Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38637 * 119.78168 * 2 1 4 4 C 1.37717 * 120.36128 * 180.28300 * 3 2 1 5 5 C 1.39803 * 119.91959 * 359.45166 * 4 3 2 6 6 C 1.47288 * 120.21827 * 180.30158 * 5 4 3 7 7 O 1.21520 * 120.00428 * 180.22941 * 6 5 4 8 8 O 1.34771 * 119.99592 * 0.22088 * 6 5 4 9 9 C 1.40401 * 119.57127 * 0.51910 * 5 4 3 10 10 N 1.38834 * 120.18218 * 179.77375 * 9 5 4 11 11 C 1.46905 * 111.00417 * 243.93592 * 10 9 5 12 12 C 1.46907 * 111.00147 * 119.98078 * 10 9 5 13 13 H 1.09001 * 109.46691 * 60.00510 * 12 10 9 14 14 C 1.52996 * 109.46778 * 300.00320 * 12 10 9 15 15 C 1.50697 * 109.47083 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00031 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99967 * 180.02562 * 15 12 10 18 18 N 1.31520 * 119.99540 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00009 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47053 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46916 * 119.99779 * 19 17 15 22 22 H 1.48505 * 109.46778 * 239.99176 * 19 17 15 23 23 C 1.37943 * 119.78401 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47394 * 89.99955 * 1 2 3 25 25 H 1.09003 * 109.46694 * 209.99908 * 1 2 3 26 26 H 1.09002 * 109.46578 * 329.99589 * 1 2 3 27 27 H 1.08002 * 119.81655 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.04107 * 179.72468 * 4 3 2 29 29 H 0.96701 * 116.99797 * 180.02562 * 8 6 5 30 30 H 1.08996 * 109.46917 * 59.99859 * 11 10 9 31 31 H 1.08994 * 109.47060 * 179.97438 * 11 10 9 32 32 H 1.08994 * 109.46877 * 300.00003 * 11 10 9 33 33 H 1.09004 * 109.47110 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47665 * 299.99593 * 14 12 10 35 35 H 1.09004 * 109.47600 * 60.00062 * 14 12 10 36 36 H 0.97003 * 119.99689 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.96372 * 359.97434 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2033 0.0000 4 6 3.5727 1.2172 -0.0059 5 6 4.2823 0.0126 -0.0003 6 6 5.7551 0.0199 0.0002 7 8 6.3680 -1.0294 0.0009 8 8 6.4232 1.1904 -0.0003 9 6 3.5818 -1.2042 0.0003 10 7 4.2737 -2.4078 0.0011 11 6 4.0139 -3.1653 -1.2305 12 6 3.9417 -3.2052 1.1894 13 1 2.8724 -3.4167 1.1978 14 6 4.3168 -2.4228 2.4495 15 6 4.7103 -4.5009 1.1557 16 1 5.3783 -4.7113 0.3336 17 6 4.5600 -5.4184 2.1740 18 7 3.7461 -5.1623 3.1749 19 14 5.5122 -7.0249 2.1319 20 1 6.3524 -7.0703 0.9083 21 1 6.3806 -7.1171 3.3329 22 1 4.5600 -8.1644 2.1208 23 6 2.1922 -1.1972 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5139 27 1 1.6491 2.1348 0.0004 28 1 4.1039 2.1575 -0.0103 29 1 7.3891 1.1446 -0.0003 30 1 4.3337 -2.5790 -2.0919 31 1 4.5683 -4.1033 -1.2039 32 1 2.9473 -3.3753 -1.3097 33 1 4.0700 -3.0142 3.3313 34 1 5.3860 -2.2112 2.4411 35 1 3.7611 -1.4853 2.4741 36 1 3.6406 -5.8075 3.8914 37 1 1.6481 -2.1301 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094917594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = -69.418821 kcal Electronic energy + Delta-G solvation = -20484.986090 eV Core-core repulsion = 17419.895141 eV Total energy + Delta-G solvation = -3065.090949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55280 -40.08646 -38.12627 -36.71545 -34.94313 -33.67636 -31.50688 -30.60997 -28.59295 -27.43599 -26.07671 -24.09180 -23.76057 -22.02316 -20.76362 -18.90319 -18.42544 -18.03005 -17.16902 -16.49328 -16.42317 -16.32140 -15.61489 -15.34779 -15.11067 -14.67543 -14.49220 -14.12789 -13.90117 -13.72298 -13.11377 -13.02704 -12.97105 -12.73820 -12.69649 -12.57956 -12.31824 -12.22151 -12.12541 -12.05883 -11.87818 -11.33800 -11.01289 -10.56397 -9.80364 -9.53451 -8.98321 -8.14820 -6.25666 -0.19664 0.38224 1.38206 1.40209 1.52766 1.76238 2.27202 2.40006 2.81891 3.11561 3.21284 3.89011 3.93996 4.19122 4.25981 4.44223 4.53295 4.58113 4.68011 4.77542 4.82114 4.85377 4.90929 4.93566 5.00450 5.14406 5.24357 5.27788 5.36499 5.51692 5.57710 5.68183 5.74850 5.80114 5.94475 6.21315 6.27208 6.85673 6.87529 7.26150 7.42347 8.91764 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.007090 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.862834 B = 3948.180149 C = 4739.136098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.039 4.039 3 C -0.141 4.141 4 C -0.049 4.049 5 C -0.151 4.151 6 C 0.514 3.486 7 O -0.508 6.508 8 O -0.512 6.512 9 C 0.158 3.842 10 N -0.509 5.509 11 C 0.052 3.948 12 C 0.232 3.768 13 H -0.024 1.024 14 C -0.109 4.109 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.275 1.275 23 C -0.186 4.186 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.170 0.830 28 H 0.163 0.837 29 H 0.425 0.575 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 14.753 -7.135 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.040 4.040 3 C -0.158 4.158 4 C -0.067 4.067 5 C -0.153 4.153 6 C 0.358 3.642 7 O -0.396 6.396 8 O -0.327 6.327 9 C 0.062 3.938 10 N -0.230 5.230 11 C -0.094 4.094 12 C 0.127 3.873 13 H -0.006 1.006 14 C -0.167 4.167 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.201 1.201 23 C -0.206 4.206 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.286 0.714 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.152 14.458 -6.958 16.574 hybrid contribution 0.508 -1.585 0.304 1.692 sum -3.644 12.873 -6.654 14.942 Atomic orbital electron populations 1.20946 0.88563 1.03937 1.03792 1.20441 0.98006 0.92129 0.93450 1.21362 0.93483 0.98506 1.02460 1.21655 0.94817 0.96661 0.93555 1.19236 0.89443 0.94163 1.12450 1.20872 0.89178 0.81127 0.73060 1.91013 1.69876 1.33953 1.44748 1.84491 1.27931 1.33919 1.86312 1.19175 0.90723 0.91281 0.92582 1.59504 1.56443 1.03196 1.03841 1.22139 0.98469 0.98392 0.90415 1.19026 0.92439 0.90509 0.85305 1.00644 1.21517 0.97701 0.96615 1.00915 1.21408 1.25388 1.01455 1.07384 0.92584 1.25698 0.96311 1.01712 0.94910 1.70019 1.38107 1.36654 1.11120 0.85449 0.78520 0.79305 0.78014 1.19519 1.20621 1.20101 1.21669 0.94009 0.99212 1.05710 0.89084 0.92118 0.88701 0.81277 0.81960 0.71440 0.92029 0.91532 0.96105 0.91723 0.96242 0.96576 0.92811 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 10.00 71.24 0.71 -1.45 16 2 C -0.04 -1.04 5.88 -19.84 -0.12 -1.15 16 3 C -0.14 -3.11 9.67 22.24 0.22 -2.89 16 4 C -0.05 -1.25 9.61 22.53 0.22 -1.04 16 5 C -0.15 -5.35 5.89 -19.99 -0.12 -5.47 16 6 C 0.51 18.78 8.26 70.20 0.58 19.36 16 7 O -0.51 -23.25 15.81 19.77 0.31 -22.93 16 8 O -0.51 -13.13 12.68 -56.82 -0.72 -13.85 16 9 C 0.16 6.41 3.30 38.73 0.13 6.54 16 10 N -0.51 -24.23 2.54 -699.51 -1.78 -26.01 16 11 C 0.05 2.26 9.10 127.69 1.16 3.42 16 12 C 0.23 12.62 1.83 44.17 0.08 12.70 16 13 H -0.02 -1.39 7.11 -2.39 -0.02 -1.41 16 14 C -0.11 -5.93 8.84 71.98 0.64 -5.29 16 15 C -0.52 -30.22 7.88 25.60 0.20 -30.02 16 16 H 0.06 3.32 6.41 -2.91 -0.02 3.30 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 19 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.19 -6.62 8.18 22.37 0.18 -6.44 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 26 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.16 3.20 7.61 -2.91 -0.02 3.17 16 29 H 0.42 7.19 9.11 -74.06 -0.67 6.52 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 3.07 6.10 -2.39 -0.01 3.05 16 32 H 0.02 0.84 7.33 -2.39 -0.02 0.83 16 33 H 0.06 3.75 6.07 -2.39 -0.01 3.74 16 34 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.02 0.78 7.22 -2.38 -0.02 0.76 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.11 4.22 7.01 -2.91 -0.02 4.20 16 Total: -1.00 -73.23 307.89 4.83 -68.41 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.41 Total: 11.50 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.33 Total: -10.58 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.54 Total: -80.04 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.41 Total: -36.78 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.23 4.83 -68.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094917594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.011 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds