Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38262 * 119.90080 * 2 1 4 4 C 1.38247 * 120.20098 * 180.02562 * 3 2 1 5 5 C 1.38733 * 119.99233 * 359.97438 * 4 3 2 6 6 S 1.76200 * 120.10198 * 179.97438 * 5 4 3 7 7 C 1.81403 * 102.99958 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47067 * 179.97438 * 7 6 5 9 9 C 1.50704 * 115.54728 * 39.93452 * 8 7 6 10 10 H 1.07998 * 120.00147 * 264.88370 * 9 8 7 11 11 C 1.37885 * 119.99817 * 84.88672 * 9 8 7 12 12 N 1.31514 * 120.00107 * 353.91350 * 11 9 8 13 13 Si 1.86796 * 119.99747 * 173.90693 * 11 9 8 14 14 H 1.48504 * 109.46702 * 90.00426 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00281 * 13 11 9 16 16 H 1.48497 * 109.47727 * 330.00821 * 13 11 9 17 17 C 1.52994 * 117.50287 * 254.22768 * 8 7 6 18 18 C 1.52993 * 117.50002 * 185.60336 * 8 7 6 19 19 C 1.39529 * 119.79467 * 0.25332 * 5 4 3 20 20 N 1.40005 * 120.09554 * 179.75165 * 19 5 4 21 21 C 1.38288 * 119.89530 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47006 * 90.00435 * 1 2 3 23 23 H 1.08997 * 109.47358 * 210.00567 * 1 2 3 24 24 H 1.09003 * 109.47179 * 330.00894 * 1 2 3 25 25 H 1.08002 * 119.90363 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.00513 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.46966 * 60.00014 * 7 6 5 28 28 H 1.08993 * 109.47351 * 300.00003 * 7 6 5 29 29 H 0.97000 * 119.99830 * 175.00944 * 12 11 9 30 30 H 1.09005 * 117.49900 * 0.02562 * 17 8 7 31 31 H 1.09002 * 117.50512 * 145.02055 * 17 8 7 32 32 H 1.09004 * 117.50005 * 214.98600 * 18 8 7 33 33 H 1.09004 * 117.49958 * 359.97438 * 18 8 7 34 34 H 0.97003 * 120.00163 * 359.97438 * 20 19 5 35 35 H 0.97003 * 119.99764 * 180.02562 * 20 19 5 36 36 H 1.07996 * 120.00171 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.1986 0.0000 4 6 3.5786 1.2058 -0.0005 5 6 4.2784 0.0079 -0.0005 6 16 6.0404 0.0138 -0.0019 7 6 6.4426 1.7827 -0.0038 8 6 7.9623 1.9602 -0.0045 9 6 8.7284 0.9991 -0.8766 10 1 9.1441 0.0977 -0.4512 11 6 8.8987 1.2708 -2.2176 12 7 8.2935 2.3041 -2.7613 13 14 9.9893 0.1713 -3.2621 14 1 9.1745 -0.9263 -3.8425 15 1 10.5945 0.9709 -4.3574 16 1 11.0657 -0.4051 -2.4170 17 6 8.6216 2.4098 1.3008 18 6 8.5073 3.3837 0.1264 19 6 3.5826 -1.2015 -0.0053 20 7 4.2825 -2.4141 -0.0106 21 6 2.1962 -1.1989 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 1.6530 2.1321 -0.0004 26 1 4.1138 2.1439 -0.0010 27 1 6.0228 2.2517 0.8861 28 1 6.0214 2.2501 -0.8938 29 1 8.4697 2.5380 -3.6860 30 1 7.9728 2.5788 2.1603 31 1 9.6099 2.0105 1.5292 32 1 9.4203 3.6251 -0.4180 33 1 7.7832 4.1939 0.2126 34 1 5.2525 -2.4142 -0.0113 35 1 3.7973 -3.2540 -0.0143 36 1 1.6545 -2.1332 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = 20.889223 kcal Electronic energy + Delta-G solvation = -17114.051802 eV Core-core repulsion = 14495.629775 eV Total energy + Delta-G solvation = -2618.422027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18708 -38.46075 -35.67460 -34.00041 -33.28197 -29.73017 -29.44138 -27.84301 -27.26155 -23.33073 -22.94414 -22.25940 -21.12612 -18.61583 -17.94510 -17.67233 -17.00687 -16.60979 -15.83759 -15.57063 -15.18323 -15.04015 -14.80586 -14.55788 -14.34364 -13.93687 -13.44993 -13.28346 -13.02681 -12.96515 -12.82720 -12.52093 -12.36963 -12.05100 -11.89631 -11.57792 -11.38950 -10.96857 -10.69267 -10.46816 -10.20485 -9.88919 -8.82891 -8.11188 -7.75247 -6.19627 0.41781 0.72025 0.91375 1.40505 1.43212 1.51301 1.94334 2.44209 2.89355 3.06095 3.20201 3.44937 3.95583 4.10338 4.18976 4.35066 4.49721 4.52438 4.60760 4.64852 4.67114 4.83774 4.92126 4.93679 4.98775 5.10221 5.20239 5.27187 5.28239 5.47430 5.51421 5.61001 5.77232 5.79310 6.04347 6.35813 6.56203 6.82919 7.00416 7.47853 8.97908 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.005762 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.539988 B = 4858.258248 C = 5316.358333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.170 4.170 4 C -0.105 4.105 5 C -0.195 4.195 6 S -0.114 6.114 7 C -0.029 4.029 8 C 0.022 3.978 9 C -0.492 4.492 10 H 0.051 0.949 11 C 0.036 3.964 12 N -0.903 5.903 13 Si 0.939 3.061 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.268 1.268 17 C -0.183 4.183 18 C -0.151 4.151 19 C 0.222 3.778 20 N -0.867 5.867 21 C -0.190 4.190 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.135 0.865 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.398 0.602 35 H 0.409 0.591 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -5.325 5.808 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.191 4.191 4 C -0.130 4.130 5 C -0.312 4.312 6 S 0.131 5.869 7 C -0.178 4.178 8 C 0.020 3.980 9 C -0.531 4.531 10 H 0.070 0.930 11 C -0.165 4.165 12 N -0.541 5.541 13 Si 0.765 3.235 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.192 1.192 17 C -0.220 4.220 18 C -0.191 4.191 19 C 0.112 3.888 20 N -0.408 5.408 21 C -0.214 4.214 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.227 0.773 35 H 0.240 0.760 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.232 -6.154 5.624 14.803 hybrid contribution 0.333 0.669 -0.922 1.187 sum -11.899 -5.485 4.703 13.920 Atomic orbital electron populations 1.20801 0.88674 1.03755 1.03065 1.20008 0.97438 0.91860 0.96536 1.20922 0.92680 0.98778 1.06750 1.21068 0.95647 0.95790 1.00456 1.21836 0.98527 0.95975 1.14830 1.85211 0.96555 1.12942 1.92216 1.22989 1.00328 0.93000 1.01478 1.18616 0.88526 0.95071 0.95746 1.20458 1.33846 1.05952 0.92847 0.93039 1.25506 0.96153 0.96406 0.98428 1.70095 1.41459 1.28785 1.13715 0.85855 0.79547 0.79279 0.78795 1.20593 1.20960 1.19248 1.23084 1.01935 1.05145 0.91874 1.22473 1.01766 0.93429 1.01420 1.17495 0.91712 0.85118 0.94523 1.42523 1.09164 1.04661 1.84470 1.20640 0.90584 0.99370 1.10847 0.90358 0.90239 0.90607 0.84725 0.87218 0.91449 0.92603 0.93226 0.89087 0.90062 0.91748 0.90612 0.77282 0.75991 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.23 0.71 -1.05 16 2 C -0.05 -1.39 5.88 -19.85 -0.12 -1.50 16 3 C -0.17 -4.94 9.69 22.28 0.22 -4.72 16 4 C -0.10 -3.74 9.36 22.39 0.21 -3.53 16 5 C -0.19 -7.37 6.12 22.70 0.14 -7.23 16 6 S -0.11 -4.90 19.30 -56.49 -1.09 -5.99 16 7 C -0.03 -1.32 4.45 71.98 0.32 -1.00 16 8 C 0.02 1.06 1.65 -52.93 -0.09 0.98 16 9 C -0.49 -26.42 7.55 25.60 0.19 -26.23 16 10 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 11 C 0.04 1.96 5.39 84.66 0.46 2.42 16 12 N -0.90 -51.27 12.93 21.45 0.28 -50.99 16 13 Si 0.94 43.63 29.54 68.60 2.03 45.65 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C -0.18 -7.69 9.88 30.59 0.30 -7.39 16 18 C -0.15 -6.94 9.46 30.59 0.29 -6.65 16 19 C 0.22 7.10 6.76 38.24 0.26 7.36 16 20 N -0.87 -23.56 9.04 -50.94 -0.46 -24.02 16 21 C -0.19 -4.99 9.54 22.38 0.21 -4.78 16 22 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 24 H 0.08 1.09 8.08 -2.39 -0.02 1.08 16 25 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 26 H 0.11 4.03 5.88 -2.91 -0.02 4.02 16 27 H 0.07 2.76 7.55 -2.39 -0.02 2.74 16 28 H 0.06 2.79 7.75 -2.39 -0.02 2.77 16 29 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 30 H 0.09 3.35 8.08 -2.38 -0.02 3.33 16 31 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.06 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 34 H 0.40 11.83 7.38 -92.71 -0.68 11.15 16 35 H 0.41 8.08 8.85 -92.71 -0.82 7.26 16 36 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -61.50 314.34 3.45 -58.06 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.41 Total: 30.61 kcal Atomic # 6 Polarization: -56.43 SS G_CDS: 3.11 Total: -53.32 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -0.18 Total: -75.01 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -1.09 Total: -5.99 kcal Total: -61.50 3.45 -58.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.945 kcal (2) G-P(sol) polarization free energy of solvation -61.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds