Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76200 * 102.99658 * 2 1 4 4 C 1.38921 * 120.00291 * 180.02562 * 3 2 1 5 5 C 1.38066 * 119.99357 * 179.97438 * 4 3 2 6 6 C 1.38870 * 120.00780 * 0.02562 * 5 4 3 7 7 N 1.40003 * 119.99894 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00431 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47286 * 180.91359 * 8 7 6 10 10 C 1.50705 * 115.54819 * 65.13081 * 9 8 7 11 11 H 1.08011 * 119.99296 * 265.36698 * 10 9 8 12 12 C 1.37870 * 120.00267 * 85.36263 * 10 9 8 13 13 N 1.31509 * 120.00227 * 353.39422 * 12 10 9 14 14 Si 1.86800 * 119.99891 * 173.39216 * 12 10 9 15 15 H 1.48501 * 109.47473 * 59.99890 * 14 12 10 16 16 H 1.48501 * 109.47399 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47255 * 300.00086 * 14 12 10 18 18 C 1.52997 * 117.50310 * 279.45435 * 9 8 7 19 19 C 1.53001 * 117.50159 * 210.79350 * 9 8 7 20 20 C 1.38879 * 120.00927 * 0.25121 * 6 5 4 21 21 C 1.38070 * 120.00339 * 359.44717 * 20 6 5 22 22 H 1.09008 * 109.46980 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47099 * 299.99782 * 1 2 3 24 24 H 1.08999 * 109.47536 * 59.99980 * 1 2 3 25 25 H 1.07998 * 119.99975 * 359.95676 * 4 3 2 26 26 H 1.07997 * 119.99710 * 179.97438 * 5 4 3 27 27 H 0.97008 * 119.99886 * 0.02562 * 7 6 5 28 28 H 1.08999 * 109.47442 * 300.91913 * 8 7 6 29 29 H 1.09002 * 109.46772 * 60.91356 * 8 7 6 30 30 H 0.96996 * 120.00638 * 185.06434 * 13 12 10 31 31 H 1.09004 * 117.49624 * 0.02562 * 18 9 8 32 32 H 1.09002 * 117.49695 * 145.01679 * 18 9 8 33 33 H 1.08998 * 117.50289 * 214.98055 * 19 9 8 34 34 H 1.08997 * 117.49568 * 359.97438 * 19 9 8 35 35 H 1.07997 * 119.99263 * 179.72611 * 20 6 5 36 36 H 1.07996 * 120.00259 * 180.27727 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1232 -0.0005 5 6 3.8490 3.4685 -0.0011 6 6 2.8333 4.4155 -0.0005 7 7 3.1482 5.7797 -0.0005 8 6 2.0767 6.7788 -0.0005 9 6 2.6874 8.1815 -0.0235 10 6 3.4576 8.5347 -1.2698 11 1 4.5284 8.3964 -1.3001 12 6 2.7955 9.0342 -2.3711 13 7 1.4813 9.0811 -2.3830 14 14 3.7652 9.6444 -3.8465 15 1 4.5849 8.5337 -4.3940 16 1 2.8262 10.1283 -4.8903 17 1 4.6554 10.7569 -3.4281 18 6 3.1883 8.7558 1.3031 19 6 1.9080 9.3027 0.6667 20 6 1.5052 4.0096 0.0058 21 6 1.1944 2.6643 0.0001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 4.3287 1.3867 -0.0003 26 1 4.8818 3.7845 -0.0011 27 1 4.0758 6.0634 -0.0013 28 1 1.4509 6.6405 -0.8821 29 1 1.4703 6.6612 0.8976 30 1 1.0132 9.3632 -3.1843 31 1 3.0832 8.1342 2.1923 32 1 4.0748 9.3894 1.2745 33 1 1.9528 10.2958 0.2198 34 1 0.9601 9.0411 1.1368 35 1 0.7155 4.7463 0.0107 36 1 0.1616 2.3487 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = 31.751737 kcal Electronic energy + Delta-G solvation = -16980.628700 eV Core-core repulsion = 14362.677707 eV Total energy + Delta-G solvation = -2617.950993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27768 -38.62745 -35.61726 -33.99670 -32.11885 -30.49626 -29.60279 -27.71130 -26.63514 -23.60039 -23.00982 -22.47788 -21.03474 -18.70063 -18.14782 -17.70521 -16.74188 -16.55126 -15.75829 -15.48183 -15.37287 -15.04555 -14.68004 -14.51726 -14.37574 -14.25348 -13.56016 -13.48853 -13.34567 -12.95628 -12.83621 -12.66036 -12.40237 -12.06962 -11.97515 -11.42852 -11.42096 -11.09849 -10.78289 -10.45971 -10.05045 -9.89424 -9.16818 -8.12347 -7.70395 -6.23787 0.49737 0.58719 0.78698 1.40531 1.42089 1.48043 1.64284 2.40116 2.66897 2.91025 3.16425 3.53272 3.94320 4.06057 4.23532 4.31687 4.34452 4.46315 4.54655 4.59987 4.64131 4.71560 4.76149 4.90003 4.97163 5.01402 5.09263 5.24807 5.30833 5.43313 5.49105 5.61086 5.61248 5.75749 5.91345 6.34949 6.56906 6.80994 7.03360 7.44943 8.94996 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.026101 B = 0.004328 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.478764 B = 6468.340507 C = 6756.689412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.157 6.157 3 C -0.165 4.165 4 C -0.051 4.051 5 C -0.192 4.192 6 C 0.211 3.789 7 N -0.723 5.723 8 C 0.185 3.815 9 C 0.007 3.993 10 C -0.506 4.506 11 H 0.054 0.946 12 C 0.030 3.970 13 N -0.905 5.905 14 Si 0.944 3.056 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.272 1.272 18 C -0.182 4.182 19 C -0.157 4.157 20 C -0.203 4.203 21 C -0.080 4.080 22 H 0.125 0.875 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.401 0.599 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -14.091 5.503 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.081 5.919 3 C -0.279 4.279 4 C -0.075 4.075 5 C -0.217 4.217 6 C 0.103 3.897 7 N -0.349 5.349 8 C 0.060 3.940 9 C 0.006 3.994 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.171 4.171 13 N -0.542 5.542 14 Si 0.771 3.229 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.219 4.219 19 C -0.195 4.195 20 C -0.227 4.227 21 C -0.103 4.103 22 H 0.143 0.857 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.236 0.764 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.481 -14.827 5.410 15.791 hybrid contribution -0.280 2.040 -1.061 2.317 sum -0.761 -12.787 4.349 13.528 Atomic orbital electron populations 1.23687 0.92374 1.08141 1.05985 1.85120 1.09267 1.03253 1.94263 1.21382 0.96546 0.96475 1.13478 1.20649 0.94688 0.95094 0.97049 1.20682 0.98557 0.92038 1.10399 1.18269 0.93989 0.84570 0.92845 1.44826 1.09117 1.01446 1.79465 1.20575 0.88623 0.87372 0.97418 1.19049 0.99243 0.90076 0.91008 1.20590 0.93259 1.42732 0.97816 0.92761 1.25589 0.95566 0.95217 1.00722 1.70051 1.07655 1.47771 1.28742 0.85834 0.78663 0.78892 0.79544 1.20041 1.21325 1.19746 1.22987 0.97411 1.04620 0.96928 1.22429 0.94070 0.98830 1.04149 1.20653 0.94801 0.96309 1.10964 1.21035 0.98809 0.91781 0.98703 0.85657 0.89350 0.89654 0.84272 0.84591 0.76420 0.94988 0.94438 0.93139 0.89309 0.90244 0.92090 0.90618 0.86700 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.15 113.37 1.04 -1.06 16 2 S -0.16 -3.60 22.56 -56.49 -1.27 -4.87 16 3 C -0.16 -4.62 6.11 22.60 0.14 -4.48 16 4 C -0.05 -1.44 9.78 22.39 0.22 -1.22 16 5 C -0.19 -5.85 9.89 22.38 0.22 -5.63 16 6 C 0.21 7.38 6.66 38.14 0.25 7.63 16 7 N -0.72 -27.46 5.66 -339.19 -1.92 -29.38 16 8 C 0.18 7.90 4.74 86.38 0.41 8.31 16 9 C 0.01 0.32 1.37 -52.93 -0.07 0.24 16 10 C -0.51 -26.08 8.66 25.60 0.22 -25.85 16 11 H 0.05 2.77 7.82 -2.90 -0.02 2.75 16 12 C 0.03 1.59 5.39 84.65 0.46 2.04 16 13 N -0.90 -50.15 12.92 21.44 0.28 -49.87 16 14 Si 0.94 42.47 29.55 68.60 2.03 44.50 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.18 -7.26 9.96 30.62 0.30 -6.96 16 19 C -0.16 -6.97 9.42 30.62 0.29 -6.68 16 20 C -0.20 -6.84 9.31 22.38 0.21 -6.63 16 21 C -0.08 -2.30 9.36 22.39 0.21 -2.09 16 22 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.09 1.30 7.74 -2.39 -0.02 1.28 16 24 H 0.08 1.32 7.74 -2.39 -0.02 1.30 16 25 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 27 H 0.40 14.87 8.41 -92.70 -0.78 14.09 16 28 H 0.03 1.57 7.92 -2.39 -0.02 1.55 16 29 H 0.04 1.51 7.93 -2.39 -0.02 1.49 16 30 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 31 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.11 3.99 6.73 -2.91 -0.02 3.98 16 36 H 0.14 3.24 5.86 -2.91 -0.02 3.22 16 Total: -1.00 -56.87 317.10 3.30 -53.57 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.29 Total: 28.44 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 3.90 Total: -42.38 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.64 Total: -79.25 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.27 Total: -4.87 kcal Total: -56.87 3.30 -53.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.323 kcal (2) G-P(sol) polarization free energy of solvation -56.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds