Wall clock time and date at job start Mon Mar 30 2020 06:50:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86800 * 119.99901 * 2 1
4 4 H 1.48497 * 109.47323 * 94.99786 * 3 2 1
5 5 H 1.48496 * 109.47018 * 215.00083 * 3 2 1
6 6 H 1.48504 * 109.47099 * 334.99922 * 3 2 1
7 7 C 1.37869 * 120.00035 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99815 * 188.46965 * 7 2 1
9 9 C 1.50698 * 120.00376 * 8.47126 * 7 2 1
10 10 C 1.53002 * 115.54766 * 35.89762 * 9 7 2
11 11 N 1.46895 * 109.47524 * 53.36183 * 10 9 7
12 12 C 1.46888 * 111.00476 * 197.96433 * 11 10 9
13 13 C 1.53002 * 109.47364 * 170.25945 * 12 11 10
14 14 F 1.39895 * 109.47312 * 68.44401 * 13 12 11
15 15 F 1.39907 * 109.47221 * 188.44225 * 13 12 11
16 16 F 1.39897 * 109.47243 * 308.44140 * 13 12 11
17 17 C 1.46901 * 110.99970 * 74.00625 * 11 10 9
18 18 C 1.53001 * 117.50125 * 275.26951 * 17 11 10
19 19 C 1.52996 * 117.49908 * 206.64545 * 17 11 10
20 20 C 1.52997 * 117.50223 * 250.23036 * 9 7 2
21 21 C 1.53002 * 117.50401 * 181.56787 * 9 7 2
22 22 H 0.97005 * 120.00099 * 354.99819 * 1 2 3
23 23 H 1.09002 * 109.46914 * 173.36659 * 10 9 7
24 24 H 1.09006 * 109.47194 * 293.36325 * 10 9 7
25 25 H 1.09005 * 109.47503 * 290.25805 * 12 11 10
26 26 H 1.09002 * 109.47672 * 50.25821 * 12 11 10
27 27 H 1.08998 * 115.54634 * 60.97445 * 17 11 10
28 28 H 1.09004 * 117.49506 * 359.97438 * 18 17 11
29 29 H 1.08996 * 117.50001 * 145.01652 * 18 17 11
30 30 H 1.09008 * 117.49523 * 214.97996 * 19 17 11
31 31 H 1.08998 * 117.50213 * 359.97438 * 19 17 11
32 32 H 1.09001 * 117.49822 * 359.97438 * 20 9 7
33 33 H 1.08998 * 117.50605 * 145.01418 * 20 9 7
34 34 H 1.09000 * 117.49694 * 214.98023 * 21 9 7
35 35 H 1.08996 * 117.49316 * 359.97389 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.6022 1.9855 1.3947
5 1 3.4898 1.4730 -0.8030
6 1 1.3977 2.6809 -0.5917
7 6 2.0045 -1.1940 0.0005
8 1 3.0757 -1.1990 0.1383
9 6 1.2634 -2.4921 -0.1911
10 6 0.0790 -2.4391 -1.1583
11 7 0.5206 -1.8811 -2.4433
12 6 -0.6249 -1.4194 -3.2384
13 6 -0.1211 -0.6312 -4.4491
14 9 0.5290 -1.4991 -5.3329
15 9 -1.2049 -0.0302 -5.0983
16 9 0.7733 0.3566 -4.0231
17 6 1.3228 -2.8569 -3.1932
18 6 2.8165 -2.9393 -2.8721
19 6 2.3502 -2.3118 -4.1873
20 6 1.1484 -3.4249 1.0161
21 6 2.0797 -3.7853 -0.1440
22 1 -0.4850 0.8369 0.0732
23 1 -0.3087 -3.4460 -1.3134
24 1 -0.7049 -1.8086 -0.7386
25 1 -1.2011 -2.2797 -3.5792
26 1 -1.2580 -0.7780 -2.6252
27 1 0.8120 -3.7836 -3.4545
28 1 3.2040 -2.2691 -2.1047
29 1 3.2886 -3.9205 -2.9220
30 1 2.5156 -2.8803 -5.1026
31 1 2.4306 -1.2293 -4.2853
32 1 1.6092 -3.0999 1.9490
33 1 0.2292 -4.0011 1.1213
34 1 1.7727 -4.5984 -0.8018
35 1 3.1528 -3.6971 0.0252
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000088259434.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:03
Heat of formation + Delta-G solvation = -80.970611 kcal
Electronic energy + Delta-G solvation = -21960.125499 eV
Core-core repulsion = 18352.676887 eV
Total energy + Delta-G solvation = -3607.448612 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.119 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-49.55933 -47.15564 -46.89061 -38.18979 -35.73789 -33.59347 -31.96775 -28.59534
-25.52672 -24.25039 -22.75856 -21.95057 -20.77980 -20.06324 -18.96276 -17.97103
-17.74662 -16.90963 -15.87697 -15.05699 -14.78682 -14.42857 -14.21086 -13.87232
-13.65236 -13.53656 -13.46230 -13.24999 -13.11975 -12.90388 -12.15587 -11.96922
-11.43322 -11.28092 -11.01406 -10.89776 -10.72577 -10.51996 -10.36639 -10.11743
-9.56060 -9.53014 -9.17704 -8.95389 -8.58088 -7.97318 -7.50905 -5.90897
-3.91697 3.30862 3.37329 3.45167 3.49627 4.18276 4.43290 4.49573
4.51160 4.65742 4.99702 5.17004 5.57539 5.59581 5.64718 5.74301
5.88108 5.91370 6.18432 6.19423 6.28147 6.38039 6.58619 6.70387
6.71817 6.75099 6.93383 7.04479 7.13423 7.35544 7.49984 7.86534
7.98178 8.07418 8.54363 9.01202 9.68897 11.12222
Molecular weight = 263.12amu
Principal moments of inertia in cm(-1)
A = 0.017357 B = 0.010976 C = 0.008540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.761543 B = 2550.485073 C = 3277.721543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.091 3.909
3 Si 0.887 3.113
4 H -0.286 1.286
5 H -0.274 1.274
6 H -0.287 1.287
7 C -0.468 4.468
8 H 0.054 0.946
9 C 0.072 3.928
10 C 0.110 3.890
11 N -0.464 5.464
12 C 0.021 3.979
13 C 0.453 3.547
14 F -0.184 7.184
15 F -0.197 7.197
16 F -0.169 7.169
17 C -0.002 4.002
18 C -0.149 4.149
19 C -0.168 4.168
20 C -0.210 4.210
21 C -0.207 4.207
22 H 0.257 0.743
23 H -0.007 1.007
24 H 0.118 0.882
25 H 0.059 0.941
26 H 0.119 0.881
27 H 0.069 0.931
28 H 0.119 0.881
29 H 0.078 0.922
30 H 0.082 0.918
31 H 0.095 0.905
32 H 0.076 0.924
33 H 0.060 0.940
34 H 0.062 0.938
35 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.335 -3.731 -7.399 8.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.112 4.112
3 Si 0.716 3.284
4 H -0.213 1.213
5 H -0.199 1.199
6 H -0.213 1.213
7 C -0.505 4.505
8 H 0.072 0.928
9 C 0.071 3.929
10 C -0.015 4.015
11 N -0.187 5.187
12 C -0.109 4.109
13 C 0.398 3.602
14 F -0.165 7.165
15 F -0.179 7.179
16 F -0.150 7.150
17 C -0.111 4.111
18 C -0.186 4.186
19 C -0.205 4.205
20 C -0.249 4.249
21 C -0.244 4.244
22 H 0.067 0.933
23 H 0.011 0.989
24 H 0.136 0.864
25 H 0.077 0.923
26 H 0.138 0.862
27 H 0.087 0.913
28 H 0.137 0.863
29 H 0.097 0.903
30 H 0.101 0.899
31 H 0.113 0.887
32 H 0.095 0.905
33 H 0.078 0.922
34 H 0.080 0.920
35 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -1.191 -3.161 -7.392 8.127
hybrid contribution -0.010 0.198 -0.326 0.382
sum -1.201 -2.963 -7.718 8.354
Atomic orbital electron populations
1.69728 1.06003 1.26193 1.50199 1.24678 0.94553 0.98351 0.93606
0.86695 0.80219 0.83890 0.77623 1.21266 1.19943 1.21276 1.20245
0.92810 0.88814 1.48619 0.92828 1.18804 0.93416 0.88764 0.91879
1.21761 0.99354 0.94243 0.86182 1.61423 1.17454 1.37440 1.02378
1.23086 0.95369 0.99575 0.92911 1.20730 0.75387 0.78992 0.85086
1.93164 1.81863 1.69459 1.72026 1.93125 1.55922 1.85082 1.83739
1.93196 1.68834 1.63284 1.89700 1.22404 0.91734 0.95066 1.01877
1.23114 0.94786 1.01552 0.99167 1.23134 1.03353 1.01131 0.92912
1.23020 0.99539 1.07703 0.94643 1.22891 0.96697 1.02108 1.02697
0.93286 0.98866 0.86417 0.92327 0.86242 0.91342 0.86322 0.90336
0.89938 0.88658 0.90512 0.92159 0.91961 0.90938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -22.90 10.71 55.43 0.59 -22.31 16
2 C 0.09 2.35 5.18 -17.82 -0.09 2.26 16
3 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16
4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
7 C -0.47 -12.02 7.75 -34.44 -0.27 -12.28 16
8 H 0.05 1.41 7.83 -52.48 -0.41 1.00 16
9 C 0.07 1.66 1.15 -155.66 -0.18 1.48 16
10 C 0.11 2.39 4.05 -3.83 -0.02 2.38 16
11 N -0.46 -9.37 3.90 -226.65 -0.88 -10.26 16
12 C 0.02 0.37 5.07 -3.83 -0.02 0.35 16
13 C 0.45 7.96 2.86 37.16 0.11 8.06 16
14 F -0.18 -3.08 12.76 2.25 0.03 -3.05 16
15 F -0.20 -3.27 17.32 2.25 0.04 -3.23 16
16 F -0.17 -3.42 15.88 2.25 0.04 -3.38 16
17 C 0.00 -0.04 3.98 -67.71 -0.27 -0.30 16
18 C -0.15 -2.69 7.96 -26.73 -0.21 -2.90 16
19 C -0.17 -2.88 7.17 -26.73 -0.19 -3.07 16
20 C -0.21 -4.59 9.96 -26.69 -0.27 -4.85 16
21 C -0.21 -4.26 7.50 -26.69 -0.20 -4.46 16
22 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16
23 H -0.01 -0.14 7.96 -51.93 -0.41 -0.55 16
24 H 0.12 2.79 5.67 -51.93 -0.29 2.49 16
25 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16
26 H 0.12 2.20 7.85 -51.93 -0.41 1.79 16
27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.12 2.50 6.59 -51.93 -0.34 2.16 16
29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
30 H 0.08 1.25 8.13 -51.92 -0.42 0.82 16
31 H 0.10 1.80 6.20 -51.93 -0.32 1.48 16
32 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
LS Contribution 289.58 15.07 4.36 4.36
Total: -1.00 -25.61 289.58 -7.16 -32.77
By element:
Atomic # 1 Polarization: 6.99 SS G_CDS: -4.71 Total: 2.28 kcal
Atomic # 6 Polarization: -11.73 SS G_CDS: -1.61 Total: -13.34 kcal
Atomic # 7 Polarization: -32.27 SS G_CDS: -0.29 Total: -32.56 kcal
Atomic # 9 Polarization: -9.77 SS G_CDS: 0.10 Total: -9.67 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -25.61 -7.16 -32.77 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088259434.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.199 kcal
(2) G-P(sol) polarization free energy of solvation -25.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds