Wall clock time and date at job start Mon Mar 30 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47294 * 2 1 4 4 H 1.09004 * 109.46746 * 54.86093 * 3 2 1 5 5 C 1.50694 * 109.47551 * 174.86378 * 3 2 1 6 6 H 1.08002 * 120.00189 * 119.99913 * 5 3 2 7 7 C 1.37880 * 119.99883 * 300.00579 * 5 3 2 8 8 N 1.31513 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46806 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46808 * 119.99751 * 9 7 5 12 12 H 1.48495 * 109.47124 * 239.99981 * 9 7 5 13 13 N 1.46905 * 109.46894 * 294.86807 * 3 2 1 14 14 C 1.46898 * 110.99630 * 152.52203 * 13 3 2 15 15 H 1.08996 * 109.26225 * 326.68714 * 14 13 3 16 16 C 1.54141 * 109.27289 * 86.11660 * 14 13 3 17 17 S 1.83297 * 101.08903 * 148.45211 * 16 14 13 18 18 C 1.77435 * 96.59866 * 335.12334 * 17 16 14 19 19 C 1.38822 * 130.56806 * 195.49317 * 18 17 16 20 20 C 1.38027 * 120.16090 * 179.72242 * 19 18 17 21 21 C 1.38323 * 119.28769 * 359.97438 * 20 19 18 22 22 C 1.37701 * 120.54582 * 0.09636 * 21 20 19 23 23 C 1.38888 * 108.27701 * 15.41649 * 18 17 16 24 24 H 1.09001 * 109.46920 * 175.39756 * 1 2 3 25 25 H 1.08994 * 109.46717 * 295.39296 * 1 2 3 26 26 H 1.08992 * 109.47062 * 55.39661 * 1 2 3 27 27 H 1.09008 * 109.47018 * 240.00135 * 2 1 3 28 28 H 1.08998 * 109.47284 * 120.00280 * 2 1 3 29 29 H 0.97000 * 120.00107 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99539 * 276.47072 * 13 3 2 31 31 H 1.08994 * 111.09490 * 266.40954 * 16 14 13 32 32 H 1.09004 * 111.09731 * 30.49526 * 16 14 13 33 33 H 1.08003 * 119.91765 * 359.70241 * 19 18 17 34 34 H 1.07997 * 120.35613 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.72739 * 180.12277 * 21 20 19 36 36 H 1.08003 * 119.46990 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4445 0.1272 6 1 4.1487 1.8884 -0.6479 7 6 4.1405 0.8793 1.2331 8 7 3.4014 0.3391 2.1772 9 14 6.0019 0.8811 1.3905 10 1 6.5984 1.5445 0.2032 11 1 6.3941 1.6177 2.6188 12 1 6.4930 -0.5178 1.4741 13 7 1.6542 2.0983 -1.2566 14 6 1.5178 3.5493 -1.0728 15 1 1.1505 3.7514 -0.0667 16 6 2.8955 4.2167 -1.2532 17 16 2.4115 5.8420 -1.9488 18 6 0.8643 5.3156 -2.6397 19 6 0.0393 5.9250 -3.5751 20 6 -1.1328 5.3121 -3.9699 21 6 -1.4731 4.0876 -3.4240 22 6 -0.6554 3.4838 -2.4951 23 6 0.5326 4.0884 -2.0803 24 1 -0.3633 -1.0244 -0.0825 25 1 -0.3632 0.4407 0.9283 26 1 -0.3633 0.5836 -0.8458 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8227 -0.0588 2.9550 30 1 2.3124 1.8872 -1.9916 31 1 3.4025 4.3350 -0.2956 32 1 3.5134 3.6575 -1.9558 33 1 0.3150 6.8812 -3.9948 34 1 -1.7767 5.7832 -4.6977 35 1 -2.3876 3.6007 -3.7293 36 1 -0.9382 2.5278 -2.0798 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123547745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:01 Heat of formation + Delta-G solvation = 20.510268 kcal Electronic energy + Delta-G solvation = -17714.095265 eV Core-core repulsion = 15095.656805 eV Total energy + Delta-G solvation = -2618.438460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21043 -36.72498 -33.88157 -31.75472 -30.66159 -30.18729 -28.21361 -26.28120 -23.36212 -22.77636 -22.31226 -20.40603 -19.67398 -17.43320 -16.76319 -15.36014 -15.23958 -15.06462 -14.47819 -14.37999 -13.75704 -13.41826 -13.24626 -12.87313 -12.65566 -12.12982 -11.94223 -11.70489 -11.53134 -11.36096 -11.25344 -11.00739 -10.79858 -10.73062 -10.32625 -9.92434 -9.69554 -9.58381 -9.42214 -9.17772 -8.56009 -8.47729 -7.49798 -7.16699 -6.10497 -4.23684 1.38546 1.56244 1.91280 2.58559 3.19682 3.29317 3.31171 3.87808 4.30838 4.79758 4.89375 5.09347 5.16283 5.28670 5.38893 5.48543 5.63722 5.75288 5.91624 6.13575 6.14854 6.26616 6.33208 6.44274 6.49133 6.57646 6.65986 6.73933 7.00186 7.07699 7.12365 7.30728 7.46620 7.67146 7.93665 7.98225 8.16793 8.46698 8.87071 9.44804 10.90179 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.006505 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.773420 B = 4303.173128 C = 5345.734259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.672 5.672 14 C 0.129 3.871 15 H 0.098 0.902 16 C -0.085 4.085 17 S -0.186 6.186 18 C -0.079 4.079 19 C -0.098 4.098 20 C -0.112 4.112 21 C -0.130 4.130 22 C -0.069 4.069 23 C -0.080 4.080 24 H 0.025 0.975 25 H 0.036 0.964 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.091 0.909 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 6.799 -8.424 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.302 5.302 14 C 0.017 3.983 15 H 0.116 0.884 16 C -0.235 4.235 17 S 0.055 5.945 18 C -0.191 4.191 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.089 4.089 23 C -0.086 4.086 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.587 7.682 -8.052 12.932 hybrid contribution 1.465 -0.918 0.243 1.746 sum -5.123 6.763 -7.809 11.531 Atomic orbital electron populations 1.21730 0.99022 0.98620 1.00308 1.21498 0.92101 0.99032 1.01812 1.19285 0.93230 0.91454 0.85412 0.94825 1.21878 0.92424 1.38730 1.05677 0.92533 1.24918 0.97882 0.94821 0.95699 1.69877 1.34814 1.37926 1.09361 0.86631 0.86025 0.77875 0.78046 1.19860 1.20994 1.20911 1.60923 1.54047 1.04162 1.11018 1.20842 0.89255 0.90546 0.97637 0.88426 1.25316 1.01371 0.92020 1.04763 1.85897 1.20279 1.19675 1.68655 1.22035 0.98597 0.98105 1.00400 1.20309 0.94678 1.00100 0.97048 1.20989 0.96281 0.95794 1.00143 1.20979 0.99955 0.95917 0.98213 1.20901 0.92578 0.99547 0.95885 1.20988 0.96634 0.93808 0.97121 0.95544 0.94504 0.93236 0.95011 0.89039 0.92812 0.84764 0.86246 0.88507 0.86208 0.85804 0.86086 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.85 37.16 0.37 -2.34 16 2 C -0.11 -2.38 5.45 -26.73 -0.15 -2.53 16 3 C 0.21 4.83 1.98 -68.86 -0.14 4.70 16 4 H 0.03 0.85 7.35 -51.93 -0.38 0.47 16 5 C -0.55 -13.51 7.80 -34.44 -0.27 -13.78 16 6 H 0.06 1.37 6.90 -52.49 -0.36 1.01 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -12.86 5.19 -101.45 -0.53 -13.38 16 14 C 0.13 2.31 2.89 -68.19 -0.20 2.11 16 15 H 0.10 1.89 7.36 -51.93 -0.38 1.50 16 16 C -0.09 -1.47 5.86 37.75 0.22 -1.25 16 17 S -0.19 -3.03 23.08 -107.50 -2.48 -5.51 16 18 C -0.08 -1.26 6.48 -39.12 -0.25 -1.51 16 19 C -0.10 -1.34 10.05 -39.44 -0.40 -1.73 16 20 C -0.11 -1.35 10.08 -39.63 -0.40 -1.75 16 21 C -0.13 -1.65 10.00 -39.75 -0.40 -2.05 16 22 C -0.07 -1.04 9.69 -39.27 -0.38 -1.42 16 23 C -0.08 -1.32 5.71 -103.79 -0.59 -1.91 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 27 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.33 6.46 7.77 -39.29 -0.31 6.16 16 31 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 32 H 0.10 1.68 7.35 -51.93 -0.38 1.30 16 33 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.13 1.97 7.96 -52.48 -0.42 1.55 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -25.68 304.78 -10.51 -36.19 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.03 Total: 7.79 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.67 Total: -21.76 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.10 Total: -36.50 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.48 Total: -5.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.68 -10.51 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123547745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.700 kcal (2) G-P(sol) polarization free energy of solvation -25.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds