Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00362 * 2 1 4 4 C 1.50700 * 109.47036 * 293.95677 * 3 2 1 5 5 H 1.08000 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99870 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00217 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99759 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46995 * 89.99976 * 8 6 4 10 10 H 1.48503 * 109.47263 * 209.99490 * 8 6 4 11 11 H 1.48501 * 109.47259 * 330.00120 * 8 6 4 12 12 C 1.46897 * 111.00247 * 123.95819 * 2 1 3 13 13 C 1.53002 * 109.47401 * 66.03996 * 12 2 1 14 14 H 1.09000 * 109.20199 * 306.97274 * 13 12 2 15 15 C 1.54146 * 109.27684 * 66.45768 * 13 12 2 16 16 S 1.83300 * 101.07876 * 91.97553 * 15 13 12 17 17 C 1.77429 * 96.61025 * 24.84450 * 16 15 13 18 18 C 1.38825 * 130.57029 * 164.77138 * 17 16 15 19 19 C 1.38027 * 120.16036 * 180.23568 * 18 17 16 20 20 C 1.38318 * 119.29536 * 0.02942 * 19 18 17 21 21 C 1.37704 * 120.54270 * 359.86910 * 20 19 18 22 22 C 1.38891 * 108.28472 * 344.79572 * 17 16 15 23 23 H 1.09007 * 109.46861 * 296.04616 * 1 2 3 24 24 H 1.09001 * 109.47197 * 56.04458 * 1 2 3 25 25 H 1.09004 * 109.47408 * 176.04862 * 1 2 3 26 26 H 1.08997 * 109.46962 * 53.95620 * 3 2 1 27 27 H 1.09001 * 109.47580 * 173.96071 * 3 2 1 28 28 H 0.97001 * 119.99851 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47009 * 306.04482 * 12 2 1 30 30 H 1.08995 * 109.47660 * 186.04366 * 12 2 1 31 31 H 1.09004 * 111.09769 * 334.02342 * 15 13 12 32 32 H 1.08996 * 111.09716 * 209.92704 * 15 13 12 33 33 H 1.08003 * 119.91626 * 0.22223 * 18 17 16 34 34 H 1.08003 * 120.35000 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.73114 * 179.89752 * 20 19 18 36 36 H 1.08002 * 119.47212 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0487 6 6 2.0277 3.3490 -1.5289 7 7 2.7130 4.0014 -0.6154 8 14 1.5839 4.1864 -3.1387 9 1 0.2718 4.8674 -2.9971 10 1 2.6266 5.1872 -3.4801 11 1 1.5003 3.1704 -4.2185 12 6 1.9954 -0.7660 1.1375 13 6 1.6314 -2.2427 0.9703 14 1 0.5571 -2.3310 0.8087 15 6 2.3785 -2.8160 -0.2501 16 16 3.9008 -3.4620 0.5404 17 6 3.2092 -3.6921 2.1580 18 6 3.6799 -4.4129 3.2471 19 6 2.9537 -4.4502 4.4203 20 6 1.7554 -3.7635 4.4967 21 6 1.2896 -3.0468 3.4171 22 6 2.0101 -2.9940 2.2226 23 1 -0.3633 0.4513 0.9234 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5612 1.9272 0.8309 27 1 3.0798 1.3443 0.1081 28 1 2.9882 4.9173 -0.7777 29 1 1.5611 -0.3873 2.0628 30 1 3.0797 -0.6612 1.1755 31 1 2.6127 -2.0322 -0.9705 32 1 1.8082 -3.6186 -0.7177 33 1 4.6165 -4.9460 3.1761 34 1 3.3172 -5.0097 5.2696 35 1 1.1807 -3.7892 5.4107 36 1 0.3515 -2.5173 3.4956 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092275868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = 13.039743 kcal Electronic energy + Delta-G solvation = -17279.405523 eV Core-core repulsion = 14660.643117 eV Total energy + Delta-G solvation = -2618.762406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59670 -38.61692 -35.74144 -34.33911 -31.81445 -30.61246 -29.27273 -28.15476 -26.20480 -24.14439 -23.72658 -22.28156 -21.04074 -18.72003 -18.52403 -17.03412 -16.71574 -16.43779 -16.16169 -15.93028 -15.50970 -15.38025 -14.69779 -14.37057 -14.12129 -13.83490 -13.82220 -13.26864 -13.13919 -12.80116 -12.75864 -12.66420 -12.55371 -12.34964 -12.20033 -11.86557 -11.73634 -11.28615 -11.08161 -10.62892 -10.62481 -9.76694 -9.08066 -8.41207 -8.20662 -6.31147 0.19380 0.35719 0.65531 1.32245 1.41522 1.43166 1.54698 2.40018 2.67654 3.12094 3.24242 3.44134 3.70850 3.93423 3.97028 4.18232 4.30293 4.42481 4.46551 4.49504 4.56319 4.66171 4.74175 4.78027 4.88946 4.92644 5.04323 5.09065 5.17500 5.30308 5.34405 5.43244 5.53686 5.64077 5.96330 6.02639 6.28577 6.56649 6.85157 7.38839 8.90727 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004495 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.772045 B = 6227.660913 C = 6486.037764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.540 5.540 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.263 1.263 12 C 0.074 3.926 13 C -0.042 4.042 14 H 0.109 0.891 15 C -0.058 4.058 16 S -0.195 6.195 17 C -0.090 4.090 18 C -0.103 4.103 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.101 4.101 22 C -0.114 4.114 23 H 0.010 0.990 24 H 0.061 0.939 25 H 0.084 0.916 26 H -0.039 1.039 27 H -0.002 1.002 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -17.897 8.352 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.082 3.918 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.187 1.187 12 C -0.055 4.055 13 C -0.061 4.061 14 H 0.127 0.873 15 C -0.205 4.205 16 S 0.047 5.953 17 C -0.203 4.203 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.141 4.141 21 C -0.121 4.121 22 C -0.120 4.120 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.103 0.897 26 H -0.022 1.022 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.899 -18.132 7.317 19.645 hybrid contribution -1.204 1.617 0.536 2.086 sum -3.103 -16.515 7.853 18.548 Atomic orbital electron populations 1.22311 0.87313 1.01626 0.99984 1.61992 1.08386 1.15034 1.40932 1.19361 0.93436 0.83790 0.95166 1.21465 1.34830 0.97440 1.02235 0.91404 1.25939 0.94962 0.98136 1.00707 1.70099 1.39376 1.11896 1.36355 0.85367 0.77889 0.78112 0.79152 1.19731 1.20989 1.18700 1.21951 0.99362 0.92341 0.91805 1.20475 1.02367 0.93251 0.90036 0.87343 1.24372 0.93312 1.03558 0.99299 1.86091 1.21858 1.81620 1.05734 1.22273 0.97802 1.02454 0.97743 1.20733 1.01124 0.98980 0.91850 1.21490 0.94399 0.98736 0.97220 1.21353 0.96948 0.96885 0.98867 1.21122 1.00122 0.99262 0.91610 1.20911 0.95856 0.98607 0.96585 0.97142 0.92040 0.89716 1.02152 0.98348 0.92732 0.95750 0.92846 0.86695 0.86714 0.84534 0.81956 0.82661 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 9.15 127.69 1.17 2.47 16 2 N -0.54 -22.80 4.12 -927.07 -3.82 -26.62 16 3 C 0.21 11.25 4.72 85.56 0.40 11.66 16 4 C -0.52 -29.44 8.46 25.60 0.22 -29.22 16 5 H 0.07 3.70 7.12 -2.91 -0.02 3.68 16 6 C 0.00 0.02 5.46 84.66 0.46 0.49 16 7 N -0.94 -57.03 13.29 21.45 0.28 -56.74 16 8 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 12 C 0.07 2.72 4.22 86.30 0.36 3.08 16 13 C -0.04 -1.20 2.54 -11.10 -0.03 -1.23 16 14 H 0.11 2.78 6.24 -2.39 -0.01 2.76 16 15 C -0.06 -1.65 6.99 72.37 0.51 -1.14 16 16 S -0.19 -5.89 23.01 -56.49 -1.30 -7.19 16 17 C -0.09 -2.50 6.48 22.57 0.15 -2.36 16 18 C -0.10 -2.31 10.05 22.36 0.22 -2.09 16 19 C -0.10 -1.72 10.08 22.24 0.22 -1.49 16 20 C -0.12 -2.14 10.00 22.16 0.22 -1.92 16 21 C -0.10 -2.27 9.97 22.47 0.22 -2.05 16 22 C -0.11 -3.08 5.22 -19.32 -0.10 -3.18 16 23 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 24 H 0.06 2.42 6.76 -2.39 -0.02 2.41 16 25 H 0.08 2.41 6.33 -2.38 -0.02 2.40 16 26 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 27 H 0.00 -0.10 7.93 -2.39 -0.02 -0.11 16 28 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.02 0.91 8.11 -2.38 -0.02 0.89 16 30 H 0.05 2.19 7.88 -2.39 -0.02 2.17 16 31 H 0.11 3.78 7.41 -2.38 -0.02 3.76 16 32 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -66.08 307.34 2.28 -63.80 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.06 Total: 7.51 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.03 Total: -26.99 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.54 Total: -83.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -1.30 Total: -7.19 kcal Total: -66.08 2.28 -63.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092275868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.835 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds