Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47087 * 2 1 4 4 C 1.36938 * 120.00299 * 275.19028 * 3 2 1 5 5 H 1.08002 * 119.99754 * 37.96687 * 4 3 2 6 6 C 1.38811 * 120.00201 * 217.97551 * 4 3 2 7 7 N 1.31622 * 120.00123 * 21.50318 * 6 4 3 8 8 Si 1.86802 * 119.99993 * 201.50361 * 6 4 3 9 9 H 1.48498 * 109.47167 * 60.00054 * 8 6 4 10 10 H 1.48506 * 109.46959 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46987 * 299.99681 * 8 6 4 12 12 C 1.46504 * 120.00027 * 95.18870 * 3 2 1 13 13 C 1.52991 * 109.47052 * 269.99865 * 12 3 2 14 14 H 1.09007 * 109.26910 * 53.06827 * 13 12 3 15 15 C 1.54134 * 109.28111 * 293.54582 * 13 12 3 16 16 S 1.83304 * 101.08440 * 267.99392 * 15 13 12 17 17 C 1.77441 * 96.60700 * 335.15144 * 16 15 13 18 18 C 1.38813 * 130.57105 * 195.41936 * 17 16 15 19 19 C 1.38027 * 120.16006 * 179.97438 * 18 17 16 20 20 C 1.38329 * 119.29185 * 359.34663 * 19 18 17 21 21 C 1.37704 * 120.53920 * 0.69982 * 20 19 18 22 22 C 1.38887 * 108.27725 * 15.23681 * 17 16 15 23 23 H 1.08996 * 109.47282 * 60.00074 * 1 2 3 24 24 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47073 * 299.99685 * 1 2 3 26 26 H 1.08998 * 109.46925 * 239.99920 * 2 1 3 27 27 H 1.09008 * 109.47129 * 120.00324 * 2 1 3 28 28 H 0.97000 * 119.99864 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46937 * 149.99802 * 12 3 2 30 30 H 1.09002 * 109.46870 * 30.00269 * 12 3 2 31 31 H 1.09003 * 111.10348 * 150.04001 * 15 13 12 32 32 H 1.09000 * 111.13522 * 25.95809 * 15 13 12 33 33 H 1.08002 * 119.92047 * 359.65910 * 18 17 16 34 34 H 1.07994 * 120.35746 * 179.62886 * 19 18 17 35 35 H 1.08000 * 119.72974 * 180.39218 * 20 19 18 36 36 H 1.07992 * 119.47099 * 179.74812 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1454 2.0625 -1.1810 5 1 1.4109 1.9312 -1.9619 6 6 3.2183 2.9217 -1.3747 7 7 4.3107 2.7834 -0.6535 8 14 3.1118 4.2743 -2.6587 9 1 1.9815 5.1799 -2.3310 10 1 4.3790 5.0485 -2.6684 11 1 2.8901 3.6700 -3.9969 12 6 2.3706 2.0335 1.2636 13 6 1.1389 2.7395 1.8338 14 1 0.3132 2.0303 1.8934 15 6 0.7437 3.9037 0.9043 16 16 1.6715 5.2908 1.6627 17 6 1.7710 4.6016 3.2948 18 6 2.0912 5.1958 4.5078 19 6 2.1031 4.4451 5.6660 20 6 1.7798 3.1015 5.6050 21 6 1.4631 2.5120 4.4015 22 6 1.4543 3.2515 3.2176 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0603 3.3841 -0.7886 29 1 3.1595 2.7648 1.0873 30 1 2.7216 1.2846 1.9736 31 1 -0.3306 4.0854 0.9379 32 1 1.0766 3.7213 -0.1175 33 1 2.3365 6.2470 4.5446 34 1 2.3575 4.9028 6.6105 35 1 1.7807 2.5089 6.5079 36 1 1.2174 1.4607 4.3732 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092275883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 43.227150 kcal Electronic energy + Delta-G solvation = -18145.840996 eV Core-core repulsion = 15528.387615 eV Total energy + Delta-G solvation = -2617.453382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11332 -36.59705 -33.69429 -31.93491 -30.54493 -29.46549 -28.34481 -26.19613 -23.73474 -22.50613 -22.39851 -20.48001 -19.64642 -17.29624 -16.76350 -15.23289 -15.08742 -14.85445 -14.41050 -14.14370 -13.72393 -13.63632 -13.09823 -12.65869 -12.43374 -12.34879 -11.98615 -11.67706 -11.58415 -11.17246 -11.10297 -10.79966 -10.69855 -10.53295 -10.48915 -10.10320 -9.90415 -9.72625 -9.42927 -9.20978 -8.48205 -8.46122 -6.85921 -6.59045 -5.83765 -3.42645 1.54066 1.63318 2.22649 2.93613 3.33916 3.40969 3.43044 3.97425 4.42679 4.96356 5.14014 5.19899 5.28805 5.43269 5.52439 5.64789 5.73092 5.81885 5.98115 6.01344 6.22707 6.26687 6.29729 6.36327 6.56233 6.61557 6.63956 6.67329 6.74385 6.79164 6.87885 6.93711 7.12603 7.20031 7.67600 7.78336 8.47474 9.13857 9.75473 10.35812 11.14985 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.008706 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.349851 B = 3215.475099 C = 4071.364559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.274 4.274 5 H 0.061 0.939 6 C 0.025 3.975 7 N -0.872 5.872 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.280 1.280 12 C 0.158 3.842 13 C -0.078 4.078 14 H 0.079 0.921 15 C -0.069 4.069 16 S -0.168 6.168 17 C -0.074 4.074 18 C -0.095 4.095 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.081 4.081 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.106 0.894 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 0.692 9.238 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.301 5.301 4 C -0.403 4.403 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.512 5.512 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.206 1.206 12 C 0.031 3.969 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.216 4.216 16 S 0.076 5.924 17 C -0.187 4.187 18 C -0.120 4.120 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.087 4.087 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.258 1.880 8.536 10.200 hybrid contribution -0.469 -0.353 0.001 0.587 sum -5.727 1.527 8.537 10.393 Atomic orbital electron populations 1.22378 1.00152 0.98996 1.01098 1.20863 0.91628 0.87374 0.98808 1.43760 1.75997 1.08091 1.02273 1.18878 1.04796 1.22355 0.94318 0.92111 1.25176 0.94131 1.00912 0.97517 1.69954 1.02846 1.36845 1.41545 0.86685 0.77566 0.82721 0.81853 1.20413 1.21247 1.20609 1.20965 0.93530 0.96633 0.85764 1.21450 1.03230 0.97492 0.87851 0.90246 1.24757 0.99834 0.91475 1.05538 1.85924 1.72461 1.31335 1.02726 1.22192 1.03398 0.96445 0.96639 1.20338 1.01721 0.99587 0.90324 1.20936 1.00997 0.94238 0.97424 1.20840 1.01460 0.95216 0.97349 1.20787 1.00407 0.99475 0.91228 1.21193 0.99328 0.92626 0.95588 0.93135 0.94556 0.93904 0.93683 0.94915 0.93154 0.87649 0.95423 0.90739 0.83184 0.86214 0.85879 0.86272 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.14 2.83 6.44 -4.05 -0.03 2.80 16 3 N -0.58 -13.60 2.36 -173.24 -0.41 -14.01 16 4 C -0.27 -6.99 7.22 -15.06 -0.11 -7.10 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 6 C 0.03 0.67 4.54 -17.43 -0.08 0.59 16 7 N -0.87 -24.32 11.51 55.49 0.64 -23.68 16 8 Si 0.88 20.98 29.61 -169.99 -5.03 15.95 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.16 3.59 4.77 -4.04 -0.02 3.57 16 13 C -0.08 -1.54 2.78 -91.10 -0.25 -1.79 16 14 H 0.08 1.49 6.41 -51.93 -0.33 1.16 16 15 C -0.07 -1.39 6.99 37.75 0.26 -1.12 16 16 S -0.17 -3.39 23.01 -107.50 -2.47 -5.87 16 17 C -0.07 -1.38 6.48 -39.13 -0.25 -1.63 16 18 C -0.10 -1.51 10.05 -39.45 -0.40 -1.91 16 19 C -0.12 -1.58 10.08 -39.63 -0.40 -1.98 16 20 C -0.13 -1.75 10.00 -39.74 -0.40 -2.15 16 21 C -0.10 -1.56 9.97 -39.27 -0.39 -1.95 16 22 C -0.08 -1.49 5.22 -103.79 -0.54 -2.04 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.72 6.41 -51.93 -0.33 0.39 16 26 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.03 0.63 7.83 -51.92 -0.41 0.22 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.11 2.76 5.50 -51.93 -0.29 2.47 16 30 H 0.03 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.15 3.43 4.94 -51.93 -0.26 3.17 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -27.45 302.48 -9.89 -37.34 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.95 Total: 2.91 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.22 Total: -17.21 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.23 Total: -37.68 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.47 Total: -5.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.45 -9.89 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092275883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.572 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds