Wall clock time and date at job start Mon Mar 30 2020 06:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46734 * 2 1 4 4 C 1.36933 * 120.00219 * 269.63535 * 3 2 1 5 5 H 1.07996 * 120.00432 * 321.78126 * 4 3 2 6 6 C 1.38813 * 120.00033 * 141.77554 * 4 3 2 7 7 N 1.31622 * 120.00380 * 157.46138 * 6 4 3 8 8 Si 1.86811 * 119.99950 * 337.46572 * 6 4 3 9 9 H 1.48498 * 109.46829 * 95.68453 * 8 6 4 10 10 H 1.48495 * 109.46750 * 215.68176 * 8 6 4 11 11 H 1.48498 * 109.46644 * 335.68142 * 8 6 4 12 12 C 1.46506 * 119.99796 * 89.64065 * 3 2 1 13 13 C 1.53003 * 109.46887 * 89.99938 * 12 3 2 14 14 H 1.08999 * 110.99678 * 304.14709 * 13 12 3 15 15 C 1.54143 * 111.09443 * 180.02562 * 13 12 3 16 16 C 1.50878 * 110.51317 * 213.79166 * 15 13 12 17 17 C 1.39600 * 126.82643 * 200.21712 * 16 15 13 18 18 C 1.37696 * 121.05595 * 180.35454 * 17 16 15 19 19 C 1.38321 * 120.54654 * 0.11553 * 18 17 16 20 20 C 1.38029 * 119.28833 * 0.13356 * 19 18 17 21 21 C 1.38827 * 120.16138 * 359.43179 * 20 19 18 22 22 S 1.77428 * 130.57056 * 180.57709 * 21 20 19 23 23 H 1.08997 * 109.47158 * 60.00218 * 1 2 3 24 24 H 1.09005 * 109.46407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47099 * 299.99104 * 1 2 3 26 26 H 1.09005 * 109.47149 * 240.00411 * 2 1 3 27 27 H 1.08997 * 109.47158 * 119.99781 * 2 1 3 28 28 H 0.96999 * 120.00338 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.46860 * 329.99946 * 12 3 2 30 30 H 1.09001 * 109.46813 * 209.99570 * 12 3 2 31 31 H 1.08997 * 109.27900 * 93.50760 * 15 13 12 32 32 H 1.09001 * 109.27709 * 334.06804 * 15 13 12 33 33 H 1.08000 * 119.47063 * 0.36785 * 17 16 15 34 34 H 1.08001 * 119.72808 * 180.13728 * 18 17 16 35 35 H 1.07999 * 120.35530 * 179.86117 * 19 18 17 36 36 H 1.08004 * 119.91952 * 179.71225 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2536 2.0243 -1.1858 5 1 2.6820 1.4844 -2.0172 6 6 1.9413 3.3703 -1.3194 7 7 2.5397 4.0966 -2.2396 8 14 0.6718 4.1508 -0.1930 9 1 1.3590 4.8028 0.9506 10 1 -0.1030 5.1669 -0.9495 11 1 -0.2497 3.1031 0.3153 12 6 2.2549 2.0745 1.2688 13 6 3.6973 1.8351 1.7195 14 1 3.9124 0.7689 1.7904 15 6 3.9872 2.5491 3.0544 16 6 5.4172 3.0283 3.0981 17 6 6.1568 3.3518 4.2370 18 6 7.4596 3.7867 4.1381 19 6 8.0658 3.9152 2.9015 20 6 7.3498 3.6052 1.7629 21 6 6.0393 3.1581 1.8632 22 16 4.8851 2.6758 0.6050 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.3217 5.0372 -2.3327 29 1 1.5696 1.6919 2.0251 30 1 2.0887 3.1435 1.1352 31 1 3.8145 1.8563 3.8780 32 1 3.3182 3.4034 3.1583 33 1 5.7000 3.2594 5.2112 34 1 8.0127 4.0291 5.0335 35 1 9.0871 4.2587 2.8274 36 1 7.8116 3.7063 0.7919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092260731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:29 Heat of formation + Delta-G solvation = 48.602871 kcal Electronic energy + Delta-G solvation = -17719.505057 eV Core-core repulsion = 15102.284784 eV Total energy + Delta-G solvation = -2617.220273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99195 -36.72744 -34.18091 -31.90214 -30.61190 -30.54985 -28.65159 -25.67800 -23.78656 -23.03080 -21.95452 -20.64821 -20.00214 -17.33572 -16.78898 -15.72590 -15.21226 -14.90124 -14.69500 -14.29048 -13.96750 -13.34356 -13.18039 -13.05002 -12.73683 -12.38333 -12.16328 -11.92540 -11.57553 -11.47266 -11.37171 -11.03921 -10.85797 -10.66585 -10.45000 -10.01883 -10.01174 -9.57526 -9.36922 -8.98181 -8.54667 -8.47623 -6.94140 -6.59251 -5.98356 -3.40141 1.47164 1.58505 2.32895 3.11898 3.30251 3.45917 3.49230 3.90955 4.51433 4.62593 4.97846 5.06624 5.18611 5.26805 5.35424 5.42301 5.55934 5.72023 5.80208 5.88279 5.91108 5.99321 6.08487 6.13228 6.24122 6.25959 6.31652 6.46995 6.56780 6.59650 6.63361 6.69592 6.78627 7.02936 7.14451 8.03722 8.39579 8.95788 9.70371 10.09172 11.16284 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.007007 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.958128 B = 3994.857030 C = 4354.207145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 N -0.602 5.602 4 C -0.267 4.267 5 H 0.080 0.920 6 C 0.053 3.947 7 N -0.884 5.884 8 Si 0.861 3.139 9 H -0.284 1.284 10 H -0.300 1.300 11 H -0.267 1.267 12 C 0.153 3.847 13 C -0.079 4.079 14 H 0.094 0.906 15 C -0.084 4.084 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.140 4.140 19 C -0.108 4.108 20 C -0.098 4.098 21 C -0.101 4.101 22 S -0.043 6.043 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -3.184 12.086 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 N -0.324 5.324 4 C -0.397 4.397 5 H 0.097 0.903 6 C -0.149 4.149 7 N -0.523 5.523 8 Si 0.691 3.309 9 H -0.212 1.212 10 H -0.228 1.228 11 H -0.191 1.191 12 C 0.025 3.975 13 C -0.211 4.211 14 H 0.112 0.888 15 C -0.123 4.123 16 C -0.121 4.121 17 C -0.117 4.117 18 C -0.161 4.161 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.214 4.214 22 S 0.205 5.795 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.048 -2.935 10.579 12.084 hybrid contribution -0.664 0.530 2.012 2.184 sum 4.384 -2.405 12.591 13.548 Atomic orbital electron populations 1.22329 0.99622 0.99189 1.01639 1.20902 0.91757 0.86461 0.99069 1.44182 1.75131 1.11399 1.01660 1.18674 1.36676 0.93422 0.90916 0.90262 1.25393 0.96996 0.96702 0.95842 1.69856 1.40222 1.06919 1.35314 0.87160 0.84036 0.79095 0.80638 1.21151 1.22825 1.19129 1.21221 0.89410 0.98220 0.88620 1.24966 1.01186 1.01287 0.93659 0.88788 1.20973 0.92686 1.00684 0.97908 1.20917 0.95337 1.02365 0.93454 1.20736 0.94251 0.99691 0.97032 1.20774 0.95136 1.02667 0.97517 1.21019 0.99426 0.99945 0.92363 1.20403 0.92036 1.00993 0.98822 1.23208 0.97896 1.01380 0.98902 1.87863 1.16721 1.67127 1.07802 0.92473 0.94291 0.94132 0.92851 0.94539 0.92692 0.92761 0.91624 0.90120 0.89519 0.86762 0.86412 0.85908 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 10.24 37.16 0.38 -2.61 16 2 C 0.14 2.73 6.39 -4.04 -0.03 2.71 16 3 N -0.60 -13.56 2.04 -173.23 -0.35 -13.92 16 4 C -0.27 -7.11 8.75 -15.06 -0.13 -7.24 16 5 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.05 1.49 5.30 -17.43 -0.09 1.39 16 7 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 8 Si 0.86 21.59 25.08 -169.99 -4.26 17.32 16 9 H -0.28 -6.99 6.68 56.52 0.38 -6.61 16 10 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.16 3.99 -4.04 -0.02 3.14 16 13 C -0.08 -1.48 3.67 -26.13 -0.10 -1.58 16 14 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 15 C -0.08 -1.35 5.87 -27.20 -0.16 -1.51 16 16 C -0.11 -1.92 5.98 -103.79 -0.62 -2.54 16 17 C -0.10 -1.37 9.97 -39.27 -0.39 -1.76 16 18 C -0.14 -1.80 10.00 -39.75 -0.40 -2.20 16 19 C -0.11 -1.45 10.08 -39.63 -0.40 -1.85 16 20 C -0.10 -1.59 10.05 -39.44 -0.40 -1.98 16 21 C -0.10 -1.87 6.48 -39.12 -0.25 -2.13 16 22 S -0.04 -0.93 21.38 -107.50 -2.30 -3.23 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 27 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.07 1.52 3.38 -51.93 -0.18 1.34 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.41 7.86 -51.93 -0.41 1.01 16 33 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -29.70 304.84 -9.37 -39.07 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.23 Total: -0.25 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.60 Total: -18.16 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.42 Total: -39.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.26 Total: 17.32 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.70 -9.37 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.674 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds