 C 0.47 12.03 7.71 -12.49 -0.10 11.93 16 6 O -0.60 -17.12 15.91 5.26 0.08 -17.04 16 7 N -0.55 -14.36 5.23 -11.94 -0.06 -14.43 16 8 C -0.29 -8.30 9.68 -15.00 -0.15 -8.45 16 9 H 0.11 3.13 7.15 -52.48 -0.38 2.76 16 10 C 0.02 0.60 5.50 -17.45 -0.10 0.51 16 11 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 12 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 C -0.07 -1.24 9.53 -39.20 -0.37 -1.61 16 17 C -0.21 -3.23 8.21 -39.50 -0.32 -3.56 16 18 C 0.13 1.95 6.58 -39.01 -0.26 1.70 16 19 O -0.31 -4.12 8.82 -18.84 -0.17 -4.29 16 20 C 0.07 0.76 2.85 -26.74 -0.08 0.69 16 21 C -0.18 -1.67 9.16 37.16 0.34 -1.33 16 22 C -0.15 -1.16 9.56 37.15 0.36 -0.80 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 26 H 0.14 2.57 7.64 -52.49 -0.40 2.17 16 27 H 0.39 9.76 5.92 -40.82 -0.24 9.52 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.13 2.27 6.39 -52.49 -0.34 1.93 16 30 H 0.13 1.62 5.40 -52.49 -0.28 1.34 16 31 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -31.29 311.90 -6.46 -37.76 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.80 Total: 9.68 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.91 Total: -8.89 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.66 Total: -37.71 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.08 Total: -21.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.29 -6.46 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.703 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds