Wall clock time and date at job start Mon Mar 30 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38637 * 119.78168 * 2 1 4 4 C 1.37717 * 120.36128 * 180.28300 * 3 2 1 5 5 C 1.39803 * 119.91959 * 359.45166 * 4 3 2 6 6 C 1.47288 * 120.21827 * 180.30158 * 5 4 3 7 7 O 1.21520 * 120.00428 * 180.22941 * 6 5 4 8 8 O 1.34771 * 119.99592 * 0.22088 * 6 5 4 9 9 C 1.40401 * 119.57127 * 0.51910 * 5 4 3 10 10 N 1.38834 * 120.18218 * 179.77375 * 9 5 4 11 11 C 1.46905 * 111.00417 * 243.93592 * 10 9 5 12 12 C 1.46907 * 111.00147 * 119.98078 * 10 9 5 13 13 H 1.09001 * 109.46691 * 60.00510 * 12 10 9 14 14 C 1.52996 * 109.46778 * 300.00320 * 12 10 9 15 15 C 1.50697 * 109.47083 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00031 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99967 * 180.02562 * 15 12 10 18 18 N 1.31520 * 119.99540 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00009 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47053 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46916 * 119.99779 * 19 17 15 22 22 H 1.48505 * 109.46778 * 239.99176 * 19 17 15 23 23 C 1.37943 * 119.78401 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47394 * 89.99955 * 1 2 3 25 25 H 1.09003 * 109.46694 * 209.99908 * 1 2 3 26 26 H 1.09002 * 109.46578 * 329.99589 * 1 2 3 27 27 H 1.08002 * 119.81655 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.04107 * 179.72468 * 4 3 2 29 29 H 0.96701 * 116.99797 * 180.02562 * 8 6 5 30 30 H 1.08996 * 109.46917 * 59.99859 * 11 10 9 31 31 H 1.08994 * 109.47060 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.46877 * 300.00003 * 11 10 9 33 33 H 1.09004 * 109.47110 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47665 * 299.99593 * 14 12 10 35 35 H 1.09004 * 109.47600 * 60.00062 * 14 12 10 36 36 H 0.97003 * 119.99689 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.96372 * 359.97434 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2033 0.0000 4 6 3.5727 1.2172 -0.0059 5 6 4.2823 0.0126 -0.0003 6 6 5.7551 0.0199 0.0002 7 8 6.3680 -1.0294 0.0009 8 8 6.4232 1.1904 -0.0003 9 6 3.5818 -1.2042 0.0003 10 7 4.2737 -2.4078 0.0011 11 6 4.0139 -3.1653 -1.2305 12 6 3.9417 -3.2052 1.1894 13 1 2.8724 -3.4167 1.1978 14 6 4.3168 -2.4228 2.4495 15 6 4.7103 -4.5009 1.1557 16 1 5.3783 -4.7113 0.3336 17 6 4.5600 -5.4184 2.1740 18 7 3.7461 -5.1623 3.1749 19 14 5.5122 -7.0249 2.1319 20 1 6.3524 -7.0703 0.9083 21 1 6.3806 -7.1171 3.3329 22 1 4.5600 -8.1644 2.1208 23 6 2.1922 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6491 2.1348 0.0004 28 1 4.1039 2.1575 -0.0103 29 1 7.3891 1.1446 -0.0003 30 1 4.3337 -2.5790 -2.0919 31 1 4.5683 -4.1033 -1.2039 32 1 2.9473 -3.3753 -1.3097 33 1 4.0700 -3.0142 3.3313 34 1 5.3860 -2.2112 2.4411 35 1 3.7611 -1.4853 2.4741 36 1 3.6406 -5.8075 3.8914 37 1 1.6481 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094917594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:47 Heat of formation + Delta-G solvation = -48.912612 kcal Electronic energy + Delta-G solvation = -20484.096874 eV Core-core repulsion = 17419.895141 eV Total energy + Delta-G solvation = -3064.201733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17270 -38.70824 -36.58539 -35.35345 -33.00124 -32.42215 -29.73976 -28.94250 -27.49460 -25.46624 -24.28424 -22.77088 -22.28744 -20.48446 -19.23355 -17.59905 -16.80334 -16.25285 -15.39692 -15.11154 -15.01627 -14.69372 -14.11263 -13.85388 -13.71719 -13.44592 -12.93967 -12.62711 -12.30798 -12.10877 -11.92635 -11.64159 -11.45340 -11.12117 -11.03940 -10.89918 -10.75248 -10.61822 -10.15540 -10.06064 -9.99233 -9.87138 -8.92894 -8.55605 -8.42139 -8.23664 -7.24249 -6.00192 -4.03643 1.08663 1.64188 3.08789 3.31404 3.39163 3.44721 3.50144 4.09388 4.41734 4.77597 4.96808 5.06087 5.30935 5.32103 5.43321 5.63003 5.71328 5.82837 5.89315 5.99075 6.18889 6.22310 6.29647 6.44664 6.67099 6.74560 6.79809 6.87716 6.96810 7.00752 7.10089 7.20541 7.48324 7.79381 7.87402 8.14984 8.31234 8.52627 8.66197 9.01740 9.60433 11.06879 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.007090 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.862834 B = 3948.180149 C = 4739.136098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.156 4.156 4 C -0.060 4.060 5 C -0.126 4.126 6 C 0.510 3.490 7 O -0.456 6.456 8 O -0.531 6.531 9 C 0.195 3.805 10 N -0.500 5.500 11 C 0.047 3.953 12 C 0.222 3.778 13 H 0.003 0.997 14 C -0.130 4.130 15 C -0.499 4.499 16 H 0.067 0.933 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.286 1.286 23 C -0.167 4.167 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.405 0.595 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.003 0.997 36 H 0.260 0.740 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 12.437 -6.603 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.174 4.174 4 C -0.079 4.079 5 C -0.128 4.128 6 C 0.351 3.649 7 O -0.339 6.339 8 O -0.344 6.344 9 C 0.099 3.901 10 N -0.221 5.221 11 C -0.099 4.099 12 C 0.118 3.882 13 H 0.021 0.979 14 C -0.189 4.189 15 C -0.538 4.538 16 H 0.085 0.915 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.187 4.187 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.270 12.096 -6.411 14.075 hybrid contribution 0.290 -1.047 0.176 1.100 sum -2.979 11.050 -6.235 13.033 Atomic orbital electron populations 1.20860 0.91279 1.02985 1.02280 1.20019 0.96041 0.92980 0.95714 1.20843 0.93880 0.97337 1.05313 1.21295 0.94058 0.97069 0.95455 1.19055 0.89279 0.93495 1.10979 1.20709 0.88776 0.80977 0.74431 1.91032 1.68843 1.32030 1.42021 1.84562 1.26135 1.36433 1.87296 1.19046 0.89695 0.91983 0.89338 1.59706 1.55288 1.02438 1.04675 1.22208 0.98480 0.99036 0.90195 1.19347 0.94510 0.90580 0.83718 0.97923 1.21787 0.98967 0.96494 1.01611 1.21172 1.25160 1.00012 1.07408 0.91525 1.24925 0.95483 0.98548 0.95335 1.69911 1.37192 1.35578 1.10687 0.86435 0.79733 0.83134 0.78097 1.19679 1.21041 1.21181 1.21737 0.94766 0.98271 1.03939 0.91040 0.91238 0.91455 0.85884 0.84934 0.73811 0.93789 0.89563 0.96602 0.89522 0.94502 0.97835 0.93056 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.00 36.01 0.36 -0.93 16 2 C -0.05 -0.68 5.88 -104.58 -0.62 -1.29 16 3 C -0.16 -2.07 9.67 -39.62 -0.38 -2.46 16 4 C -0.06 -0.88 9.61 -39.19 -0.38 -1.26 16 5 C -0.13 -2.30 5.89 -104.82 -0.62 -2.91 16 6 C 0.51 9.42 8.26 34.41 0.28 9.71 16 7 O -0.46 -10.16 15.81 -19.28 -0.30 -10.46 16 8 O -0.53 -7.36 12.68 -40.68 -0.52 -7.88 16 9 C 0.20 3.92 3.30 -83.61 -0.28 3.65 16 10 N -0.50 -11.44 2.54 -172.45 -0.44 -11.88 16 11 C 0.05 0.98 9.10 60.07 0.55 1.52 16 12 C 0.22 5.76 1.83 -68.86 -0.13 5.64 16 13 H 0.00 0.09 7.11 -51.93 -0.37 -0.28 16 14 C -0.13 -3.40 8.84 37.16 0.33 -3.07 16 15 C -0.50 -13.98 7.88 -34.44 -0.27 -14.25 16 16 H 0.07 1.88 6.41 -52.49 -0.34 1.55 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 C -0.17 -2.97 8.18 -39.42 -0.32 -3.29 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.63 7.61 -52.49 -0.40 1.23 16 29 H 0.40 3.82 9.11 45.56 0.42 4.23 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.88 6.10 -51.93 -0.32 1.56 16 32 H 0.02 0.30 7.33 -51.93 -0.38 -0.08 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.00 0.07 7.22 -51.93 -0.38 -0.31 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.13 2.34 7.01 -52.49 -0.37 1.98 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -32.36 307.89 -6.69 -39.05 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -4.11 Total: 2.36 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.56 Total: -7.43 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.19 Total: -36.98 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.82 Total: -18.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.36 -6.69 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094917594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.865 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds