Wall clock time and date at job start Mon Mar 30 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00362 * 2 1 4 4 C 1.50700 * 109.47036 * 293.95677 * 3 2 1 5 5 H 1.08000 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99870 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00217 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99759 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46995 * 89.99976 * 8 6 4 10 10 H 1.48503 * 109.47263 * 209.99490 * 8 6 4 11 11 H 1.48501 * 109.47259 * 330.00120 * 8 6 4 12 12 C 1.46897 * 111.00247 * 123.95819 * 2 1 3 13 13 C 1.53002 * 109.47401 * 66.03996 * 12 2 1 14 14 H 1.09000 * 109.20199 * 306.97274 * 13 12 2 15 15 C 1.54146 * 109.27684 * 66.45768 * 13 12 2 16 16 S 1.83300 * 101.07876 * 91.97553 * 15 13 12 17 17 C 1.77429 * 96.61025 * 24.84450 * 16 15 13 18 18 C 1.38825 * 130.57029 * 164.77138 * 17 16 15 19 19 C 1.38027 * 120.16036 * 180.23568 * 18 17 16 20 20 C 1.38318 * 119.29536 * 0.02942 * 19 18 17 21 21 C 1.37704 * 120.54270 * 359.86910 * 20 19 18 22 22 C 1.38891 * 108.28472 * 344.79572 * 17 16 15 23 23 H 1.09007 * 109.46861 * 296.04616 * 1 2 3 24 24 H 1.09001 * 109.47197 * 56.04458 * 1 2 3 25 25 H 1.09004 * 109.47408 * 176.04862 * 1 2 3 26 26 H 1.08997 * 109.46962 * 53.95620 * 3 2 1 27 27 H 1.09001 * 109.47580 * 173.96071 * 3 2 1 28 28 H 0.97001 * 119.99851 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47009 * 306.04482 * 12 2 1 30 30 H 1.08995 * 109.47660 * 186.04366 * 12 2 1 31 31 H 1.09004 * 111.09769 * 334.02342 * 15 13 12 32 32 H 1.08996 * 111.09716 * 209.92704 * 15 13 12 33 33 H 1.08003 * 119.91626 * 0.22223 * 18 17 16 34 34 H 1.08003 * 120.35000 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.73114 * 179.89752 * 20 19 18 36 36 H 1.08002 * 119.47212 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0487 6 6 2.0277 3.3490 -1.5289 7 7 2.7130 4.0014 -0.6154 8 14 1.5839 4.1864 -3.1387 9 1 0.2718 4.8674 -2.9971 10 1 2.6266 5.1872 -3.4801 11 1 1.5003 3.1704 -4.2185 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5571 -2.3310 0.8087 15 6 2.3785 -2.8160 -0.2501 16 16 3.9008 -3.4620 0.5404 17 6 3.2092 -3.6921 2.1580 18 6 3.6799 -4.4129 3.2471 19 6 2.9537 -4.4502 4.4203 20 6 1.7554 -3.7635 4.4967 21 6 1.2896 -3.0468 3.4171 22 6 2.0101 -2.9940 2.2226 23 1 -0.3633 0.4513 0.9234 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5612 1.9272 0.8309 27 1 3.0798 1.3443 0.1081 28 1 2.9882 4.9173 -0.7777 29 1 1.5611 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1755 31 1 2.6127 -2.0322 -0.9705 32 1 1.8082 -3.6186 -0.7177 33 1 4.6165 -4.9460 3.1761 34 1 3.3172 -5.0097 5.2696 35 1 1.1807 -3.7892 5.4107 36 1 0.3515 -2.5173 3.4956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092275868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:17 Heat of formation + Delta-G solvation = 29.486463 kcal Electronic energy + Delta-G solvation = -17278.692340 eV Core-core repulsion = 14660.643117 eV Total energy + Delta-G solvation = -2618.049223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56568 -37.14851 -34.29155 -32.36713 -30.89874 -29.49726 -27.38365 -26.67169 -24.58239 -22.81592 -22.70207 -20.75533 -19.70268 -17.70152 -16.42259 -15.76524 -15.52282 -14.98666 -14.74301 -14.64503 -14.16732 -13.86637 -13.37985 -13.10103 -12.89220 -12.60550 -12.12246 -11.95785 -11.66470 -11.45715 -11.22200 -11.17381 -10.90857 -10.69795 -10.63282 -10.44288 -9.98915 -9.89007 -9.62510 -9.25726 -8.79210 -8.45603 -7.32780 -7.29295 -6.04036 -4.05797 1.14554 1.27681 1.74114 2.42154 3.30632 3.37199 3.41093 3.60440 4.38894 4.49263 4.67935 4.87895 4.95916 5.00797 5.20569 5.29824 5.33469 5.42822 5.53373 5.70125 5.77842 5.90583 5.99400 6.03940 6.12568 6.24081 6.30163 6.32759 6.41177 6.44660 6.69464 6.82758 7.25786 7.31085 7.76355 8.04520 8.14714 8.49973 9.01516 9.58524 11.06868 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004495 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.772045 B = 6227.660913 C = 6486.037764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.539 5.539 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.066 3.934 13 C -0.054 4.054 14 H 0.095 0.905 15 C -0.065 4.065 16 S -0.159 6.159 17 C -0.074 4.074 18 C -0.093 4.093 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.092 4.092 23 H 0.011 0.989 24 H 0.076 0.924 25 H 0.045 0.955 26 H -0.009 1.009 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 -16.374 7.791 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.263 5.263 3 C 0.069 3.931 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.063 4.063 13 C -0.074 4.074 14 H 0.113 0.887 15 C -0.212 4.212 16 S 0.084 5.916 17 C -0.186 4.186 18 C -0.117 4.117 19 C -0.128 4.128 20 C -0.145 4.145 21 C -0.112 4.112 22 C -0.098 4.098 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.009 0.991 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.536 -16.582 6.747 17.910 hybrid contribution -1.643 1.216 0.569 2.122 sum -2.179 -15.366 7.316 17.157 Atomic orbital electron populations 1.22282 0.89101 0.99400 1.00746 1.62088 1.06839 1.17996 1.39376 1.19730 0.95478 0.81242 0.96686 1.21141 1.34926 0.96940 1.01660 0.91825 1.24989 0.95253 0.97367 0.96970 1.69960 1.38220 1.11456 1.34105 0.86508 0.77975 0.79257 0.83728 1.20776 1.21243 1.19751 1.22029 1.00970 0.90224 0.93062 1.20621 1.01687 0.95943 0.89135 0.88729 1.24434 0.93467 1.03532 0.99803 1.86067 1.20526 1.81184 1.03862 1.22157 0.97522 1.00958 0.98000 1.20398 1.00308 0.99172 0.91798 1.21045 0.95042 0.99596 0.97091 1.20924 0.96832 0.98341 0.98393 1.20842 0.99666 0.98912 0.91821 1.20939 0.95127 0.97603 0.96179 0.97035 0.90531 0.93652 0.99122 0.95114 0.92900 0.95393 0.90481 0.84618 0.89083 0.85769 0.85427 0.85821 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.15 60.06 0.55 1.17 16 2 N -0.54 -11.16 4.12 -244.38 -1.01 -12.16 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.06 8.46 -34.44 -0.29 -14.35 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.07 1.19 4.22 -3.82 -0.02 1.17 16 13 C -0.05 -0.80 2.54 -91.09 -0.23 -1.03 16 14 H 0.09 1.31 6.24 -51.93 -0.32 0.99 16 15 C -0.06 -0.93 6.99 37.76 0.26 -0.66 16 16 S -0.16 -2.37 23.01 -107.50 -2.47 -4.84 16 17 C -0.07 -1.05 6.48 -39.12 -0.25 -1.31 16 18 C -0.09 -1.13 10.05 -39.44 -0.40 -1.52 16 19 C -0.11 -1.12 10.08 -39.63 -0.40 -1.52 16 20 C -0.12 -1.33 10.00 -39.75 -0.40 -1.72 16 21 C -0.09 -1.14 9.97 -39.27 -0.39 -1.54 16 22 C -0.09 -1.31 5.22 -103.79 -0.54 -1.85 16 23 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 24 H 0.08 1.53 6.76 -51.93 -0.35 1.18 16 25 H 0.04 0.70 6.33 -51.93 -0.33 0.37 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.03 0.86 7.93 -51.93 -0.41 0.44 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.08 1.50 7.88 -51.93 -0.41 1.09 16 31 H 0.14 2.18 7.41 -51.93 -0.38 1.80 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -29.77 307.34 -10.46 -40.23 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.10 Total: -1.65 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.23 Total: -16.73 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.27 Total: -38.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.47 Total: -4.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.77 -10.46 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092275868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.713 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds