Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46491 * 109.47087 * 2 1 4 4 C 1.36938 * 120.00299 * 275.19028 * 3 2 1 5 5 H 1.08002 * 119.99754 * 37.96687 * 4 3 2 6 6 C 1.38811 * 120.00201 * 217.97551 * 4 3 2 7 7 N 1.31622 * 120.00123 * 21.50318 * 6 4 3 8 8 Si 1.86802 * 119.99993 * 201.50361 * 6 4 3 9 9 H 1.48498 * 109.47167 * 60.00054 * 8 6 4 10 10 H 1.48506 * 109.46959 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46987 * 299.99681 * 8 6 4 12 12 C 1.46504 * 120.00027 * 95.18870 * 3 2 1 13 13 C 1.52991 * 109.47052 * 269.99865 * 12 3 2 14 14 H 1.09007 * 109.26910 * 53.06827 * 13 12 3 15 15 C 1.54134 * 109.28111 * 293.54582 * 13 12 3 16 16 S 1.83304 * 101.08440 * 267.99392 * 15 13 12 17 17 C 1.77441 * 96.60700 * 335.15144 * 16 15 13 18 18 C 1.38813 * 130.57105 * 195.41936 * 17 16 15 19 19 C 1.38027 * 120.16006 * 179.97438 * 18 17 16 20 20 C 1.38329 * 119.29185 * 359.34663 * 19 18 17 21 21 C 1.37704 * 120.53920 * 0.69982 * 20 19 18 22 22 C 1.38887 * 108.27725 * 15.23681 * 17 16 15 23 23 H 1.08996 * 109.47282 * 60.00074 * 1 2 3 24 24 H 1.09000 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47073 * 299.99685 * 1 2 3 26 26 H 1.08998 * 109.46925 * 239.99920 * 2 1 3 27 27 H 1.09008 * 109.47129 * 120.00324 * 2 1 3 28 28 H 0.97000 * 119.99864 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.46937 * 149.99802 * 12 3 2 30 30 H 1.09002 * 109.46870 * 30.00269 * 12 3 2 31 31 H 1.09003 * 111.10348 * 150.04001 * 15 13 12 32 32 H 1.09000 * 111.13522 * 25.95809 * 15 13 12 33 33 H 1.08002 * 119.92047 * 359.65910 * 18 17 16 34 34 H 1.07994 * 120.35746 * 179.62886 * 19 18 17 35 35 H 1.08000 * 119.72974 * 180.39218 * 20 19 18 36 36 H 1.07992 * 119.47099 * 179.74812 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1454 2.0625 -1.1810 5 1 1.4109 1.9312 -1.9619 6 6 3.2183 2.9217 -1.3747 7 7 4.3107 2.7834 -0.6535 8 14 3.1118 4.2743 -2.6587 9 1 1.9815 5.1799 -2.3310 10 1 4.3790 5.0485 -2.6684 11 1 2.8901 3.6700 -3.9969 12 6 2.3706 2.0335 1.2636 13 6 1.1389 2.7395 1.8338 14 1 0.3132 2.0303 1.8934 15 6 0.7437 3.9037 0.9043 16 16 1.6715 5.2908 1.6627 17 6 1.7710 4.6016 3.2948 18 6 2.0912 5.1958 4.5078 19 6 2.1031 4.4451 5.6660 20 6 1.7798 3.1015 5.6050 21 6 1.4631 2.5120 4.4015 22 6 1.4543 3.2515 3.2176 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0603 3.3841 -0.7886 29 1 3.1595 2.7648 1.0873 30 1 2.7216 1.2846 1.9736 31 1 -0.3306 4.0854 0.9379 32 1 1.0766 3.7213 -0.1175 33 1 2.3365 6.2470 4.5446 34 1 2.3575 4.9028 6.6105 35 1 1.7807 2.5089 6.5079 36 1 1.2174 1.4607 4.3732 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092275883.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 30.651726 kcal Electronic energy + Delta-G solvation = -18146.386308 eV Core-core repulsion = 15528.387615 eV Total energy + Delta-G solvation = -2617.998693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41829 -38.24615 -35.20681 -33.81357 -31.74850 -30.96201 -29.86830 -28.01067 -25.46307 -23.90303 -23.63651 -22.13222 -21.17058 -18.72613 -18.53585 -16.94279 -16.48096 -16.31727 -15.88385 -15.72566 -15.39206 -15.23025 -14.37951 -14.13161 -13.96549 -13.81311 -13.50539 -13.21762 -13.18782 -12.93763 -12.58677 -12.46207 -12.34780 -12.17015 -12.04145 -11.93214 -11.60717 -11.31407 -10.96273 -10.55657 -10.44287 -9.70748 -8.56183 -8.32121 -7.80857 -5.42920 0.30161 0.42882 0.76853 1.40315 1.45283 1.46845 1.49262 2.47652 2.77247 3.25683 3.56893 3.73411 3.97840 4.05737 4.16247 4.24580 4.45290 4.52924 4.56050 4.69689 4.75175 4.83047 4.85842 4.97178 4.98945 5.11704 5.15455 5.20620 5.33369 5.43338 5.49952 5.59156 5.60820 5.71157 5.84585 6.04810 6.48322 7.18384 7.87346 8.41623 9.12794 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.008706 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.349851 B = 3215.475099 C = 4071.364559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.595 5.595 4 C -0.264 4.264 5 H 0.057 0.943 6 C -0.013 4.013 7 N -0.903 5.903 8 Si 0.926 3.074 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.273 1.273 12 C 0.166 3.834 13 C -0.064 4.064 14 H 0.088 0.912 15 C -0.063 4.063 16 S -0.214 6.214 17 C -0.092 4.092 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.105 4.105 22 C -0.107 4.107 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.250 0.750 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 0.076 11.725 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.316 5.316 4 C -0.394 4.394 5 H 0.075 0.925 6 C -0.212 4.212 7 N -0.546 5.546 8 Si 0.754 3.246 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.198 1.198 12 C 0.039 3.961 13 C -0.085 4.085 14 H 0.106 0.894 15 C -0.211 4.211 16 S 0.028 5.972 17 C -0.205 4.205 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.138 4.138 21 C -0.125 4.125 22 C -0.113 4.113 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.182 0.818 35 H 0.177 0.823 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.477 1.244 11.031 12.853 hybrid contribution -0.110 -0.213 -0.618 0.663 sum -6.588 1.031 10.413 12.365 Atomic orbital electron populations 1.22183 0.97413 1.00810 1.00731 1.20996 0.93656 0.85681 0.98732 1.43950 1.76331 1.09412 1.01938 1.18989 1.03853 1.21797 0.94754 0.92508 1.25605 0.94057 1.02548 0.99031 1.70070 1.03412 1.37652 1.43440 0.85991 0.76876 0.81019 0.80692 1.20306 1.22268 1.19824 1.20726 0.94127 0.95739 0.85475 1.21164 1.01664 0.97022 0.88681 0.89378 1.24585 1.00611 0.91782 1.04087 1.85916 1.73466 1.32156 1.05669 1.22271 1.05630 0.96620 0.95978 1.20695 1.01422 1.00688 0.90132 1.21441 0.98662 0.94130 0.98019 1.21338 0.99015 0.95601 0.97857 1.21094 1.00081 1.00250 0.91049 1.21151 1.01419 0.93033 0.95704 0.94304 0.91607 0.93406 0.94912 0.93846 0.94040 0.91132 0.95810 0.88934 0.85998 0.84972 0.81814 0.82310 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 10.21 71.98 0.73 -4.24 16 2 C 0.13 5.36 6.44 86.38 0.56 5.92 16 3 N -0.60 -28.08 2.36 -702.01 -1.66 -29.74 16 4 C -0.26 -13.69 7.22 84.03 0.61 -13.08 16 5 H 0.06 2.95 7.92 -2.91 -0.02 2.93 16 6 C -0.01 -0.70 4.54 84.86 0.39 -0.31 16 7 N -0.90 -52.17 11.51 21.65 0.25 -51.92 16 8 Si 0.93 44.27 29.61 68.60 2.03 46.30 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.17 7.64 4.77 86.38 0.41 8.05 16 13 C -0.06 -2.48 2.78 -11.10 -0.03 -2.51 16 14 H 0.09 3.21 6.41 -2.38 -0.02 3.20 16 15 C -0.06 -2.59 6.99 72.37 0.51 -2.08 16 16 S -0.21 -8.87 23.01 -56.49 -1.30 -10.17 16 17 C -0.09 -3.38 6.48 22.56 0.15 -3.24 16 18 C -0.11 -3.11 10.05 22.36 0.22 -2.88 16 19 C -0.10 -2.35 10.08 22.24 0.22 -2.12 16 20 C -0.12 -2.69 10.00 22.17 0.22 -2.47 16 21 C -0.10 -3.01 9.97 22.47 0.22 -2.78 16 22 C -0.11 -3.83 5.22 -19.32 -0.10 -3.93 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.51 6.41 -2.39 -0.02 1.49 16 26 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 27 H 0.04 1.62 7.83 -2.38 -0.02 1.60 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.07 3.82 5.50 -2.38 -0.01 3.81 16 30 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.12 5.72 4.94 -2.39 -0.01 5.71 16 33 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -61.12 302.48 4.49 -56.63 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.06 Total: 14.58 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.11 Total: -25.68 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.41 Total: -81.66 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.30 Total: -10.17 kcal Total: -61.12 4.49 -56.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092275883.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.277 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds