Wall clock time and date at job start Mon Mar 30 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38501 * 120.10362 * 2 1 4 4 O 1.35907 * 119.98574 * 0.02903 * 3 2 1 5 5 C 1.38813 * 120.02690 * 180.23063 * 3 2 1 6 6 C 1.38282 * 120.23872 * 359.79626 * 5 3 2 7 7 C 1.37957 * 120.21231 * 359.97438 * 6 5 3 8 8 C 1.39491 * 120.10204 * 179.79699 * 2 1 3 9 9 C 1.47855 * 120.11758 * 0.02562 * 8 2 1 10 10 O 1.21550 * 120.00032 * 307.38299 * 9 8 2 11 11 N 1.34782 * 119.99766 * 127.38114 * 9 8 2 12 12 C 1.46493 * 119.99989 * 4.03280 * 11 9 8 13 13 C 1.46495 * 119.99831 * 184.03573 * 11 9 8 14 14 H 1.09004 * 109.47268 * 0.02562 * 13 11 9 15 15 C 1.53001 * 109.47333 * 119.99992 * 13 11 9 16 16 C 1.50699 * 109.47267 * 239.99798 * 13 11 9 17 17 H 1.08000 * 119.99950 * 0.02562 * 16 13 11 18 18 C 1.37872 * 120.00225 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00106 * 359.97438 * 18 16 13 20 20 Si 1.86807 * 120.00060 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47067 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47007 * 120.00126 * 20 18 16 23 23 H 1.48496 * 109.46911 * 239.99638 * 20 18 16 24 24 H 1.08998 * 109.47362 * 265.09232 * 1 2 3 25 25 H 1.09005 * 109.47386 * 25.09106 * 1 2 3 26 26 H 1.08997 * 109.47372 * 145.08958 * 1 2 3 27 27 H 0.96707 * 113.99732 * 270.20759 * 4 3 2 28 28 H 1.07995 * 119.87636 * 179.76620 * 5 3 2 29 29 H 1.08006 * 119.89415 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.02412 * 180.02562 * 7 6 5 31 31 H 1.09010 * 109.47047 * 84.48991 * 12 11 9 32 32 H 1.09005 * 109.47280 * 324.49587 * 12 11 9 33 33 H 1.09003 * 109.47231 * 204.49065 * 12 11 9 34 34 H 1.09000 * 109.46811 * 300.00153 * 15 13 11 35 35 H 1.09001 * 109.47358 * 59.99615 * 15 13 11 36 36 H 1.09002 * 109.47246 * 180.02562 * 15 13 11 37 37 H 0.97005 * 120.00210 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2016 1.1982 0.0000 4 8 1.5239 2.3763 0.0006 5 6 3.5897 1.1963 -0.0048 6 6 4.2845 0.0008 -0.0054 7 6 3.6026 -1.1985 -0.0007 8 6 2.2066 -1.2068 0.0043 9 6 1.4722 -2.4901 0.0083 10 8 0.6153 -2.6973 0.8450 11 7 1.7529 -3.4300 -0.9161 12 6 2.8450 -3.2170 -1.8690 13 6 0.9660 -4.6645 -0.9677 14 1 0.2046 -4.6430 -0.1880 15 6 0.2910 -4.7822 -2.3357 16 6 1.8734 -5.8481 -0.7519 17 1 2.9306 -5.6960 -0.5918 18 6 1.3541 -7.1253 -0.7589 19 7 0.0667 -7.3106 -0.9533 20 14 2.4789 -8.5925 -0.4906 21 1 3.8727 -8.1185 -0.2960 22 1 2.0373 -9.3411 0.7135 23 1 2.4208 -9.4840 -1.6767 24 1 -0.3634 -0.0879 1.0239 25 1 -0.3634 0.9307 -0.4358 26 1 -0.3634 -0.8427 -0.5881 27 1 1.3246 2.7158 -0.8827 28 1 4.1289 2.1321 -0.0086 29 1 5.3646 0.0058 -0.0096 30 1 4.1483 -2.1305 -0.0007 31 1 3.7882 -3.5203 -1.4144 32 1 2.8934 -2.1613 -2.1362 33 1 2.6661 -3.8109 -2.7653 34 1 -0.3654 -3.9261 -2.4919 35 1 1.0520 -4.8035 -3.1158 36 1 -0.2949 -5.7006 -2.3740 37 1 -0.2987 -8.2092 -0.9586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125610583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:46 Heat of formation + Delta-G solvation = -52.449454 kcal Electronic energy + Delta-G solvation = -20091.685097 eV Core-core repulsion = 17027.329996 eV Total energy + Delta-G solvation = -3064.355102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28212 -38.64945 -36.45441 -35.39647 -32.89586 -32.52591 -30.48456 -28.89480 -26.89550 -26.15646 -25.23805 -23.63272 -21.77556 -20.80026 -19.04478 -17.86430 -16.59359 -16.20949 -15.99867 -15.67381 -15.49525 -14.89324 -14.28266 -14.09225 -13.46825 -13.14451 -12.95290 -12.68760 -12.55788 -12.22980 -11.93936 -11.82921 -11.59020 -11.41183 -11.30874 -11.07972 -10.82388 -10.73180 -10.67620 -10.25901 -10.19315 -9.19169 -9.07806 -8.70027 -8.54048 -8.44193 -7.62622 -6.08711 -4.16619 1.07505 1.26716 3.23668 3.25362 3.33565 3.36523 3.62277 3.94561 4.22032 4.39187 4.84862 4.87154 5.02997 5.15017 5.23063 5.42497 5.68327 5.73564 5.77038 5.84167 5.90615 6.03348 6.26617 6.31474 6.32467 6.38976 6.53067 6.71139 6.75150 6.80570 7.02414 7.40248 7.49004 7.57056 7.69467 7.98956 8.17011 8.47714 8.80643 8.99458 9.49961 10.96686 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.005212 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.841099 B = 5371.377421 C = 5787.821685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C 0.092 3.908 4 O -0.494 6.494 5 C -0.131 4.131 6 C -0.117 4.117 7 C -0.094 4.094 8 C -0.099 4.099 9 C 0.546 3.454 10 O -0.540 6.540 11 N -0.584 5.584 12 C 0.086 3.914 13 C 0.257 3.743 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.385 0.615 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.011 0.989 35 H 0.031 0.969 36 H 0.095 0.905 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 15.159 -3.445 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C 0.048 3.952 4 O -0.303 6.303 5 C -0.150 4.150 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.102 4.102 9 C 0.332 3.668 10 O -0.419 6.419 11 N -0.315 5.315 12 C -0.058 4.058 13 C 0.157 3.843 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.241 0.759 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.866 14.796 -2.429 16.101 hybrid contribution 0.751 -0.796 -0.421 1.172 sum 6.617 14.000 -2.850 15.745 Atomic orbital electron populations 1.20675 0.90032 1.02151 1.03563 1.20234 0.97098 0.91153 0.98220 1.18119 0.89736 0.84586 1.02767 1.84856 1.76591 1.35672 1.33210 1.21449 0.93279 0.98866 1.01418 1.20915 0.99969 0.91573 1.01061 1.21425 0.92933 0.98909 0.97970 1.20030 0.93944 0.93744 1.02514 1.18189 0.83147 0.83264 0.82197 1.90751 1.33749 1.79877 1.37505 1.48205 1.33114 1.19364 1.30803 1.21666 0.90088 1.00036 0.93997 1.18999 0.91130 0.78827 0.95373 0.91794 1.22105 0.99307 1.01395 0.97731 1.21337 0.94680 0.90488 1.49773 0.92211 1.24893 0.95159 0.98861 0.94875 1.69885 1.11378 1.22009 1.49339 0.86431 0.80732 0.82352 0.77821 1.19822 1.20897 1.20939 0.90139 0.91760 0.91171 0.75923 0.85444 0.85283 0.84904 0.93337 0.92899 0.90563 0.96976 0.95034 0.88690 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 8.79 36.00 0.32 -1.32 16 2 C -0.07 -1.02 5.92 -104.06 -0.62 -1.64 16 3 C 0.09 1.20 6.67 -39.27 -0.26 0.94 16 4 O -0.49 -5.47 12.46 -19.45 -0.24 -5.71 16 5 C -0.13 -1.50 9.98 -39.35 -0.39 -1.89 16 6 C -0.12 -1.35 10.02 -39.67 -0.40 -1.74 16 7 C -0.09 -1.34 7.91 -39.17 -0.31 -1.65 16 8 C -0.10 -1.70 4.76 -104.98 -0.50 -2.20 16 9 C 0.55 11.72 6.21 -12.32 -0.08 11.64 16 10 O -0.54 -13.64 15.38 5.32 0.08 -13.56 16 11 N -0.58 -12.57 2.75 -176.37 -0.49 -13.06 16 12 C 0.09 1.46 8.33 59.84 0.50 1.96 16 13 C 0.26 6.54 2.63 -69.09 -0.18 6.36 16 14 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 15 C -0.15 -3.48 8.96 37.16 0.33 -3.14 16 16 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 17 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 0.78 7.39 -51.93 -0.38 0.40 16 26 H 0.07 1.19 7.13 -51.93 -0.37 0.82 16 27 H 0.39 2.37 9.06 45.56 0.41 2.79 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.13 1.83 6.65 -52.49 -0.35 1.48 16 31 H 0.05 0.77 7.18 -51.92 -0.37 0.40 16 32 H 0.05 0.76 6.46 -51.93 -0.34 0.43 16 33 H 0.08 1.30 6.44 -51.93 -0.33 0.97 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.03 0.68 6.67 -51.93 -0.35 0.34 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -32.16 304.92 -6.39 -38.56 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.98 Total: 3.03 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.97 Total: -5.43 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.14 Total: -37.44 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.16 Total: -19.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.16 -6.39 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125610583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.893 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds