Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47323 * 94.99786 * 3 2 1 5 5 H 1.48496 * 109.47018 * 215.00083 * 3 2 1 6 6 H 1.48504 * 109.47099 * 334.99922 * 3 2 1 7 7 C 1.37869 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 188.46965 * 7 2 1 9 9 C 1.50698 * 120.00376 * 8.47126 * 7 2 1 10 10 C 1.53002 * 115.54766 * 35.89762 * 9 7 2 11 11 N 1.46895 * 109.47524 * 53.36183 * 10 9 7 12 12 C 1.46888 * 111.00476 * 197.96433 * 11 10 9 13 13 C 1.53002 * 109.47364 * 170.25945 * 12 11 10 14 14 F 1.39895 * 109.47312 * 68.44401 * 13 12 11 15 15 F 1.39907 * 109.47221 * 188.44225 * 13 12 11 16 16 F 1.39897 * 109.47243 * 308.44140 * 13 12 11 17 17 C 1.46901 * 110.99970 * 74.00625 * 11 10 9 18 18 C 1.53001 * 117.50125 * 275.26951 * 17 11 10 19 19 C 1.52996 * 117.49908 * 206.64545 * 17 11 10 20 20 C 1.52997 * 117.50223 * 250.23036 * 9 7 2 21 21 C 1.53002 * 117.50401 * 181.56787 * 9 7 2 22 22 H 0.97005 * 120.00099 * 354.99819 * 1 2 3 23 23 H 1.09002 * 109.46914 * 173.36659 * 10 9 7 24 24 H 1.09006 * 109.47194 * 293.36325 * 10 9 7 25 25 H 1.09005 * 109.47503 * 290.25805 * 12 11 10 26 26 H 1.09002 * 109.47672 * 50.25821 * 12 11 10 27 27 H 1.08998 * 115.54634 * 60.97445 * 17 11 10 28 28 H 1.09004 * 117.49506 * 359.97438 * 18 17 11 29 29 H 1.08996 * 117.50001 * 145.01652 * 18 17 11 30 30 H 1.09008 * 117.49523 * 214.97996 * 19 17 11 31 31 H 1.08998 * 117.50213 * 359.97438 * 19 17 11 32 32 H 1.09001 * 117.49822 * 359.97438 * 20 9 7 33 33 H 1.08998 * 117.50605 * 145.01418 * 20 9 7 34 34 H 1.09000 * 117.49694 * 214.98023 * 21 9 7 35 35 H 1.08996 * 117.49316 * 359.97389 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 1.3947 5 1 3.4898 1.4730 -0.8030 6 1 1.3977 2.6809 -0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0757 -1.1990 0.1383 9 6 1.2634 -2.4921 -0.1911 10 6 0.0790 -2.4391 -1.1583 11 7 0.5206 -1.8811 -2.4433 12 6 -0.6249 -1.4194 -3.2384 13 6 -0.1211 -0.6312 -4.4491 14 9 0.5290 -1.4991 -5.3329 15 9 -1.2049 -0.0302 -5.0983 16 9 0.7733 0.3566 -4.0231 17 6 1.3228 -2.8569 -3.1932 18 6 2.8165 -2.9393 -2.8721 19 6 2.3502 -2.3118 -4.1873 20 6 1.1484 -3.4249 1.0161 21 6 2.0797 -3.7853 -0.1440 22 1 -0.4850 0.8369 0.0732 23 1 -0.3087 -3.4460 -1.3134 24 1 -0.7049 -1.8086 -0.7386 25 1 -1.2011 -2.2797 -3.5792 26 1 -1.2580 -0.7780 -2.6252 27 1 0.8120 -3.7836 -3.4545 28 1 3.2040 -2.2691 -2.1047 29 1 3.2886 -3.9205 -2.9220 30 1 2.5156 -2.8803 -5.1026 31 1 2.4306 -1.2293 -4.2853 32 1 1.6092 -3.0999 1.9490 33 1 0.2292 -4.0011 1.1213 34 1 1.7727 -4.5984 -0.8018 35 1 3.1528 -3.6971 0.0252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -80.970611 kcal Electronic energy + Delta-G solvation = -21960.125499 eV Core-core repulsion = 18352.676887 eV Total energy + Delta-G solvation = -3607.448612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.55933 -47.15564 -46.89061 -38.18979 -35.73789 -33.59347 -31.96775 -28.59534 -25.52672 -24.25039 -22.75856 -21.95057 -20.77980 -20.06324 -18.96276 -17.97103 -17.74662 -16.90963 -15.87697 -15.05699 -14.78682 -14.42857 -14.21086 -13.87232 -13.65236 -13.53656 -13.46230 -13.24999 -13.11975 -12.90388 -12.15587 -11.96922 -11.43322 -11.28092 -11.01406 -10.89776 -10.72577 -10.51996 -10.36639 -10.11743 -9.56060 -9.53014 -9.17704 -8.95389 -8.58088 -7.97318 -7.50905 -5.90897 -3.91697 3.30862 3.37329 3.45167 3.49627 4.18276 4.43290 4.49573 4.51160 4.65742 4.99702 5.17004 5.57539 5.59581 5.64718 5.74301 5.88108 5.91370 6.18432 6.19423 6.28147 6.38039 6.58619 6.70387 6.71817 6.75099 6.93383 7.04479 7.13423 7.35544 7.49984 7.86534 7.98178 8.07418 8.54363 9.01202 9.68897 11.12222 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.010976 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.761543 B = 2550.485073 C = 3277.721543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.468 4.468 8 H 0.054 0.946 9 C 0.072 3.928 10 C 0.110 3.890 11 N -0.464 5.464 12 C 0.021 3.979 13 C 0.453 3.547 14 F -0.184 7.184 15 F -0.197 7.197 16 F -0.169 7.169 17 C -0.002 4.002 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.210 4.210 21 C -0.207 4.207 22 H 0.257 0.743 23 H -0.007 1.007 24 H 0.118 0.882 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 -3.731 -7.399 8.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.112 4.112 3 Si 0.716 3.284 4 H -0.213 1.213 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.071 3.929 10 C -0.015 4.015 11 N -0.187 5.187 12 C -0.109 4.109 13 C 0.398 3.602 14 F -0.165 7.165 15 F -0.179 7.179 16 F -0.150 7.150 17 C -0.111 4.111 18 C -0.186 4.186 19 C -0.205 4.205 20 C -0.249 4.249 21 C -0.244 4.244 22 H 0.067 0.933 23 H 0.011 0.989 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.191 -3.161 -7.392 8.127 hybrid contribution -0.010 0.198 -0.326 0.382 sum -1.201 -2.963 -7.718 8.354 Atomic orbital electron populations 1.69728 1.06003 1.26193 1.50199 1.24678 0.94553 0.98351 0.93606 0.86695 0.80219 0.83890 0.77623 1.21266 1.19943 1.21276 1.20245 0.92810 0.88814 1.48619 0.92828 1.18804 0.93416 0.88764 0.91879 1.21761 0.99354 0.94243 0.86182 1.61423 1.17454 1.37440 1.02378 1.23086 0.95369 0.99575 0.92911 1.20730 0.75387 0.78992 0.85086 1.93164 1.81863 1.69459 1.72026 1.93125 1.55922 1.85082 1.83739 1.93196 1.68834 1.63284 1.89700 1.22404 0.91734 0.95066 1.01877 1.23114 0.94786 1.01552 0.99167 1.23134 1.03353 1.01131 0.92912 1.23020 0.99539 1.07703 0.94643 1.22891 0.96697 1.02108 1.02697 0.93286 0.98866 0.86417 0.92327 0.86242 0.91342 0.86322 0.90336 0.89938 0.88658 0.90512 0.92159 0.91961 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.90 10.71 55.43 0.59 -22.31 16 2 C 0.09 2.35 5.18 -17.82 -0.09 2.26 16 3 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.47 -12.02 7.75 -34.44 -0.27 -12.28 16 8 H 0.05 1.41 7.83 -52.48 -0.41 1.00 16 9 C 0.07 1.66 1.15 -155.66 -0.18 1.48 16 10 C 0.11 2.39 4.05 -3.83 -0.02 2.38 16 11 N -0.46 -9.37 3.90 -226.65 -0.88 -10.26 16 12 C 0.02 0.37 5.07 -3.83 -0.02 0.35 16 13 C 0.45 7.96 2.86 37.16 0.11 8.06 16 14 F -0.18 -3.08 12.76 2.25 0.03 -3.05 16 15 F -0.20 -3.27 17.32 2.25 0.04 -3.23 16 16 F -0.17 -3.42 15.88 2.25 0.04 -3.38 16 17 C 0.00 -0.04 3.98 -67.71 -0.27 -0.30 16 18 C -0.15 -2.69 7.96 -26.73 -0.21 -2.90 16 19 C -0.17 -2.88 7.17 -26.73 -0.19 -3.07 16 20 C -0.21 -4.59 9.96 -26.69 -0.27 -4.85 16 21 C -0.21 -4.26 7.50 -26.69 -0.20 -4.46 16 22 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 23 H -0.01 -0.14 7.96 -51.93 -0.41 -0.55 16 24 H 0.12 2.79 5.67 -51.93 -0.29 2.49 16 25 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 26 H 0.12 2.20 7.85 -51.93 -0.41 1.79 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.12 2.50 6.59 -51.93 -0.34 2.16 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.25 8.13 -51.92 -0.42 0.82 16 31 H 0.10 1.80 6.20 -51.93 -0.32 1.48 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 289.58 15.07 4.36 4.36 Total: -1.00 -25.61 289.58 -7.16 -32.77 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.71 Total: 2.28 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.61 Total: -13.34 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.29 Total: -32.56 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 0.10 Total: -9.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.61 -7.16 -32.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.199 kcal (2) G-P(sol) polarization free energy of solvation -25.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds