Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46734 * 2 1 4 4 C 1.36933 * 120.00219 * 269.63535 * 3 2 1 5 5 H 1.07996 * 120.00432 * 321.78126 * 4 3 2 6 6 C 1.38813 * 120.00033 * 141.77554 * 4 3 2 7 7 N 1.31622 * 120.00380 * 157.46138 * 6 4 3 8 8 Si 1.86811 * 119.99950 * 337.46572 * 6 4 3 9 9 H 1.48498 * 109.46829 * 95.68453 * 8 6 4 10 10 H 1.48495 * 109.46750 * 215.68176 * 8 6 4 11 11 H 1.48498 * 109.46644 * 335.68142 * 8 6 4 12 12 C 1.46506 * 119.99796 * 89.64065 * 3 2 1 13 13 C 1.53003 * 109.46887 * 89.99938 * 12 3 2 14 14 H 1.08999 * 110.99678 * 304.14709 * 13 12 3 15 15 C 1.54143 * 111.09443 * 180.02562 * 13 12 3 16 16 C 1.50878 * 110.51317 * 213.79166 * 15 13 12 17 17 C 1.39600 * 126.82643 * 200.21712 * 16 15 13 18 18 C 1.37696 * 121.05595 * 180.35454 * 17 16 15 19 19 C 1.38321 * 120.54654 * 0.11553 * 18 17 16 20 20 C 1.38029 * 119.28833 * 0.13356 * 19 18 17 21 21 C 1.38827 * 120.16138 * 359.43179 * 20 19 18 22 22 S 1.77428 * 130.57056 * 180.57709 * 21 20 19 23 23 H 1.08997 * 109.47158 * 60.00218 * 1 2 3 24 24 H 1.09005 * 109.46407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47099 * 299.99104 * 1 2 3 26 26 H 1.09005 * 109.47149 * 240.00411 * 2 1 3 27 27 H 1.08997 * 109.47158 * 119.99781 * 2 1 3 28 28 H 0.96999 * 120.00338 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.46860 * 329.99946 * 12 3 2 30 30 H 1.09001 * 109.46813 * 209.99570 * 12 3 2 31 31 H 1.08997 * 109.27900 * 93.50760 * 15 13 12 32 32 H 1.09001 * 109.27709 * 334.06804 * 15 13 12 33 33 H 1.08000 * 119.47063 * 0.36785 * 17 16 15 34 34 H 1.08001 * 119.72808 * 180.13728 * 18 17 16 35 35 H 1.07999 * 120.35530 * 179.86117 * 19 18 17 36 36 H 1.08004 * 119.91952 * 179.71225 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2536 2.0243 -1.1858 5 1 2.6820 1.4844 -2.0172 6 6 1.9413 3.3703 -1.3194 7 7 2.5397 4.0966 -2.2396 8 14 0.6718 4.1508 -0.1930 9 1 1.3590 4.8028 0.9506 10 1 -0.1030 5.1669 -0.9495 11 1 -0.2497 3.1031 0.3153 12 6 2.2549 2.0745 1.2688 13 6 3.6973 1.8351 1.7195 14 1 3.9124 0.7689 1.7904 15 6 3.9872 2.5491 3.0544 16 6 5.4172 3.0283 3.0981 17 6 6.1568 3.3518 4.2370 18 6 7.4596 3.7867 4.1381 19 6 8.0658 3.9152 2.9015 20 6 7.3498 3.6052 1.7629 21 6 6.0393 3.1581 1.8632 22 16 4.8851 2.6758 0.6050 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.3217 5.0372 -2.3327 29 1 1.5696 1.6919 2.0251 30 1 2.0887 3.1435 1.1352 31 1 3.8145 1.8563 3.8780 32 1 3.3182 3.4034 3.1583 33 1 5.7000 3.2594 5.2112 34 1 8.0127 4.0291 5.0335 35 1 9.0871 4.2587 2.8274 36 1 7.8116 3.7063 0.7919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092260731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = 32.482918 kcal Electronic energy + Delta-G solvation = -17720.204071 eV Core-core repulsion = 15102.284784 eV Total energy + Delta-G solvation = -2617.919287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.17189 -38.39523 -35.54229 -33.89789 -32.03721 -31.69718 -30.21451 -27.23159 -25.53458 -24.32936 -23.26163 -21.89399 -21.67977 -18.95049 -18.40276 -17.37469 -16.51264 -16.44212 -16.14478 -15.72762 -15.33270 -15.03654 -14.76778 -14.46066 -14.15673 -13.77633 -13.69207 -13.44287 -13.07817 -12.89146 -12.84394 -12.62774 -12.41261 -12.14449 -11.96294 -11.74322 -11.54496 -11.53706 -10.70516 -10.54753 -10.37777 -9.68871 -8.78815 -8.19162 -8.11689 -5.49324 0.30325 0.42690 0.88601 1.29526 1.40049 1.49449 1.69601 2.45851 2.76491 3.04017 3.37028 3.65704 3.82841 4.00170 4.07157 4.22299 4.35064 4.41302 4.49112 4.54112 4.62141 4.65200 4.69102 4.84256 4.84928 4.91482 5.01072 5.07294 5.14174 5.27801 5.45331 5.47229 5.55920 5.57551 6.00122 6.05532 6.25401 7.03722 7.68774 8.09415 9.07481 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.007007 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.958128 B = 3994.857030 C = 4354.207145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 N -0.613 5.613 4 C -0.243 4.243 5 H 0.033 0.967 6 C 0.004 3.996 7 N -0.935 5.935 8 Si 0.919 3.081 9 H -0.278 1.278 10 H -0.314 1.314 11 H -0.249 1.249 12 C 0.150 3.850 13 C -0.055 4.055 14 H 0.103 0.897 15 C -0.079 4.079 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.127 4.127 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.118 4.118 22 S -0.163 6.163 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.258 0.742 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 -3.941 16.748 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 N -0.336 5.336 4 C -0.373 4.373 5 H 0.051 0.949 6 C -0.194 4.194 7 N -0.578 5.578 8 Si 0.749 3.251 9 H -0.206 1.206 10 H -0.243 1.243 11 H -0.172 1.172 12 C 0.023 3.977 13 C -0.187 4.187 14 H 0.121 0.879 15 C -0.117 4.117 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.142 4.142 21 C -0.231 4.231 22 S 0.082 5.918 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.274 -3.728 15.292 16.600 hybrid contribution -0.511 0.684 0.655 1.076 sum 4.763 -3.045 15.947 16.919 Atomic orbital electron populations 1.22211 0.98118 1.01094 1.00457 1.21056 0.92887 0.84481 1.00128 1.44269 1.75743 1.12525 1.01017 1.18337 1.34558 0.93088 0.91360 0.94912 1.25840 0.98771 0.97295 0.97515 1.70000 1.42504 1.06931 1.38393 0.86214 0.81748 0.78274 0.78897 1.20591 1.24349 1.17221 1.21268 0.91334 0.96706 0.88429 1.24812 0.98563 1.01512 0.93766 0.87859 1.20959 0.92458 1.01142 0.97167 1.21157 0.95740 1.02802 0.93541 1.21153 0.94579 0.98462 0.97420 1.21327 0.94813 0.99995 0.98618 1.21425 1.00673 0.98546 0.91551 1.20644 0.91780 1.01650 1.00100 1.22974 0.98287 1.04241 0.97603 1.88097 1.21057 1.69438 1.13165 0.95255 0.90871 0.93587 0.94107 0.91203 0.93333 0.89059 0.94173 0.86266 0.89803 0.83368 0.82280 0.82571 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 10.24 71.98 0.74 -4.54 16 2 C 0.14 5.07 6.39 86.38 0.55 5.62 16 3 N -0.61 -27.52 2.04 -701.98 -1.43 -28.94 16 4 C -0.24 -13.51 8.75 84.03 0.73 -12.77 16 5 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 6 C 0.00 0.22 5.30 84.86 0.45 0.67 16 7 N -0.94 -58.95 13.97 21.65 0.30 -58.64 16 8 Si 0.92 45.79 25.08 68.60 1.72 47.51 16 9 H -0.28 -13.45 6.68 99.48 0.66 -12.79 16 10 H -0.31 -16.18 7.11 99.48 0.71 -15.48 16 11 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 12 C 0.15 5.93 3.99 86.38 0.34 6.27 16 13 C -0.06 -2.01 3.67 30.98 0.11 -1.89 16 14 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 15 C -0.08 -2.31 5.87 30.29 0.18 -2.13 16 16 C -0.13 -3.93 5.98 -19.32 -0.12 -4.04 16 17 C -0.10 -2.28 9.97 22.47 0.22 -2.05 16 18 C -0.13 -2.63 10.00 22.16 0.22 -2.41 16 19 C -0.10 -2.41 10.08 22.24 0.22 -2.19 16 20 C -0.12 -3.76 10.05 22.36 0.22 -3.53 16 21 C -0.12 -4.38 6.48 22.57 0.15 -4.23 16 22 S -0.16 -7.35 21.38 -56.49 -1.21 -8.56 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.57 8.04 -2.38 -0.02 1.55 16 27 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 30 H 0.04 1.83 3.38 -2.39 -0.01 1.82 16 31 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.08 2.52 7.86 -2.39 -0.02 2.50 16 33 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -70.32 304.84 4.43 -65.89 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.01 Total: 9.98 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.03 Total: -27.23 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -1.13 Total: -87.59 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.72 Total: 47.51 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.21 Total: -8.56 kcal Total: -70.32 4.43 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.374 kcal (2) G-P(sol) polarization free energy of solvation -70.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds