Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46893 * 110.99930 * 2 1 4 4 C 1.50706 * 109.47466 * 66.04363 * 3 2 1 5 5 H 1.07994 * 119.99621 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99862 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99444 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00314 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47231 * 90.00095 * 8 6 4 10 10 H 1.48501 * 109.46877 * 210.00158 * 8 6 4 11 11 H 1.48503 * 109.47018 * 329.99693 * 8 6 4 12 12 C 1.46897 * 111.00368 * 236.04342 * 2 1 3 13 13 C 1.53008 * 109.46876 * 293.95437 * 12 2 1 14 14 H 1.09002 * 110.99589 * 55.85335 * 13 12 2 15 15 C 1.54133 * 111.09371 * 179.97438 * 13 12 2 16 16 C 1.50876 * 110.54076 * 146.11422 * 15 13 12 17 17 C 1.39602 * 126.82628 * 160.01373 * 16 15 13 18 18 C 1.37693 * 121.06031 * 179.97438 * 17 16 15 19 19 C 1.38323 * 120.54111 * 359.53209 * 18 17 16 20 20 C 1.38022 * 119.29201 * 0.34275 * 19 18 17 21 21 C 1.38823 * 120.15987 * 359.97133 * 20 19 18 22 22 S 1.77439 * 130.56573 * 179.74643 * 21 20 19 23 23 H 1.09001 * 109.46673 * 183.95432 * 1 2 3 24 24 H 1.08993 * 109.46860 * 303.95556 * 1 2 3 25 25 H 1.08999 * 109.46991 * 63.95731 * 1 2 3 26 26 H 1.09005 * 109.47561 * 186.04868 * 3 2 1 27 27 H 1.09006 * 109.47142 * 306.04473 * 3 2 1 28 28 H 0.97002 * 119.99801 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47271 * 173.95494 * 12 2 1 30 30 H 1.09000 * 109.47085 * 53.94716 * 12 2 1 31 31 H 1.08998 * 109.27508 * 25.82756 * 15 13 12 32 32 H 1.08997 * 109.20709 * 266.36274 * 15 13 12 33 33 H 1.08000 * 119.46476 * 359.77795 * 17 16 15 34 34 H 1.08000 * 119.72793 * 179.76889 * 18 17 16 35 35 H 1.08004 * 120.35318 * 180.32536 * 19 18 17 36 36 H 1.08002 * 119.91973 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3496 1.5284 7 7 1.7143 3.9391 2.6617 8 14 2.9987 4.2767 0.2302 9 1 2.0613 4.9803 -0.6815 10 1 3.8854 5.2684 0.8902 11 1 3.8223 3.3183 -0.5499 12 6 1.9956 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9701 14 1 0.5549 -2.3690 -0.8560 15 6 2.1667 -3.0827 -2.1465 16 6 2.5665 -4.4591 -1.6753 17 6 2.7200 -5.6014 -2.4631 18 6 3.0920 -6.8041 -1.9055 19 6 3.3323 -6.9047 -0.5471 20 6 3.1884 -5.7863 0.2488 21 6 2.8070 -4.5752 -0.3125 22 16 2.5370 -2.9900 0.4375 23 1 -0.3633 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 1.9882 4.8555 2.8234 29 1 3.0798 -0.6611 -1.1755 30 1 1.5612 -0.3874 -2.0627 31 1 3.0343 -2.5845 -2.5790 32 1 1.3892 -3.1738 -2.9049 33 1 2.5409 -5.5413 -3.5265 34 1 3.2008 -7.6752 -2.5346 35 1 3.6290 -7.8485 -0.1137 36 1 3.3731 -5.8535 1.3108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092260688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = 13.662135 kcal Electronic energy + Delta-G solvation = -16950.615033 eV Core-core repulsion = 14331.879616 eV Total energy + Delta-G solvation = -2618.735417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24942 -38.75443 -35.73703 -34.51365 -31.74634 -31.58580 -29.63845 -27.80379 -25.85534 -24.17433 -23.05645 -21.90089 -21.67784 -19.02436 -18.54358 -17.18096 -16.67870 -16.48742 -16.20398 -15.90717 -15.59352 -15.36896 -14.57219 -14.50436 -14.23660 -13.96822 -13.72851 -13.44341 -13.18030 -13.00892 -12.75136 -12.64826 -12.43435 -12.26554 -11.95194 -11.79343 -11.77432 -11.45754 -10.91586 -10.79152 -10.54220 -9.71146 -9.06246 -8.36171 -8.28268 -6.31917 0.24330 0.39408 0.68819 1.33849 1.36859 1.47378 1.47495 2.34396 2.73037 3.01518 3.06904 3.58662 3.66595 3.86972 4.02819 4.14889 4.24197 4.39379 4.45188 4.51413 4.58395 4.62463 4.64776 4.67520 4.85518 4.89568 4.93190 4.99795 5.10196 5.20731 5.38576 5.44783 5.52658 5.56530 5.94718 6.01042 6.31883 6.61699 6.74369 7.31410 8.88676 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.004165 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.602726 B = 6721.731417 C = 6881.163394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.549 5.549 3 C 0.174 3.826 4 C -0.516 4.516 5 H 0.034 0.966 6 C 0.006 3.994 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.248 1.248 12 C 0.072 3.928 13 C -0.031 4.031 14 H 0.107 0.893 15 C -0.078 4.078 16 C -0.119 4.119 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.110 4.110 21 C -0.106 4.106 22 S -0.180 6.180 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.028 0.972 27 H -0.007 1.007 28 H 0.267 0.733 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -21.219 -15.171 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.273 5.273 3 C 0.047 3.953 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.172 1.172 12 C -0.057 4.057 13 C -0.160 4.160 14 H 0.125 0.875 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.134 4.134 21 C -0.219 4.219 22 S 0.063 5.937 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.564 -20.659 -13.462 24.791 hybrid contribution -0.326 0.843 -1.319 1.599 sum 2.239 -19.816 -14.781 24.823 Atomic orbital electron populations 1.22233 0.87371 1.01090 1.00214 1.61779 1.08418 1.15022 1.42060 1.19923 0.95177 0.85451 0.94735 1.21258 1.34827 0.97467 1.01918 0.94734 1.25884 0.96975 0.98452 0.97821 1.70062 1.48670 1.13864 1.26452 0.85679 0.79215 0.78666 0.79149 1.18983 1.20827 1.17175 1.22058 1.00770 0.90093 0.92801 1.24060 1.02034 0.96825 0.93095 0.87498 1.20945 1.03314 0.90059 0.97313 1.21095 1.02386 0.96336 0.92642 1.21150 0.99025 0.91009 1.00616 1.21364 0.99258 0.98234 0.95470 1.21446 0.98640 0.98198 0.94103 1.20685 1.01316 0.90789 1.00599 1.22521 1.05223 0.97197 0.96928 1.87161 1.70932 1.07507 1.28059 0.90819 0.93508 0.95250 0.95400 0.98902 0.92447 0.90492 0.91572 0.88197 0.86653 0.83496 0.82563 0.82621 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.16 127.69 1.17 2.64 16 2 N -0.55 -22.60 4.64 -927.04 -4.30 -26.90 16 3 C 0.17 8.36 3.79 85.56 0.32 8.69 16 4 C -0.52 -30.44 9.01 25.60 0.23 -30.21 16 5 H 0.03 2.29 7.37 -2.91 -0.02 2.27 16 6 C 0.01 0.34 5.47 84.65 0.46 0.80 16 7 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 8 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 12 C 0.07 2.24 4.35 86.31 0.38 2.61 16 13 C -0.03 -0.85 3.30 30.98 0.10 -0.75 16 14 H 0.11 2.80 6.48 -2.39 -0.02 2.79 16 15 C -0.08 -1.60 5.87 30.29 0.18 -1.42 16 16 C -0.12 -2.69 5.98 -19.33 -0.12 -2.80 16 17 C -0.10 -1.67 9.97 22.47 0.22 -1.45 16 18 C -0.12 -1.82 10.00 22.16 0.22 -1.60 16 19 C -0.10 -1.76 10.08 22.24 0.22 -1.53 16 20 C -0.11 -2.57 10.05 22.36 0.22 -2.34 16 21 C -0.11 -2.89 6.48 22.56 0.15 -2.75 16 22 S -0.18 -5.97 22.45 -56.49 -1.27 -7.24 16 23 H 0.07 2.36 6.42 -2.39 -0.02 2.34 16 24 H 0.05 2.08 6.76 -2.39 -0.02 2.06 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.03 1.35 6.99 -2.38 -0.02 1.33 16 27 H -0.01 -0.31 7.55 -2.38 -0.02 -0.32 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.08 2.47 7.93 -2.39 -0.02 2.45 16 30 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 31 H 0.10 1.92 7.85 -2.39 -0.02 1.90 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -71.50 305.07 1.39 -70.12 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.00 Total: 8.09 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.77 Total: -30.11 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -4.00 Total: -87.03 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -1.27 Total: -7.24 kcal Total: -71.50 1.39 -70.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.779 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds