Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38262 * 119.90080 * 2 1 4 4 C 1.38247 * 120.20098 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.99233 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.10198 * 179.97438 * 5 4 3 7 7 C 1.81403 * 102.99958 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47067 * 179.97438 * 7 6 5 9 9 C 1.50704 * 115.54728 * 39.93452 * 8 7 6 10 10 H 1.07998 * 120.00147 * 264.88370 * 9 8 7 11 11 C 1.37885 * 119.99817 * 84.88672 * 9 8 7 12 12 N 1.31514 * 120.00107 * 353.91350 * 11 9 8 13 13 Si 1.86796 * 119.99747 * 173.90693 * 11 9 8 14 14 H 1.48504 * 109.46702 * 90.00426 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00281 * 13 11 9 16 16 H 1.48497 * 109.47727 * 330.00821 * 13 11 9 17 17 C 1.52994 * 117.50287 * 254.22768 * 8 7 6 18 18 C 1.52993 * 117.50002 * 185.60336 * 8 7 6 19 19 C 1.39529 * 119.79467 * 0.25332 * 5 4 3 20 20 N 1.40005 * 120.09554 * 179.75165 * 19 5 4 21 21 C 1.38288 * 119.89530 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47006 * 90.00435 * 1 2 3 23 23 H 1.08997 * 109.47358 * 210.00567 * 1 2 3 24 24 H 1.09003 * 109.47179 * 330.00894 * 1 2 3 25 25 H 1.08002 * 119.90363 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.00513 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.46966 * 60.00014 * 7 6 5 28 28 H 1.08993 * 109.47351 * 300.00003 * 7 6 5 29 29 H 0.97000 * 119.99830 * 175.00944 * 12 11 9 30 30 H 1.09005 * 117.49900 * 0.02562 * 17 8 7 31 31 H 1.09002 * 117.50512 * 145.02055 * 17 8 7 32 32 H 1.09004 * 117.50005 * 214.98600 * 18 8 7 33 33 H 1.09004 * 117.49958 * 359.97438 * 18 8 7 34 34 H 0.97003 * 120.00163 * 359.97438 * 20 19 5 35 35 H 0.97003 * 119.99764 * 180.02562 * 20 19 5 36 36 H 1.07996 * 120.00171 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1986 0.0000 4 6 3.5786 1.2058 -0.0005 5 6 4.2784 0.0079 -0.0005 6 16 6.0404 0.0138 -0.0019 7 6 6.4426 1.7827 -0.0038 8 6 7.9623 1.9602 -0.0045 9 6 8.7284 0.9991 -0.8766 10 1 9.1441 0.0977 -0.4512 11 6 8.8987 1.2708 -2.2176 12 7 8.2935 2.3041 -2.7613 13 14 9.9893 0.1713 -3.2621 14 1 9.1745 -0.9263 -3.8425 15 1 10.5945 0.9709 -4.3574 16 1 11.0657 -0.4051 -2.4170 17 6 8.6216 2.4098 1.3008 18 6 8.5073 3.3837 0.1264 19 6 3.5826 -1.2015 -0.0053 20 7 4.2825 -2.4141 -0.0106 21 6 2.1962 -1.1989 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 1.6530 2.1321 -0.0004 26 1 4.1138 2.1439 -0.0010 27 1 6.0228 2.2517 0.8861 28 1 6.0214 2.2501 -0.8938 29 1 8.4697 2.5380 -3.6860 30 1 7.9728 2.5788 2.1603 31 1 9.6099 2.0105 1.5292 32 1 9.4203 3.6251 -0.4180 33 1 7.7832 4.1939 0.2126 34 1 5.2525 -2.4142 -0.0113 35 1 3.7973 -3.2540 -0.0143 36 1 1.6545 -2.1332 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = 35.374606 kcal Electronic energy + Delta-G solvation = -17113.423668 eV Core-core repulsion = 14495.629775 eV Total energy + Delta-G solvation = -2617.793894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98001 -36.63596 -34.51895 -32.13803 -31.94699 -28.53474 -27.76445 -26.67467 -25.32634 -22.07687 -21.16569 -21.07304 -19.28782 -17.08123 -16.70020 -15.92789 -15.82188 -14.64206 -14.28223 -14.10506 -13.81161 -13.72346 -13.44102 -13.17082 -12.86807 -12.46147 -12.10630 -12.07701 -11.60978 -11.33386 -11.03398 -10.91893 -10.66323 -10.51251 -10.22719 -10.17681 -9.73526 -9.34193 -8.97938 -8.78852 -8.46408 -8.07578 -7.56744 -6.27353 -6.06938 -4.12573 1.66553 1.95538 2.45499 3.29687 3.36977 3.39772 3.51081 4.12327 4.21292 4.40375 5.11161 5.16276 5.22323 5.27187 5.46811 5.62327 5.68384 5.81144 5.88978 5.93658 6.12180 6.13875 6.31583 6.38833 6.44009 6.49100 6.68539 6.69438 6.77432 6.96064 7.01715 7.19773 7.30458 7.43449 7.76751 7.84901 8.06096 8.33286 8.87577 9.53424 11.01743 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.005762 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.539988 B = 4858.258248 C = 5316.358333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.064 4.064 3 C -0.160 4.160 4 C -0.090 4.090 5 C -0.164 4.164 6 S -0.084 6.084 7 C -0.045 4.045 8 C 0.052 3.948 9 C -0.489 4.489 10 H 0.063 0.937 11 C 0.079 3.921 12 N -0.875 5.875 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.207 4.207 18 C -0.149 4.149 19 C 0.230 3.770 20 N -0.874 5.874 21 C -0.188 4.188 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.393 0.607 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 -4.294 5.143 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.116 4.116 5 C -0.281 4.281 6 S 0.164 5.836 7 C -0.194 4.194 8 C 0.051 3.949 9 C -0.527 4.527 10 H 0.081 0.919 11 C -0.125 4.125 12 N -0.511 5.511 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.244 4.244 18 C -0.189 4.189 19 C 0.120 3.880 20 N -0.414 5.414 21 C -0.213 4.213 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.221 0.779 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.198 -5.102 4.950 12.431 hybrid contribution -0.141 0.396 -0.760 0.868 sum -10.339 -4.706 4.190 12.107 Atomic orbital electron populations 1.20716 0.91817 1.02115 1.01812 1.19490 0.95190 0.92655 0.99426 1.20629 0.93626 0.97008 1.06896 1.20985 0.94344 0.96443 0.99784 1.21895 1.00475 0.94452 1.11284 1.85391 0.93349 1.13863 1.91033 1.23272 1.01690 0.92117 1.02281 1.18474 0.87554 0.94837 0.94063 1.20303 1.34094 1.05997 0.92342 0.91894 1.24907 0.94941 0.95305 0.97394 1.69998 1.40165 1.27286 1.13645 0.86674 0.80910 0.80841 0.80122 1.20415 1.21244 1.19814 1.23081 1.01848 1.07359 0.92134 1.22558 1.02382 0.93338 1.00606 1.17234 0.90692 0.85234 0.94849 1.42542 1.09336 1.04457 1.85113 1.20234 0.91431 0.97705 1.11959 0.91619 0.92086 0.91900 0.86823 0.86074 0.92870 0.89765 0.92965 0.91562 0.90168 0.89754 0.91835 0.76697 0.77904 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 2 C -0.06 -0.90 5.88 -104.60 -0.62 -1.52 16 3 C -0.16 -2.47 9.69 -39.57 -0.38 -2.85 16 4 C -0.09 -1.61 9.36 -39.40 -0.37 -1.98 16 5 C -0.16 -3.10 6.12 -38.92 -0.24 -3.34 16 6 S -0.08 -1.75 19.30 -107.50 -2.07 -3.83 16 7 C -0.04 -1.00 4.45 37.16 0.17 -0.83 16 8 C 0.05 1.25 1.65 -155.66 -0.26 1.00 16 9 C -0.49 -12.87 7.55 -34.44 -0.26 -13.13 16 10 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 12 N -0.87 -24.24 12.93 55.43 0.72 -23.53 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C -0.21 -4.42 9.88 -26.74 -0.26 -4.68 16 18 C -0.15 -3.39 9.46 -26.74 -0.25 -3.65 16 19 C 0.23 3.82 6.76 -83.49 -0.56 3.26 16 20 N -0.87 -12.41 9.04 32.55 0.29 -12.11 16 21 C -0.19 -2.75 9.54 -39.41 -0.38 -3.13 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 26 H 0.12 2.16 5.88 -52.48 -0.31 1.85 16 27 H 0.05 1.07 7.55 -51.92 -0.39 0.68 16 28 H 0.08 2.01 7.75 -51.93 -0.40 1.61 16 29 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.40 6.05 7.38 -40.82 -0.30 5.75 16 35 H 0.39 4.28 8.85 -40.82 -0.36 3.92 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -28.36 314.34 -9.61 -37.97 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.11 Total: 10.42 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -3.15 Total: -29.60 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 1.01 Total: -35.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.07 Total: -3.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.36 -9.61 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.342 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds