Wall clock time and date at job start Mon Mar 30 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76200 * 102.99658 * 2 1 4 4 C 1.38921 * 120.00291 * 180.02562 * 3 2 1 5 5 C 1.38066 * 119.99357 * 179.97438 * 4 3 2 6 6 C 1.38870 * 120.00780 * 0.02562 * 5 4 3 7 7 N 1.40003 * 119.99894 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00431 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47286 * 180.91359 * 8 7 6 10 10 C 1.50705 * 115.54819 * 65.13081 * 9 8 7 11 11 H 1.08011 * 119.99296 * 265.36698 * 10 9 8 12 12 C 1.37870 * 120.00267 * 85.36263 * 10 9 8 13 13 N 1.31509 * 120.00227 * 353.39422 * 12 10 9 14 14 Si 1.86800 * 119.99891 * 173.39216 * 12 10 9 15 15 H 1.48501 * 109.47473 * 59.99890 * 14 12 10 16 16 H 1.48501 * 109.47399 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47255 * 300.00086 * 14 12 10 18 18 C 1.52997 * 117.50310 * 279.45435 * 9 8 7 19 19 C 1.53001 * 117.50159 * 210.79350 * 9 8 7 20 20 C 1.38879 * 120.00927 * 0.25121 * 6 5 4 21 21 C 1.38070 * 120.00339 * 359.44717 * 20 6 5 22 22 H 1.09008 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47099 * 299.99782 * 1 2 3 24 24 H 1.08999 * 109.47536 * 59.99980 * 1 2 3 25 25 H 1.07998 * 119.99975 * 359.95676 * 4 3 2 26 26 H 1.07997 * 119.99710 * 179.97438 * 5 4 3 27 27 H 0.97008 * 119.99886 * 0.02562 * 7 6 5 28 28 H 1.08999 * 109.47442 * 300.91913 * 8 7 6 29 29 H 1.09002 * 109.46772 * 60.91356 * 8 7 6 30 30 H 0.96996 * 120.00638 * 185.06434 * 13 12 10 31 31 H 1.09004 * 117.49624 * 0.02562 * 18 9 8 32 32 H 1.09002 * 117.49695 * 145.01679 * 18 9 8 33 33 H 1.08998 * 117.50289 * 214.98055 * 19 9 8 34 34 H 1.08997 * 117.49568 * 359.97438 * 19 9 8 35 35 H 1.07997 * 119.99263 * 179.72611 * 20 6 5 36 36 H 1.07996 * 120.00259 * 180.27727 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1232 -0.0005 5 6 3.8490 3.4685 -0.0011 6 6 2.8333 4.4155 -0.0005 7 7 3.1482 5.7797 -0.0005 8 6 2.0767 6.7788 -0.0005 9 6 2.6874 8.1815 -0.0235 10 6 3.4576 8.5347 -1.2698 11 1 4.5284 8.3964 -1.3001 12 6 2.7955 9.0342 -2.3711 13 7 1.4813 9.0811 -2.3830 14 14 3.7652 9.6444 -3.8465 15 1 4.5849 8.5337 -4.3940 16 1 2.8262 10.1283 -4.8903 17 1 4.6554 10.7569 -3.4281 18 6 3.1883 8.7558 1.3031 19 6 1.9080 9.3027 0.6667 20 6 1.5052 4.0096 0.0058 21 6 1.1944 2.6643 0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 4.3287 1.3867 -0.0003 26 1 4.8818 3.7845 -0.0011 27 1 4.0758 6.0634 -0.0013 28 1 1.4509 6.6405 -0.8821 29 1 1.4703 6.6612 0.8976 30 1 1.0132 9.3632 -3.1843 31 1 3.0832 8.1342 2.1923 32 1 4.0748 9.3894 1.2745 33 1 1.9528 10.2958 0.2198 34 1 0.9601 9.0411 1.1368 35 1 0.7155 4.7463 0.0107 36 1 0.1616 2.3487 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:12 Heat of formation + Delta-G solvation = 44.268532 kcal Electronic energy + Delta-G solvation = -16980.085931 eV Core-core repulsion = 14362.677707 eV Total energy + Delta-G solvation = -2617.408224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.98336 -36.96541 -34.18384 -32.03056 -30.94784 -29.24660 -28.67053 -25.87515 -25.00595 -22.34806 -21.44833 -21.01675 -19.25883 -17.50394 -16.57911 -16.22360 -15.25010 -14.72389 -14.44566 -14.22266 -13.99481 -13.81856 -13.52940 -13.30151 -13.02550 -12.68864 -12.54455 -12.03555 -11.71615 -11.49119 -11.04898 -10.99395 -10.77670 -10.59057 -10.33448 -10.08343 -10.03440 -9.63157 -8.95915 -8.67778 -8.54285 -8.28783 -7.96160 -6.47299 -6.13333 -4.21268 1.71969 1.74463 1.83309 2.62249 3.24486 3.29950 3.32191 4.10018 4.16873 4.32499 5.01311 5.02914 5.10765 5.15294 5.23004 5.27426 5.56642 5.67635 5.82727 5.91712 6.01807 6.25110 6.26842 6.35503 6.45921 6.51952 6.63641 6.65601 6.74356 6.76001 7.00403 7.14756 7.33495 7.40795 7.76577 7.99847 8.28877 8.44273 8.79154 9.45725 10.94590 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026101 B = 0.004328 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.478764 B = 6468.340507 C = 6756.689412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.150 6.150 3 C -0.163 4.163 4 C -0.045 4.045 5 C -0.194 4.194 6 C 0.236 3.764 7 N -0.717 5.717 8 C 0.164 3.836 9 C 0.030 3.970 10 C -0.499 4.499 11 H 0.059 0.941 12 C 0.075 3.925 13 N -0.877 5.877 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.210 4.210 19 C -0.149 4.149 20 C -0.188 4.188 21 C -0.076 4.076 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.401 0.599 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 -12.413 4.994 13.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.088 5.912 3 C -0.277 4.277 4 C -0.069 4.069 5 C -0.218 4.218 6 C 0.125 3.875 7 N -0.340 5.340 8 C 0.041 3.959 9 C 0.029 3.971 10 C -0.537 4.537 11 H 0.077 0.923 12 C -0.129 4.129 13 N -0.513 5.513 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.247 4.247 19 C -0.187 4.187 20 C -0.213 4.213 21 C -0.100 4.100 22 H 0.119 0.881 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.236 0.764 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.800 -13.114 4.893 14.020 hybrid contribution -0.152 1.677 -0.932 1.925 sum -0.952 -11.436 3.961 12.140 Atomic orbital electron populations 1.23550 0.95303 1.06316 1.05414 1.85073 1.06004 1.05480 1.94619 1.21048 0.96467 0.94882 1.15308 1.20341 0.93899 0.95046 0.97611 1.20475 0.98194 0.91899 1.11276 1.18055 0.93166 0.84957 0.91283 1.45040 1.09881 1.01210 1.77869 1.21017 0.88526 0.87697 0.98697 1.18974 0.98348 0.89119 0.90648 1.20302 0.93226 1.43458 0.96685 0.92317 1.24955 0.94840 0.94755 0.98348 1.69946 1.06557 1.46511 1.28327 0.86691 0.79895 0.79424 0.82211 1.20196 1.21228 1.20170 1.23018 0.98541 1.05726 0.97458 1.22495 0.92605 1.00091 1.03487 1.20557 0.95069 0.95458 1.10209 1.20807 0.97470 0.92523 0.99207 0.88085 0.90111 0.90045 0.86291 0.86008 0.76399 0.91473 0.95294 0.92797 0.91622 0.90382 0.89832 0.91743 0.85804 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.15 101.05 0.92 -0.37 16 2 S -0.15 -1.90 22.56 -107.50 -2.43 -4.33 16 3 C -0.16 -2.44 6.11 -39.08 -0.24 -2.68 16 4 C -0.05 -0.68 9.78 -39.39 -0.39 -1.06 16 5 C -0.19 -3.05 9.89 -39.41 -0.39 -3.44 16 6 C 0.24 4.15 6.66 -83.65 -0.56 3.59 16 7 N -0.72 -13.57 5.66 -58.56 -0.33 -13.90 16 8 C 0.16 3.47 4.74 -4.04 -0.02 3.45 16 9 C 0.03 0.68 1.37 -155.66 -0.21 0.47 16 10 C -0.50 -12.75 8.66 -34.44 -0.30 -13.05 16 11 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 12 C 0.08 1.97 5.39 -17.82 -0.10 1.87 16 13 N -0.88 -23.82 12.92 55.43 0.72 -23.11 16 14 Si 0.89 20.53 29.55 -169.99 -5.02 15.50 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.21 -4.31 9.96 -26.70 -0.27 -4.57 16 19 C -0.15 -3.30 9.42 -26.69 -0.25 -3.55 16 20 C -0.19 -3.19 9.31 -39.41 -0.37 -3.56 16 21 C -0.08 -1.16 9.36 -39.39 -0.37 -1.52 16 22 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 23 H 0.08 0.72 7.74 -51.92 -0.40 0.32 16 24 H 0.08 0.75 7.74 -51.92 -0.40 0.35 16 25 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 26 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.40 7.45 8.41 -40.82 -0.34 7.11 16 28 H 0.07 1.59 7.92 -51.93 -0.41 1.18 16 29 H 0.03 0.58 7.93 -51.93 -0.41 0.17 16 30 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.12 2.10 6.73 -52.49 -0.35 1.75 16 36 H 0.12 1.48 5.86 -52.49 -0.31 1.17 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -26.77 317.10 -9.95 -36.72 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.14 Total: 8.77 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.53 Total: -24.43 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.38 Total: -37.01 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.43 Total: -4.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.77 -9.95 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.985 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds