Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47323 * 94.99786 * 3 2 1 5 5 H 1.48496 * 109.47018 * 215.00083 * 3 2 1 6 6 H 1.48504 * 109.47099 * 334.99922 * 3 2 1 7 7 C 1.37869 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 188.46965 * 7 2 1 9 9 C 1.50698 * 120.00376 * 8.47126 * 7 2 1 10 10 C 1.53002 * 115.54766 * 35.89762 * 9 7 2 11 11 N 1.46895 * 109.47524 * 53.36183 * 10 9 7 12 12 C 1.46888 * 111.00476 * 197.96433 * 11 10 9 13 13 C 1.53002 * 109.47364 * 170.25945 * 12 11 10 14 14 F 1.39895 * 109.47312 * 68.44401 * 13 12 11 15 15 F 1.39907 * 109.47221 * 188.44225 * 13 12 11 16 16 F 1.39897 * 109.47243 * 308.44140 * 13 12 11 17 17 C 1.46901 * 110.99970 * 74.00625 * 11 10 9 18 18 C 1.53001 * 117.50125 * 275.26951 * 17 11 10 19 19 C 1.52996 * 117.49908 * 206.64545 * 17 11 10 20 20 C 1.52997 * 117.50223 * 250.23036 * 9 7 2 21 21 C 1.53002 * 117.50401 * 181.56787 * 9 7 2 22 22 H 0.97005 * 120.00099 * 354.99819 * 1 2 3 23 23 H 1.09002 * 109.46914 * 173.36659 * 10 9 7 24 24 H 1.09006 * 109.47194 * 293.36325 * 10 9 7 25 25 H 1.09005 * 109.47503 * 290.25805 * 12 11 10 26 26 H 1.09002 * 109.47672 * 50.25821 * 12 11 10 27 27 H 1.08998 * 115.54634 * 60.97445 * 17 11 10 28 28 H 1.09004 * 117.49506 * 359.97438 * 18 17 11 29 29 H 1.08996 * 117.50001 * 145.01652 * 18 17 11 30 30 H 1.09008 * 117.49523 * 214.97996 * 19 17 11 31 31 H 1.08998 * 117.50213 * 359.97438 * 19 17 11 32 32 H 1.09001 * 117.49822 * 359.97438 * 20 9 7 33 33 H 1.08998 * 117.50605 * 145.01418 * 20 9 7 34 34 H 1.09000 * 117.49694 * 214.98023 * 21 9 7 35 35 H 1.08996 * 117.49316 * 359.97389 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 1.3947 5 1 3.4898 1.4730 -0.8030 6 1 1.3977 2.6809 -0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0757 -1.1990 0.1383 9 6 1.2634 -2.4921 -0.1911 10 6 0.0790 -2.4391 -1.1583 11 7 0.5206 -1.8811 -2.4433 12 6 -0.6249 -1.4194 -3.2384 13 6 -0.1211 -0.6312 -4.4491 14 9 0.5290 -1.4991 -5.3329 15 9 -1.2049 -0.0302 -5.0983 16 9 0.7733 0.3566 -4.0231 17 6 1.3228 -2.8569 -3.1932 18 6 2.8165 -2.9393 -2.8721 19 6 2.3502 -2.3118 -4.1873 20 6 1.1484 -3.4249 1.0161 21 6 2.0797 -3.7853 -0.1440 22 1 -0.4850 0.8369 0.0732 23 1 -0.3087 -3.4460 -1.3134 24 1 -0.7049 -1.8086 -0.7386 25 1 -1.2011 -2.2797 -3.5792 26 1 -1.2580 -0.7780 -2.6252 27 1 0.8120 -3.7836 -3.4545 28 1 3.2040 -2.2691 -2.1047 29 1 3.2886 -3.9205 -2.9220 30 1 2.5156 -2.8803 -5.1026 31 1 2.4306 -1.2293 -4.2853 32 1 1.6092 -3.0999 1.9490 33 1 0.2292 -4.0011 1.1213 34 1 1.7727 -4.5984 -0.8018 35 1 3.1528 -3.6971 0.0252 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -93.441780 kcal Electronic energy + Delta-G solvation = -21960.666290 eV Core-core repulsion = 18352.676887 eV Total energy + Delta-G solvation = -3607.989403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.96501 -48.51673 -48.36165 -39.74110 -37.36797 -35.05547 -33.91634 -30.09480 -27.44129 -25.87936 -24.17547 -23.43996 -22.36968 -21.53637 -20.73870 -19.37431 -19.18270 -18.42266 -17.64119 -16.67512 -16.35867 -16.04096 -15.73993 -15.37065 -15.14585 -15.08640 -14.93429 -14.75845 -14.59528 -14.52615 -13.58405 -13.55088 -13.14919 -13.04947 -12.80120 -12.47655 -12.35888 -12.32296 -11.98945 -11.88861 -11.22289 -11.01613 -10.87859 -10.66690 -10.34340 -9.80423 -8.99215 -7.87218 -5.90861 1.42984 1.49608 1.54654 1.90409 2.53470 2.72805 3.03900 3.11076 3.24756 3.29072 3.60338 3.85349 4.20847 4.22510 4.34235 4.39673 4.46357 4.57945 4.64953 4.83321 4.93355 4.98823 5.02190 5.07829 5.23188 5.30461 5.38638 5.61806 5.65866 5.72938 6.09009 6.32155 6.44905 6.67389 7.05351 7.69325 9.12725 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.010976 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.761543 B = 2550.485073 C = 3277.721543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.922 3.078 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.475 4.475 8 H 0.036 0.964 9 C 0.048 3.952 10 C 0.122 3.878 11 N -0.487 5.487 12 C 0.023 3.977 13 C 0.458 3.542 14 F -0.176 7.176 15 F -0.190 7.190 16 F -0.188 7.188 17 C -0.006 4.006 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.214 4.214 21 C -0.180 4.180 22 H 0.254 0.746 23 H 0.007 0.993 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -5.083 -8.448 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.751 3.249 4 H -0.210 1.210 5 H -0.207 1.207 6 H -0.216 1.216 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.004 4.004 11 N -0.210 5.210 12 C -0.107 4.107 13 C 0.403 3.597 14 F -0.158 7.158 15 F -0.172 7.172 16 F -0.170 7.170 17 C -0.115 4.115 18 C -0.188 4.188 19 C -0.192 4.192 20 C -0.252 4.252 21 C -0.217 4.217 22 H 0.064 0.936 23 H 0.025 0.975 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.373 -4.512 -8.440 9.668 hybrid contribution 0.078 0.611 -0.008 0.616 sum -1.295 -3.901 -8.447 9.394 Atomic orbital electron populations 1.69820 1.06184 1.26119 1.50827 1.25035 0.95110 0.99747 0.94094 0.86155 0.79163 0.82241 0.77363 1.21025 1.20693 1.21604 1.20361 0.92169 0.90413 1.48326 0.94560 1.18858 0.94687 0.88518 0.93182 1.21470 0.97936 0.94392 0.86609 1.61259 1.18693 1.38442 1.02618 1.23070 0.94821 1.00294 0.92550 1.20659 0.75163 0.78598 0.85254 1.93169 1.81768 1.69086 1.71729 1.93137 1.55487 1.84999 1.83568 1.93161 1.69619 1.64190 1.89992 1.22511 0.91542 0.95431 1.02015 1.23013 0.94971 1.02077 0.98778 1.23105 1.02322 1.00219 0.93584 1.23021 1.00516 1.07545 0.94161 1.22813 0.96206 1.01018 1.01697 0.93590 0.97511 0.88771 0.89478 0.87355 0.89487 0.89745 0.87954 0.87252 0.90721 0.91675 0.90736 0.89957 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.38 10.71 21.44 0.23 -46.15 16 2 C 0.06 3.18 5.18 84.65 0.44 3.62 16 3 Si 0.92 43.75 29.55 68.60 2.03 45.78 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.48 -24.52 7.75 25.60 0.20 -24.33 16 8 H 0.04 1.95 7.83 -2.91 -0.02 1.92 16 9 C 0.05 2.18 1.15 -52.93 -0.06 2.12 16 10 C 0.12 5.13 4.05 86.31 0.35 5.48 16 11 N -0.49 -18.96 3.90 -871.00 -3.40 -22.36 16 12 C 0.02 0.77 5.07 86.31 0.44 1.20 16 13 C 0.46 15.39 2.86 71.98 0.21 15.60 16 14 F -0.18 -5.48 12.76 44.97 0.57 -4.91 16 15 F -0.19 -6.00 17.32 44.97 0.78 -5.23 16 16 F -0.19 -7.54 15.88 44.97 0.71 -6.83 16 17 C -0.01 -0.22 3.98 44.91 0.18 -0.04 16 18 C -0.15 -5.14 7.96 30.60 0.24 -4.89 16 19 C -0.15 -4.95 7.17 30.59 0.22 -4.73 16 20 C -0.21 -9.03 9.96 30.62 0.30 -8.73 16 21 C -0.18 -7.06 7.50 30.62 0.23 -6.83 16 22 H 0.25 13.00 8.32 -92.70 -0.77 12.23 16 23 H 0.01 0.27 7.96 -2.39 -0.02 0.25 16 24 H 0.09 4.41 5.67 -2.38 -0.01 4.40 16 25 H 0.09 2.45 8.12 -2.38 -0.02 2.43 16 26 H 0.11 3.92 7.85 -2.39 -0.02 3.90 16 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.08 3.52 6.59 -2.38 -0.02 3.50 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.11 2.91 8.13 -2.38 -0.02 2.89 16 31 H 0.07 2.73 6.20 -2.39 -0.01 2.71 16 32 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -53.32 289.58 4.76 -48.56 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.09 Total: 12.66 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 2.74 Total: -21.53 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -3.17 Total: -68.51 kcal Atomic # 9 Polarization: -19.03 SS G_CDS: 2.07 Total: -16.96 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -53.32 4.76 -48.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.878 kcal (2) G-P(sol) polarization free energy of solvation -53.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds