Wall clock time and date at job start Mon Mar 30 2020 06:50:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86800 * 119.99901 * 2 1
4 4 H 1.48497 * 109.47323 * 94.99786 * 3 2 1
5 5 H 1.48496 * 109.47018 * 215.00083 * 3 2 1
6 6 H 1.48504 * 109.47099 * 334.99922 * 3 2 1
7 7 C 1.37869 * 120.00035 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99815 * 188.46965 * 7 2 1
9 9 C 1.50698 * 120.00376 * 8.47126 * 7 2 1
10 10 C 1.53002 * 115.54766 * 35.89762 * 9 7 2
11 11 N 1.46895 * 109.47524 * 53.36183 * 10 9 7
12 12 C 1.46888 * 111.00476 * 197.96433 * 11 10 9
13 13 C 1.53002 * 109.47364 * 170.25945 * 12 11 10
14 14 F 1.39895 * 109.47312 * 68.44401 * 13 12 11
15 15 F 1.39907 * 109.47221 * 188.44225 * 13 12 11
16 16 F 1.39897 * 109.47243 * 308.44140 * 13 12 11
17 17 C 1.46901 * 110.99970 * 74.00625 * 11 10 9
18 18 C 1.53001 * 117.50125 * 275.26951 * 17 11 10
19 19 C 1.52996 * 117.49908 * 206.64545 * 17 11 10
20 20 C 1.52997 * 117.50223 * 250.23036 * 9 7 2
21 21 C 1.53002 * 117.50401 * 181.56787 * 9 7 2
22 22 H 0.97005 * 120.00099 * 354.99819 * 1 2 3
23 23 H 1.09002 * 109.46914 * 173.36659 * 10 9 7
24 24 H 1.09006 * 109.47194 * 293.36325 * 10 9 7
25 25 H 1.09005 * 109.47503 * 290.25805 * 12 11 10
26 26 H 1.09002 * 109.47672 * 50.25821 * 12 11 10
27 27 H 1.08998 * 115.54634 * 60.97445 * 17 11 10
28 28 H 1.09004 * 117.49506 * 359.97438 * 18 17 11
29 29 H 1.08996 * 117.50001 * 145.01652 * 18 17 11
30 30 H 1.09008 * 117.49523 * 214.97996 * 19 17 11
31 31 H 1.08998 * 117.50213 * 359.97438 * 19 17 11
32 32 H 1.09001 * 117.49822 * 359.97438 * 20 9 7
33 33 H 1.08998 * 117.50605 * 145.01418 * 20 9 7
34 34 H 1.09000 * 117.49694 * 214.98023 * 21 9 7
35 35 H 1.08996 * 117.49316 * 359.97389 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.6022 1.9855 1.3947
5 1 3.4898 1.4730 -0.8030
6 1 1.3977 2.6809 -0.5917
7 6 2.0045 -1.1940 0.0005
8 1 3.0757 -1.1990 0.1383
9 6 1.2634 -2.4921 -0.1911
10 6 0.0790 -2.4391 -1.1583
11 7 0.5206 -1.8811 -2.4433
12 6 -0.6249 -1.4194 -3.2384
13 6 -0.1211 -0.6312 -4.4491
14 9 0.5290 -1.4991 -5.3329
15 9 -1.2049 -0.0302 -5.0983
16 9 0.7733 0.3566 -4.0231
17 6 1.3228 -2.8569 -3.1932
18 6 2.8165 -2.9393 -2.8721
19 6 2.3502 -2.3118 -4.1873
20 6 1.1484 -3.4249 1.0161
21 6 2.0797 -3.7853 -0.1440
22 1 -0.4850 0.8369 0.0732
23 1 -0.3087 -3.4460 -1.3134
24 1 -0.7049 -1.8086 -0.7386
25 1 -1.2011 -2.2797 -3.5792
26 1 -1.2580 -0.7780 -2.6252
27 1 0.8120 -3.7836 -3.4545
28 1 3.2040 -2.2691 -2.1047
29 1 3.2886 -3.9205 -2.9220
30 1 2.5156 -2.8803 -5.1026
31 1 2.4306 -1.2293 -4.2853
32 1 1.6092 -3.0999 1.9490
33 1 0.2292 -4.0011 1.1213
34 1 1.7727 -4.5984 -0.8018
35 1 3.1528 -3.6971 0.0252
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000088259434.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:03
Heat of formation + Delta-G solvation = -93.441780 kcal
Electronic energy + Delta-G solvation = -21960.666290 eV
Core-core repulsion = 18352.676887 eV
Total energy + Delta-G solvation = -3607.989403 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.119 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-50.96501 -48.51673 -48.36165 -39.74110 -37.36797 -35.05547 -33.91634 -30.09480
-27.44129 -25.87936 -24.17547 -23.43996 -22.36968 -21.53637 -20.73870 -19.37431
-19.18270 -18.42266 -17.64119 -16.67512 -16.35867 -16.04096 -15.73993 -15.37065
-15.14585 -15.08640 -14.93429 -14.75845 -14.59528 -14.52615 -13.58405 -13.55088
-13.14919 -13.04947 -12.80120 -12.47655 -12.35888 -12.32296 -11.98945 -11.88861
-11.22289 -11.01613 -10.87859 -10.66690 -10.34340 -9.80423 -8.99215 -7.87218
-5.90861 1.42984 1.49608 1.54654 1.90409 2.53470 2.72805 3.03900
3.11076 3.24756 3.29072 3.60338 3.85349 4.20847 4.22510 4.34235
4.39673 4.46357 4.57945 4.64953 4.83321 4.93355 4.98823 5.02190
5.07829 5.23188 5.30461 5.38638 5.61806 5.65866 5.72938 6.09009
6.32155 6.44905 6.67389 7.05351 7.69325 9.12725
Molecular weight = 263.12amu
Principal moments of inertia in cm(-1)
A = 0.017357 B = 0.010976 C = 0.008540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.761543 B = 2550.485073 C = 3277.721543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.061 3.939
3 Si 0.922 3.078
4 H -0.284 1.284
5 H -0.281 1.281
6 H -0.290 1.290
7 C -0.475 4.475
8 H 0.036 0.964
9 C 0.048 3.952
10 C 0.122 3.878
11 N -0.487 5.487
12 C 0.023 3.977
13 C 0.458 3.542
14 F -0.176 7.176
15 F -0.190 7.190
16 F -0.188 7.188
17 C -0.006 4.006
18 C -0.151 4.151
19 C -0.155 4.155
20 C -0.214 4.214
21 C -0.180 4.180
22 H 0.254 0.746
23 H 0.007 0.993
24 H 0.094 0.906
25 H 0.087 0.913
26 H 0.108 0.892
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.102 0.898
30 H 0.109 0.891
31 H 0.074 0.926
32 H 0.065 0.935
33 H 0.074 0.926
34 H 0.082 0.918
35 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.520 -5.083 -8.448 9.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.140 4.140
3 Si 0.751 3.249
4 H -0.210 1.210
5 H -0.207 1.207
6 H -0.216 1.216
7 C -0.513 4.513
8 H 0.054 0.946
9 C 0.048 3.952
10 C -0.004 4.004
11 N -0.210 5.210
12 C -0.107 4.107
13 C 0.403 3.597
14 F -0.158 7.158
15 F -0.172 7.172
16 F -0.170 7.170
17 C -0.115 4.115
18 C -0.188 4.188
19 C -0.192 4.192
20 C -0.252 4.252
21 C -0.217 4.217
22 H 0.064 0.936
23 H 0.025 0.975
24 H 0.112 0.888
25 H 0.105 0.895
26 H 0.126 0.874
27 H 0.105 0.895
28 H 0.103 0.897
29 H 0.120 0.880
30 H 0.127 0.873
31 H 0.093 0.907
32 H 0.083 0.917
33 H 0.093 0.907
34 H 0.100 0.900
35 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -1.373 -4.512 -8.440 9.668
hybrid contribution 0.078 0.611 -0.008 0.616
sum -1.295 -3.901 -8.447 9.394
Atomic orbital electron populations
1.69820 1.06184 1.26119 1.50827 1.25035 0.95110 0.99747 0.94094
0.86155 0.79163 0.82241 0.77363 1.21025 1.20693 1.21604 1.20361
0.92169 0.90413 1.48326 0.94560 1.18858 0.94687 0.88518 0.93182
1.21470 0.97936 0.94392 0.86609 1.61259 1.18693 1.38442 1.02618
1.23070 0.94821 1.00294 0.92550 1.20659 0.75163 0.78598 0.85254
1.93169 1.81768 1.69086 1.71729 1.93137 1.55487 1.84999 1.83568
1.93161 1.69619 1.64190 1.89992 1.22511 0.91542 0.95431 1.02015
1.23013 0.94971 1.02077 0.98778 1.23105 1.02322 1.00219 0.93584
1.23021 1.00516 1.07545 0.94161 1.22813 0.96206 1.01018 1.01697
0.93590 0.97511 0.88771 0.89478 0.87355 0.89487 0.89745 0.87954
0.87252 0.90721 0.91675 0.90736 0.89957 0.91236
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -46.38 10.71 21.44 0.23 -46.15 16
2 C 0.06 3.18 5.18 84.65 0.44 3.62 16
3 Si 0.92 43.75 29.55 68.60 2.03 45.78 16
4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16
5 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16
6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
7 C -0.48 -24.52 7.75 25.60 0.20 -24.33 16
8 H 0.04 1.95 7.83 -2.91 -0.02 1.92 16
9 C 0.05 2.18 1.15 -52.93 -0.06 2.12 16
10 C 0.12 5.13 4.05 86.31 0.35 5.48 16
11 N -0.49 -18.96 3.90 -871.00 -3.40 -22.36 16
12 C 0.02 0.77 5.07 86.31 0.44 1.20 16
13 C 0.46 15.39 2.86 71.98 0.21 15.60 16
14 F -0.18 -5.48 12.76 44.97 0.57 -4.91 16
15 F -0.19 -6.00 17.32 44.97 0.78 -5.23 16
16 F -0.19 -7.54 15.88 44.97 0.71 -6.83 16
17 C -0.01 -0.22 3.98 44.91 0.18 -0.04 16
18 C -0.15 -5.14 7.96 30.60 0.24 -4.89 16
19 C -0.15 -4.95 7.17 30.59 0.22 -4.73 16
20 C -0.21 -9.03 9.96 30.62 0.30 -8.73 16
21 C -0.18 -7.06 7.50 30.62 0.23 -6.83 16
22 H 0.25 13.00 8.32 -92.70 -0.77 12.23 16
23 H 0.01 0.27 7.96 -2.39 -0.02 0.25 16
24 H 0.09 4.41 5.67 -2.38 -0.01 4.40 16
25 H 0.09 2.45 8.12 -2.38 -0.02 2.43 16
26 H 0.11 3.92 7.85 -2.39 -0.02 3.90 16
27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16
28 H 0.08 3.52 6.59 -2.38 -0.02 3.50 16
29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16
30 H 0.11 2.91 8.13 -2.38 -0.02 2.89 16
31 H 0.07 2.73 6.20 -2.39 -0.01 2.71 16
32 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16
33 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16
34 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16
35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16
Total: -1.00 -53.32 289.58 4.76 -48.56
By element:
Atomic # 1 Polarization: 11.57 SS G_CDS: 1.09 Total: 12.66 kcal
Atomic # 6 Polarization: -24.28 SS G_CDS: 2.74 Total: -21.53 kcal
Atomic # 7 Polarization: -65.34 SS G_CDS: -3.17 Total: -68.51 kcal
Atomic # 9 Polarization: -19.03 SS G_CDS: 2.07 Total: -16.96 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -53.32 4.76 -48.56 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088259434.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.878 kcal
(2) G-P(sol) polarization free energy of solvation -53.324 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds