Wall clock time and date at job start Mon Mar 30 2020 06:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47250 * 2 1 4 4 C 1.50702 * 120.00182 * 273.89795 * 3 2 1 5 5 C 1.35980 * 119.99986 * 93.89043 * 3 2 1 6 6 C 1.40607 * 119.99965 * 354.30818 * 5 3 2 7 7 H 1.07999 * 120.00191 * 326.64558 * 6 5 3 8 8 C 1.39959 * 119.99846 * 146.64883 * 6 5 3 9 9 N 1.30841 * 119.99732 * 168.46838 * 8 6 5 10 10 Si 1.86796 * 120.00291 * 348.46991 * 8 6 5 11 11 H 1.48506 * 109.47213 * 85.08640 * 10 8 6 12 12 H 1.48493 * 109.47474 * 205.09057 * 10 8 6 13 13 H 1.48502 * 109.47391 * 325.09108 * 10 8 6 14 14 S 1.76197 * 119.99992 * 174.30227 * 5 3 2 15 15 C 1.76201 * 103.00072 * 112.95871 * 14 5 3 16 16 C 1.38752 * 120.09896 * 354.28512 * 15 14 5 17 17 C 1.38224 * 119.98928 * 180.23257 * 16 15 14 18 18 C 1.38291 * 120.20619 * 359.51081 * 17 16 15 19 19 C 1.38267 * 120.20179 * 0.46932 * 18 17 16 20 20 C 1.38663 * 120.00582 * 359.78631 * 19 18 17 21 21 N 1.39948 * 120.10004 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47007 * 64.99638 * 1 2 3 23 23 H 1.08999 * 109.47229 * 184.99290 * 1 2 3 24 24 H 1.08997 * 109.46803 * 304.99325 * 1 2 3 25 25 H 1.09002 * 109.46975 * 240.00125 * 2 1 3 26 26 H 1.08999 * 109.47084 * 120.00287 * 2 1 3 27 27 H 1.09006 * 109.46642 * 274.06700 * 4 3 2 28 28 H 1.09001 * 109.47221 * 34.06472 * 4 3 2 29 29 H 1.09003 * 109.47207 * 154.07242 * 4 3 2 30 30 H 0.96996 * 119.99950 * 179.97438 * 9 8 6 31 31 H 1.07989 * 120.00425 * 359.95296 * 16 15 14 32 32 H 1.08003 * 119.89518 * 179.74943 * 17 16 15 33 33 H 1.08000 * 119.89475 * 180.25286 * 18 17 16 34 34 H 1.07999 * 119.99583 * 179.76706 * 19 18 17 35 35 H 0.96997 * 119.99865 * 179.97438 * 21 20 19 36 36 H 0.97003 * 119.99793 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1999 2.1608 -1.3021 5 6 2.3343 2.0352 1.1749 6 6 2.0658 1.3899 2.3950 7 1 1.2080 0.7400 2.4848 8 6 2.9102 1.5900 3.4931 9 7 2.5467 1.1797 4.6811 10 14 4.5560 2.4429 3.2626 11 1 4.3643 3.9142 3.3251 12 1 5.4881 2.0190 4.3381 13 1 5.1242 2.0736 1.9412 14 16 3.0623 3.6397 1.1684 15 6 1.7987 4.6511 1.8649 16 6 0.5510 4.1121 2.1444 17 6 -0.4401 4.9087 2.6863 18 6 -0.1896 6.2407 2.9610 19 6 1.0508 6.7862 2.6863 20 6 2.0497 5.9962 2.1377 21 7 3.3061 6.5462 1.8593 22 1 -0.3633 0.4344 -0.9313 23 1 -0.3633 -1.0237 0.0894 24 1 -0.3633 0.5893 0.8419 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.1812 1.9395 -1.7220 28 1 1.4258 1.8452 -2.0016 29 1 2.1141 3.2328 -1.1244 30 1 3.1320 1.3180 5.4421 31 1 0.3529 3.0715 1.9343 32 1 -1.4120 4.4886 2.8994 33 1 -0.9664 6.8575 3.3882 34 1 1.2416 7.8278 2.8987 35 1 4.0039 5.9922 1.4759 36 1 3.4791 7.4815 2.0498 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105634142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:07 Heat of formation + Delta-G solvation = -1.645823 kcal Electronic energy + Delta-G solvation = -17940.830079 eV Core-core repulsion = 15321.430859 eV Total energy + Delta-G solvation = -2619.399220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96961 -37.59191 -35.32096 -34.96459 -32.03276 -31.41630 -30.07105 -29.38936 -25.34910 -24.05083 -23.72802 -22.81720 -19.72310 -19.47426 -18.30217 -17.67716 -17.22240 -16.81327 -15.93312 -15.24592 -14.97151 -14.77267 -14.75300 -14.53100 -14.34078 -14.08871 -14.01786 -13.30411 -13.07639 -12.99288 -12.88939 -12.60844 -12.25804 -12.16614 -12.03748 -11.53478 -11.51938 -11.42106 -11.19388 -10.77320 -10.26942 -9.41315 -8.79897 -8.68329 -7.72835 -6.32170 0.45354 0.72020 0.76839 1.20307 1.39272 1.47544 1.69283 2.06162 2.27143 2.97118 3.05441 3.18924 4.08255 4.28976 4.40549 4.52168 4.57853 4.69391 4.73033 4.85304 4.85607 4.88626 5.07288 5.10159 5.17483 5.23632 5.34036 5.35961 5.41836 5.53899 5.55867 5.77965 5.91476 6.04863 6.17678 6.33316 6.53584 6.75971 6.94761 6.98882 8.33351 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.010181 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.496548 B = 2749.671136 C = 3207.069331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 C -0.242 4.242 4 C -0.085 4.085 5 C -0.004 4.004 6 C -0.449 4.449 7 H 0.061 0.939 8 C 0.053 3.947 9 N -0.861 5.861 10 Si 0.929 3.071 11 H -0.243 1.243 12 H -0.287 1.287 13 H -0.258 1.258 14 S -0.120 6.120 15 C -0.175 4.175 16 C -0.077 4.077 17 C -0.182 4.182 18 C -0.076 4.076 19 C -0.194 4.194 20 C 0.216 3.784 21 N -0.868 5.868 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.283 0.717 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.396 0.604 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 9.599 -5.447 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.251 4.251 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.484 4.484 7 H 0.079 0.921 8 C -0.161 4.161 9 N -0.490 5.490 10 Si 0.755 3.245 11 H -0.167 1.167 12 H -0.216 1.216 13 H -0.183 1.183 14 S 0.131 5.869 15 C -0.291 4.291 16 C -0.101 4.101 17 C -0.203 4.203 18 C -0.097 4.097 19 C -0.218 4.218 20 C 0.106 3.894 21 N -0.409 5.409 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.224 0.776 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.078 9.885 -5.583 11.353 hybrid contribution -0.312 -0.577 0.833 1.060 sum -0.234 9.308 -4.750 10.453 Atomic orbital electron populations 1.21586 0.95703 1.00725 1.00724 1.20058 0.95349 0.93139 1.00222 1.22283 1.12940 0.96938 0.92918 1.20484 1.00221 0.99171 0.94305 1.20497 1.02859 0.92090 0.96077 1.18964 1.10440 1.25606 0.93428 0.92105 1.26653 1.01997 0.93547 0.93857 1.69711 1.38073 1.40656 1.00552 0.85502 0.78803 0.81406 0.78785 1.16730 1.21566 1.18303 1.82995 1.23942 1.04446 1.75555 1.21449 0.98789 0.95969 1.12862 1.21194 0.92361 0.99439 0.97093 1.21066 0.99393 0.95188 1.04698 1.21219 0.96857 0.94414 0.97204 1.20793 0.93203 1.00515 1.07277 1.17581 0.87602 0.89970 0.94203 1.42454 1.11020 1.14358 1.73083 0.92279 0.92284 0.95281 0.91885 0.94013 0.93108 0.92464 0.92890 0.90710 0.87404 0.85457 0.82778 0.82916 0.77558 0.75807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.82 71.98 0.71 -3.98 16 2 C -0.05 -1.94 5.48 29.85 0.16 -1.78 16 3 C -0.24 -10.62 5.45 -16.97 -0.09 -10.71 16 4 C -0.08 -3.16 9.60 71.24 0.68 -2.47 16 5 C 0.00 -0.19 3.52 22.32 0.08 -0.11 16 6 C -0.45 -24.67 6.77 23.27 0.16 -24.51 16 7 H 0.06 3.64 6.90 -2.91 -0.02 3.62 16 8 C 0.05 2.92 5.48 85.26 0.47 3.38 16 9 N -0.86 -49.46 13.93 21.83 0.30 -49.15 16 10 Si 0.93 44.64 24.38 68.60 1.67 46.31 16 11 H -0.24 -11.31 6.59 99.48 0.66 -10.66 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.26 -12.41 6.99 99.48 0.70 -11.71 16 14 S -0.12 -5.34 12.77 -56.49 -0.72 -6.06 16 15 C -0.18 -7.50 6.11 22.71 0.14 -7.36 16 16 C -0.08 -3.40 9.03 22.39 0.20 -3.19 16 17 C -0.18 -6.58 10.04 22.28 0.22 -6.35 16 18 C -0.08 -2.26 10.04 22.29 0.22 -2.04 16 19 C -0.19 -5.74 9.89 22.38 0.22 -5.52 16 20 C 0.22 7.69 6.76 38.26 0.26 7.95 16 21 N -0.87 -25.27 9.04 -50.97 -0.46 -25.73 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.03 1.17 7.70 -2.39 -0.02 1.15 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.90 6.82 -2.39 -0.02 1.89 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.03 6.68 -2.39 -0.02 2.02 16 30 H 0.28 15.10 8.30 -92.71 -0.77 14.33 16 31 H 0.11 5.35 5.63 -2.92 -0.02 5.33 16 32 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.40 12.17 7.38 -92.71 -0.68 11.49 16 36 H 0.41 8.66 8.85 -92.71 -0.82 7.84 16 Total: -1.00 -62.32 301.91 3.76 -58.56 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.47 Total: 32.76 kcal Atomic # 6 Polarization: -60.14 SS G_CDS: 3.43 Total: -56.70 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -0.16 Total: -74.88 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.31 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -0.72 Total: -6.06 kcal Total: -62.32 3.76 -58.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105634142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.919 kcal (2) G-P(sol) polarization free energy of solvation -62.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds