Wall clock time and date at job start Mon Mar 30 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46893 * 110.99930 * 2 1 4 4 C 1.50706 * 109.47466 * 66.04363 * 3 2 1 5 5 H 1.07994 * 119.99621 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99862 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99444 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00314 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47231 * 90.00095 * 8 6 4 10 10 H 1.48501 * 109.46877 * 210.00158 * 8 6 4 11 11 H 1.48503 * 109.47018 * 329.99693 * 8 6 4 12 12 C 1.46897 * 111.00368 * 236.04342 * 2 1 3 13 13 C 1.53008 * 109.46876 * 293.95437 * 12 2 1 14 14 H 1.09002 * 110.99589 * 55.85335 * 13 12 2 15 15 C 1.54133 * 111.09371 * 179.97438 * 13 12 2 16 16 C 1.50876 * 110.54076 * 146.11422 * 15 13 12 17 17 C 1.39602 * 126.82628 * 160.01373 * 16 15 13 18 18 C 1.37693 * 121.06031 * 179.97438 * 17 16 15 19 19 C 1.38323 * 120.54111 * 359.53209 * 18 17 16 20 20 C 1.38022 * 119.29201 * 0.34275 * 19 18 17 21 21 C 1.38823 * 120.15987 * 359.97133 * 20 19 18 22 22 S 1.77439 * 130.56573 * 179.74643 * 21 20 19 23 23 H 1.09001 * 109.46673 * 183.95432 * 1 2 3 24 24 H 1.08993 * 109.46860 * 303.95556 * 1 2 3 25 25 H 1.08999 * 109.46991 * 63.95731 * 1 2 3 26 26 H 1.09005 * 109.47561 * 186.04868 * 3 2 1 27 27 H 1.09006 * 109.47142 * 306.04473 * 3 2 1 28 28 H 0.97002 * 119.99801 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47271 * 173.95494 * 12 2 1 30 30 H 1.09000 * 109.47085 * 53.94716 * 12 2 1 31 31 H 1.08998 * 109.27508 * 25.82756 * 15 13 12 32 32 H 1.08997 * 109.20709 * 266.36274 * 15 13 12 33 33 H 1.08000 * 119.46476 * 359.77795 * 17 16 15 34 34 H 1.08000 * 119.72793 * 179.76889 * 18 17 16 35 35 H 1.08004 * 120.35318 * 180.32536 * 19 18 17 36 36 H 1.08002 * 119.91973 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3496 1.5284 7 7 1.7143 3.9391 2.6617 8 14 2.9987 4.2767 0.2302 9 1 2.0613 4.9803 -0.6815 10 1 3.8854 5.2684 0.8902 11 1 3.8223 3.3183 -0.5499 12 6 1.9956 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9701 14 1 0.5549 -2.3690 -0.8560 15 6 2.1667 -3.0827 -2.1465 16 6 2.5665 -4.4591 -1.6753 17 6 2.7200 -5.6014 -2.4631 18 6 3.0920 -6.8041 -1.9055 19 6 3.3323 -6.9047 -0.5471 20 6 3.1884 -5.7863 0.2488 21 6 2.8070 -4.5752 -0.3125 22 16 2.5370 -2.9900 0.4375 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 1.9882 4.8555 2.8234 29 1 3.0798 -0.6611 -1.1755 30 1 1.5612 -0.3874 -2.0627 31 1 3.0343 -2.5845 -2.5790 32 1 1.3892 -3.1738 -2.9049 33 1 2.5409 -5.5413 -3.5265 34 1 3.2008 -7.6752 -2.5346 35 1 3.6290 -7.8485 -0.1137 36 1 3.3731 -5.8535 1.3108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092260688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:13 Heat of formation + Delta-G solvation = 32.772900 kcal Electronic energy + Delta-G solvation = -16949.786328 eV Core-core repulsion = 14331.879616 eV Total energy + Delta-G solvation = -2617.906712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39570 -37.27587 -34.56213 -32.47274 -30.92812 -30.34204 -27.84421 -26.50562 -24.41140 -23.17061 -21.78800 -20.83555 -20.15005 -17.62537 -16.88624 -16.05312 -15.59153 -15.15112 -14.80274 -14.59030 -14.25410 -14.02070 -13.49381 -13.13160 -12.81882 -12.76594 -12.37913 -12.08467 -11.88177 -11.79288 -11.38400 -11.12703 -11.06445 -10.88544 -10.67226 -10.25453 -9.89431 -9.81342 -9.56347 -9.29875 -8.89460 -8.58165 -7.49217 -7.18998 -6.05220 -4.02659 1.09202 1.22240 1.75637 2.53013 3.27302 3.35426 3.36872 3.55027 4.20898 4.41406 4.61664 4.71168 4.86393 4.88611 5.04551 5.21646 5.27739 5.29372 5.44348 5.45615 5.55137 5.72140 5.77086 5.88702 6.03058 6.07661 6.18648 6.22261 6.22977 6.35536 6.64754 6.77871 6.80244 6.95012 7.56143 7.82579 7.97398 8.63848 9.03691 9.55992 11.07935 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.004165 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.602726 B = 6721.731417 C = 6881.163394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.528 5.528 3 C 0.163 3.837 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.069 3.931 13 C -0.050 4.050 14 H 0.104 0.896 15 C -0.085 4.085 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.092 4.092 21 C -0.089 4.089 22 S -0.090 6.090 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.013 0.987 26 H 0.029 0.971 27 H -0.015 1.015 28 H 0.264 0.736 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -19.316 -11.408 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.251 5.251 3 C 0.037 3.963 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.061 4.061 13 C -0.179 4.179 14 H 0.123 0.877 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.151 4.151 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.202 4.202 22 S 0.155 5.845 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.002 0.998 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.901 -18.709 -9.677 21.150 hybrid contribution -0.080 0.439 -2.552 2.590 sum 1.821 -18.270 -12.229 22.060 Atomic orbital electron populations 1.22328 0.88188 1.00001 1.01090 1.61944 1.07492 1.16690 1.38988 1.20197 0.95276 0.83618 0.97190 1.21012 1.35604 0.97166 1.00889 0.90053 1.24895 0.95741 0.97357 0.95325 1.69895 1.46867 1.13227 1.23869 0.86867 0.80638 0.80083 0.82172 1.20397 1.21104 1.19195 1.22032 1.01077 0.89418 0.93569 1.24151 1.02379 0.98092 0.93322 0.87740 1.20970 1.02277 0.90841 0.98231 1.20878 1.02139 0.95288 0.93125 1.20781 0.99864 0.91611 0.99335 1.20886 1.01405 0.97385 0.95376 1.21074 0.99720 0.98002 0.93796 1.20442 1.00819 0.90388 1.00015 1.22589 1.02695 0.98474 0.96405 1.86968 1.69378 1.03640 1.24534 0.93311 0.89847 0.96885 0.95258 0.99784 0.92653 0.90009 0.94075 0.88861 0.89487 0.86302 0.85957 0.85469 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.16 60.07 0.55 1.15 16 2 N -0.53 -10.84 4.64 -244.37 -1.13 -11.98 16 3 C 0.16 3.93 3.79 -4.98 -0.02 3.91 16 4 C -0.51 -14.45 9.01 -34.44 -0.31 -14.76 16 5 H 0.08 2.53 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 12 C 0.07 1.13 4.35 -3.82 -0.02 1.11 16 13 C -0.05 -0.71 3.30 -26.14 -0.09 -0.80 16 14 H 0.10 1.45 6.48 -51.93 -0.34 1.11 16 15 C -0.08 -0.98 5.87 -27.21 -0.16 -1.14 16 16 C -0.11 -1.35 5.98 -103.79 -0.62 -1.97 16 17 C -0.10 -1.00 9.97 -39.27 -0.39 -1.39 16 18 C -0.13 -1.23 10.00 -39.75 -0.40 -1.63 16 19 C -0.11 -1.05 10.08 -39.63 -0.40 -1.45 16 20 C -0.09 -1.11 10.05 -39.44 -0.40 -1.51 16 21 C -0.09 -1.23 6.48 -39.13 -0.25 -1.49 16 22 S -0.09 -1.45 22.45 -107.50 -2.41 -3.86 16 23 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 24 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.03 0.72 6.99 -51.93 -0.36 0.36 16 27 H -0.02 -0.37 7.55 -51.93 -0.39 -0.76 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 30 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 31 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.28 305.07 -10.55 -41.84 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.11 Total: -2.45 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.60 Total: -18.08 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.36 Total: -38.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.41 Total: -3.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.28 -10.55 -41.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds