Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47250 * 2 1 4 4 C 1.50702 * 120.00182 * 273.89795 * 3 2 1 5 5 C 1.35980 * 119.99986 * 93.89043 * 3 2 1 6 6 C 1.40607 * 119.99965 * 354.30818 * 5 3 2 7 7 H 1.07999 * 120.00191 * 326.64558 * 6 5 3 8 8 C 1.39959 * 119.99846 * 146.64883 * 6 5 3 9 9 N 1.30841 * 119.99732 * 168.46838 * 8 6 5 10 10 Si 1.86796 * 120.00291 * 348.46991 * 8 6 5 11 11 H 1.48506 * 109.47213 * 85.08640 * 10 8 6 12 12 H 1.48493 * 109.47474 * 205.09057 * 10 8 6 13 13 H 1.48502 * 109.47391 * 325.09108 * 10 8 6 14 14 S 1.76197 * 119.99992 * 174.30227 * 5 3 2 15 15 C 1.76201 * 103.00072 * 112.95871 * 14 5 3 16 16 C 1.38752 * 120.09896 * 354.28512 * 15 14 5 17 17 C 1.38224 * 119.98928 * 180.23257 * 16 15 14 18 18 C 1.38291 * 120.20619 * 359.51081 * 17 16 15 19 19 C 1.38267 * 120.20179 * 0.46932 * 18 17 16 20 20 C 1.38663 * 120.00582 * 359.78631 * 19 18 17 21 21 N 1.39948 * 120.10004 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47007 * 64.99638 * 1 2 3 23 23 H 1.08999 * 109.47229 * 184.99290 * 1 2 3 24 24 H 1.08997 * 109.46803 * 304.99325 * 1 2 3 25 25 H 1.09002 * 109.46975 * 240.00125 * 2 1 3 26 26 H 1.08999 * 109.47084 * 120.00287 * 2 1 3 27 27 H 1.09006 * 109.46642 * 274.06700 * 4 3 2 28 28 H 1.09001 * 109.47221 * 34.06472 * 4 3 2 29 29 H 1.09003 * 109.47207 * 154.07242 * 4 3 2 30 30 H 0.96996 * 119.99950 * 179.97438 * 9 8 6 31 31 H 1.07989 * 120.00425 * 359.95296 * 16 15 14 32 32 H 1.08003 * 119.89518 * 179.74943 * 17 16 15 33 33 H 1.08000 * 119.89475 * 180.25286 * 18 17 16 34 34 H 1.07999 * 119.99583 * 179.76706 * 19 18 17 35 35 H 0.96997 * 119.99865 * 179.97438 * 21 20 19 36 36 H 0.97003 * 119.99793 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1999 2.1608 -1.3021 5 6 2.3343 2.0352 1.1749 6 6 2.0658 1.3899 2.3950 7 1 1.2080 0.7400 2.4848 8 6 2.9102 1.5900 3.4931 9 7 2.5467 1.1797 4.6811 10 14 4.5560 2.4429 3.2626 11 1 4.3643 3.9142 3.3251 12 1 5.4881 2.0190 4.3381 13 1 5.1242 2.0736 1.9412 14 16 3.0623 3.6397 1.1684 15 6 1.7987 4.6511 1.8649 16 6 0.5510 4.1121 2.1444 17 6 -0.4401 4.9087 2.6863 18 6 -0.1896 6.2407 2.9610 19 6 1.0508 6.7862 2.6863 20 6 2.0497 5.9962 2.1377 21 7 3.3061 6.5462 1.8593 22 1 -0.3633 0.4344 -0.9313 23 1 -0.3633 -1.0237 0.0894 24 1 -0.3633 0.5893 0.8419 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.1812 1.9395 -1.7220 28 1 1.4258 1.8452 -2.0016 29 1 2.1141 3.2328 -1.1244 30 1 3.1320 1.3180 5.4421 31 1 0.3529 3.0715 1.9343 32 1 -1.4120 4.4886 2.8994 33 1 -0.9664 6.8575 3.3882 34 1 1.2416 7.8278 2.8987 35 1 4.0039 5.9922 1.4759 36 1 3.4791 7.4815 2.0498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105634142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = 14.084281 kcal Electronic energy + Delta-G solvation = -17940.147970 eV Core-core repulsion = 15321.430859 eV Total energy + Delta-G solvation = -2618.717111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.55543 -35.80381 -33.95393 -33.07454 -30.48547 -29.81314 -28.30337 -28.00490 -23.57836 -22.37685 -22.25832 -21.36398 -17.82142 -17.76432 -16.80145 -16.27670 -15.75390 -14.99810 -14.25101 -13.69524 -13.51147 -13.23930 -13.01512 -12.95617 -12.60571 -12.50352 -12.39171 -11.70129 -11.51247 -11.26864 -11.17007 -10.94609 -10.69532 -10.36733 -10.29018 -10.15652 -9.89577 -9.74829 -9.31087 -8.97319 -8.70591 -7.59008 -7.30556 -6.79004 -6.07867 -4.36249 1.93039 2.19750 2.40850 3.05667 3.31040 3.39507 3.56651 3.81452 4.19865 4.33205 4.44966 5.14062 5.41888 5.61646 5.87834 6.01537 6.09323 6.12114 6.26450 6.34598 6.43722 6.57470 6.59672 6.66752 6.69418 6.76932 6.86455 6.97905 7.04277 7.18057 7.21760 7.24163 7.45085 7.67875 7.90106 8.09213 8.14981 8.33236 8.63367 8.89724 10.23708 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.010181 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.496548 B = 2749.671136 C = 3207.069331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.263 4.263 4 C -0.085 4.085 5 C 0.023 3.977 6 C -0.438 4.438 7 H 0.096 0.904 8 C 0.090 3.910 9 N -0.814 5.814 10 Si 0.884 3.116 11 H -0.248 1.248 12 H -0.290 1.290 13 H -0.252 1.252 14 S -0.127 6.127 15 C -0.140 4.140 16 C -0.054 4.054 17 C -0.168 4.168 18 C -0.089 4.089 19 C -0.199 4.199 20 C 0.223 3.777 21 N -0.877 5.877 22 H 0.039 0.961 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.281 0.719 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.398 0.602 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 7.217 -4.000 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.273 4.273 4 C -0.142 4.142 5 C -0.088 4.088 6 C -0.471 4.471 7 H 0.113 0.887 8 C -0.129 4.129 9 N -0.440 5.440 10 Si 0.712 3.288 11 H -0.172 1.172 12 H -0.218 1.218 13 H -0.177 1.177 14 S 0.125 5.875 15 C -0.256 4.256 16 C -0.077 4.077 17 C -0.190 4.190 18 C -0.111 4.111 19 C -0.223 4.223 20 C 0.114 3.886 21 N -0.418 5.418 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.228 0.772 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.245 7.478 -4.129 8.546 hybrid contribution -0.225 0.106 0.587 0.637 sum 0.020 7.584 -3.542 8.371 Atomic orbital electron populations 1.21695 0.97476 0.99557 1.00892 1.19967 0.93820 0.94106 1.00247 1.21595 1.17370 0.96254 0.92075 1.20445 0.98615 0.99718 0.95448 1.20452 1.00946 0.91149 0.96290 1.19162 1.11014 1.24837 0.92137 0.88670 1.26118 0.99922 0.92825 0.94022 1.69655 1.36860 1.37502 0.99942 0.86183 0.81333 0.81981 0.79308 1.17224 1.21813 1.17713 1.83361 1.23218 1.05927 1.74969 1.21347 0.99089 0.94752 1.10386 1.21329 0.90968 1.00368 0.95068 1.20821 0.99381 0.94090 1.04700 1.20746 0.95850 0.95222 0.99231 1.20303 0.93989 0.98938 1.09066 1.17328 0.86069 0.90715 0.94450 1.42491 1.12135 1.13374 1.73819 0.94166 0.94449 0.92751 0.94503 0.91450 0.94582 0.94830 0.92548 0.90844 0.84188 0.86824 0.86909 0.86852 0.77238 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.82 37.16 0.36 -2.18 16 2 C -0.04 -0.85 5.48 -27.88 -0.15 -1.00 16 3 C -0.26 -5.83 5.45 -100.16 -0.55 -6.37 16 4 C -0.09 -1.68 9.60 36.01 0.35 -1.33 16 5 C 0.02 0.55 3.52 -39.50 -0.14 0.41 16 6 C -0.44 -11.38 6.77 -38.04 -0.26 -11.64 16 7 H 0.10 2.62 6.90 -52.49 -0.36 2.26 16 8 C 0.09 2.38 5.48 -17.33 -0.09 2.29 16 9 N -0.81 -22.16 13.93 55.55 0.77 -21.39 16 10 Si 0.88 21.13 24.38 -169.99 -4.14 16.99 16 11 H -0.25 -5.85 6.59 56.52 0.37 -5.47 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.25 -6.10 6.99 56.52 0.39 -5.70 16 14 S -0.13 -2.84 12.77 -107.50 -1.37 -4.21 16 15 C -0.14 -3.03 6.11 -38.91 -0.24 -3.26 16 16 C -0.05 -1.16 9.03 -39.40 -0.36 -1.51 16 17 C -0.17 -3.12 10.04 -39.57 -0.40 -3.52 16 18 C -0.09 -1.48 10.04 -39.55 -0.40 -1.88 16 19 C -0.20 -3.32 9.89 -39.41 -0.39 -3.71 16 20 C 0.22 4.21 6.76 -83.51 -0.56 3.65 16 21 N -0.88 -13.93 9.04 32.54 0.29 -13.64 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 1.07 7.70 -51.93 -0.40 0.67 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.49 6.82 -51.93 -0.35 1.14 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.13 6.68 -51.93 -0.35 0.78 16 30 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 31 H 0.14 3.27 5.63 -52.49 -0.30 2.98 16 32 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.40 6.53 7.38 -40.82 -0.30 6.23 16 36 H 0.39 4.83 8.85 -40.82 -0.36 4.47 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -27.54 301.91 -7.69 -35.23 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -4.97 Total: 12.53 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -2.82 Total: -30.06 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 1.07 Total: -35.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.14 Total: 16.99 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.37 Total: -4.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.54 -7.69 -35.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105634142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.315 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds