Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37703 * 119.95473 * 2 1 4 4 C 1.39782 * 119.90272 * 179.97438 * 3 2 1 5 5 C 1.47493 * 120.09470 * 179.97438 * 4 3 2 6 6 O 1.21619 * 119.99841 * 0.02562 * 5 4 3 7 7 N 1.34767 * 120.00190 * 180.02562 * 5 4 3 8 8 C 1.36899 * 120.00218 * 180.02562 * 7 5 4 9 9 H 1.08004 * 119.99976 * 0.02562 * 8 7 5 10 10 C 1.39028 * 120.00235 * 179.97438 * 8 7 5 11 11 N 1.31382 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99878 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47142 * 90.00294 * 12 10 8 14 14 H 1.48504 * 109.47194 * 210.00448 * 12 10 8 15 15 H 1.48501 * 109.47427 * 330.00052 * 12 10 8 16 16 C 1.39824 * 119.81206 * 359.75284 * 4 3 2 17 17 C 1.37661 * 119.90353 * 0.47882 * 16 4 3 18 18 C 1.38999 * 119.94728 * 179.97438 * 2 1 3 19 19 O 1.35711 * 119.90515 * 359.97438 * 18 2 1 20 20 C 1.42906 * 116.99847 * 174.59673 * 19 18 2 21 21 C 1.52998 * 109.46721 * 84.78243 * 20 19 18 22 22 C 1.52992 * 109.47118 * 204.78367 * 20 19 18 23 23 H 1.08997 * 109.46808 * 270.02438 * 1 2 3 24 24 H 1.08999 * 109.46632 * 30.02077 * 1 2 3 25 25 H 1.08995 * 109.47330 * 150.02296 * 1 2 3 26 26 H 1.07998 * 120.05161 * 359.97438 * 3 2 1 27 27 H 0.97001 * 120.00108 * 359.97438 * 7 5 4 28 28 H 0.96996 * 119.99282 * 180.02562 * 11 10 8 29 29 H 1.07996 * 120.04473 * 180.26730 * 16 4 3 30 30 H 1.08001 * 119.95272 * 179.79320 * 17 16 4 31 31 H 1.09001 * 109.46803 * 324.79154 * 20 19 18 32 32 H 1.09000 * 109.46984 * 179.97438 * 21 20 19 33 33 H 1.09000 * 109.47836 * 300.00027 * 21 20 19 34 34 H 1.09006 * 109.47162 * 60.00667 * 21 20 19 35 35 H 1.09000 * 109.46934 * 60.00227 * 22 20 19 36 36 H 1.09000 * 109.47125 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.47266 * 299.99805 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1931 0.0000 4 6 3.5924 1.1918 0.0005 5 6 4.3332 2.4673 0.0000 6 8 3.7277 3.5220 -0.0005 7 7 5.6808 2.4638 0.0000 8 6 6.3684 3.6477 0.0000 9 1 5.8307 4.5844 0.0004 10 6 7.7586 3.6442 0.0005 11 7 8.4126 2.5047 0.0005 12 14 8.6967 5.2596 0.0012 13 1 8.9448 5.6873 1.4015 14 1 9.9941 5.0790 -0.6984 15 1 7.8970 6.2967 -0.6989 16 6 4.2865 -0.0220 0.0063 17 6 3.5912 -1.2101 0.0015 18 6 2.2009 -1.2044 0.0005 19 8 1.5193 -2.3779 0.0016 20 6 2.2897 -3.5757 -0.1178 21 6 2.7920 -3.9987 1.2640 22 6 1.4173 -4.6866 -0.7055 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5134 26 1 1.6547 2.1284 -0.0004 27 1 6.1637 1.6226 0.0007 28 1 9.3826 2.5023 0.0013 29 1 5.3664 -0.0273 0.0111 30 1 4.1265 -2.1481 0.0025 31 1 3.1409 -3.3962 -0.7745 32 1 3.3792 -4.9125 1.1731 33 1 3.4136 -3.2072 1.6828 34 1 1.9408 -4.1782 1.9209 35 1 1.0594 -4.3852 -1.6900 36 1 2.0047 -5.6003 -0.7961 37 1 0.5661 -4.8661 -0.0487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082546463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -84.843021 kcal Electronic energy + Delta-G solvation = -19329.536458 eV Core-core repulsion = 16263.776666 eV Total energy + Delta-G solvation = -3065.759792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52600 -40.22880 -38.27874 -36.11260 -34.54577 -33.56187 -33.06388 -31.13060 -28.15626 -27.98130 -26.93634 -24.62023 -23.46081 -21.72057 -20.92505 -20.13819 -19.07376 -18.04235 -17.16113 -16.66477 -16.46639 -15.87711 -15.71909 -15.48462 -15.14448 -15.00714 -14.51665 -14.13972 -14.03861 -13.58051 -13.47540 -13.36195 -13.13702 -13.02030 -12.94014 -12.73849 -12.58659 -12.46701 -12.12916 -12.06766 -11.71031 -11.56717 -11.49429 -10.53076 -10.12812 -9.87492 -9.12038 -8.55963 -6.01159 0.00165 0.31554 1.39294 1.40457 1.54181 2.02932 2.19494 2.26488 2.79466 3.11898 3.29051 3.71301 3.80657 3.89816 4.02733 4.14616 4.21099 4.25484 4.32476 4.50582 4.69487 4.75077 4.84300 4.85862 4.87073 4.91593 4.94681 5.20578 5.22377 5.26660 5.33211 5.34899 5.37405 5.49108 5.73652 5.93897 6.43689 6.50098 7.01935 7.43229 7.99881 8.61624 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.004316 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.041195 B = 6486.526446 C = 7274.305028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.130 4.130 3 C -0.046 4.046 4 C -0.162 4.162 5 C 0.469 3.531 6 O -0.640 6.640 7 N -0.554 5.554 8 C -0.339 4.339 9 H 0.083 0.917 10 C -0.009 4.009 11 N -0.912 5.912 12 Si 1.000 3.000 13 H -0.268 1.268 14 H -0.266 1.266 15 H -0.271 1.271 16 C -0.066 4.066 17 C -0.202 4.202 18 C 0.145 3.855 19 O -0.309 6.309 20 C 0.062 3.938 21 C -0.179 4.179 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.397 0.603 28 H 0.282 0.718 29 H 0.128 0.872 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 -16.949 -0.127 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C -0.065 4.065 4 C -0.166 4.166 5 C 0.259 3.741 6 O -0.530 6.530 7 N -0.189 5.189 8 C -0.469 4.469 9 H 0.101 0.899 10 C -0.210 4.210 11 N -0.552 5.552 12 Si 0.822 3.178 13 H -0.193 1.193 14 H -0.191 1.191 15 H -0.196 1.196 16 C -0.086 4.086 17 C -0.221 4.221 18 C 0.098 3.902 19 O -0.222 6.222 20 C 0.007 3.993 21 C -0.237 4.237 22 C -0.200 4.200 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.146 0.854 27 H 0.233 0.767 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.177 0.823 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.402 -16.364 -0.117 19.390 hybrid contribution 1.231 0.612 0.063 1.376 sum -9.171 -15.752 -0.054 18.227 Atomic orbital electron populations 1.20607 0.88239 1.03414 1.03034 1.19400 0.98035 0.89350 1.06277 1.20932 0.92159 0.97946 0.95472 1.19948 0.94861 0.92664 1.09101 1.18441 0.82594 0.89298 0.83777 1.90533 1.68976 1.34426 1.59089 1.41866 1.04850 1.09337 1.62870 1.19801 0.89947 0.86958 1.50160 0.89919 1.26181 0.96710 1.02576 0.95550 1.69650 1.09710 1.27167 1.48667 0.84837 0.77335 0.76724 0.78896 1.19325 1.19053 1.19612 1.21194 1.00061 0.91203 0.96113 1.21340 0.93023 0.99164 1.08551 1.18972 0.90267 0.86085 0.94864 1.86064 1.36717 1.12329 1.87134 1.22815 0.95322 0.82937 0.98247 1.22393 1.02242 1.02829 0.96186 1.21862 1.00435 0.96497 1.01217 0.90541 0.90970 0.90285 0.85447 0.76707 0.90791 0.85439 0.82309 0.90350 0.88806 0.92942 0.91465 0.91906 0.88352 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.78 71.24 0.70 -1.58 16 2 C -0.13 -4.00 5.89 -19.81 -0.12 -4.12 16 3 C -0.05 -1.73 9.23 22.52 0.21 -1.53 16 4 C -0.16 -6.98 5.88 -20.08 -0.12 -7.10 16 5 C 0.47 25.21 7.71 86.68 0.67 25.88 16 6 O -0.64 -38.81 15.91 -4.09 -0.07 -38.88 16 7 N -0.55 -30.56 5.23 -309.93 -1.62 -32.18 16 8 C -0.34 -19.96 9.68 84.09 0.81 -19.15 16 9 H 0.08 5.15 7.15 -2.91 -0.02 5.13 16 10 C -0.01 -0.50 5.50 84.95 0.47 -0.03 16 11 N -0.91 -49.31 13.05 21.68 0.28 -49.02 16 12 Si 1.00 42.95 29.55 68.60 2.03 44.97 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C -0.07 -2.39 9.53 22.52 0.21 -2.18 16 17 C -0.20 -5.83 8.21 22.32 0.18 -5.65 16 18 C 0.14 4.12 6.58 22.64 0.15 4.27 16 19 O -0.31 -7.26 8.82 -90.32 -0.80 -8.06 16 20 C 0.06 1.05 2.85 30.59 0.09 1.14 16 21 C -0.18 -2.69 9.16 71.98 0.66 -2.03 16 22 C -0.14 -1.71 9.56 71.98 0.69 -1.02 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 25 H 0.08 1.68 7.52 -2.39 -0.02 1.66 16 26 H 0.13 4.99 7.64 -2.91 -0.02 4.97 16 27 H 0.40 20.57 5.92 -92.71 -0.55 20.02 16 28 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.13 4.56 6.39 -2.91 -0.02 4.54 16 30 H 0.16 3.54 5.40 -2.91 -0.02 3.53 16 31 H 0.08 1.28 6.31 -2.39 -0.02 1.27 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.95 6.88 -2.39 -0.02 0.93 16 34 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.86 311.90 4.97 -64.89 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.54 Total: 31.37 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.60 Total: -13.09 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -1.34 Total: -81.20 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.86 Total: -46.93 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.86 4.97 -64.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082546463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -69.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds